CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 681

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3681E681EE1499EsyngaAgaG16416414760-4762
ORF1ab/nsp3681E681GE1499GnonsyngAagGa1291280.9922484760-4762
ORF1ab/nsp3681E681GE1499GnonsyngAAgGT12910.007751944760-4762
ORF1ab/nsp3681E681delE1499deldelGAA---757514760-4762
ORF1ab/nsp3681E681XE1499XnonsynGaaTaa737314760-4762
ORF1ab/nsp3681E681AE1499AnonsyngAagCa272714760-4762
ORF1ab/nsp3681E681QE1499QnonsynGaaCaa202014760-4762
ORF1ab/nsp3681E681KE1499KnonsynGaaAaa191914760-4762
ORF1ab/nsp3681E681DE1499DnonsyngaAgaC11100.9090914760-4762
ORF1ab/nsp3681E681DE1499DnonsyngaAgaT1110.09090914760-4762
ORF1ab/nsp3681E681TE1499TnonsynGAAACC520.44760-4762
ORF1ab/nsp3681E681TE1499TnonsynGAAACG520.44760-4762
ORF1ab/nsp3681E681TE1499TnonsynGAaACa510.24760-4762
ORF1ab/nsp3681E681RE1499RnonsynGAaAGa320.6666674760-4762
ORF1ab/nsp3681E681del1E1499del1delGaa-aa320.6666674760-4762
ORF1ab/nsp3681E681RE1499RnonsynGAaCGa310.3333334760-4762
ORF1ab/nsp3681E681del1E1499del1delgAag-a310.3333334760-4762
ORF1ab/nsp3681E681NE1499NnonsynGaAAaC1114760-4762
ORF1ab/nsp3681E681del2E1499del2delgAAg--1114760-4762
ORF1ab/nsp3681E681LE1499LnonsynGAACTC1114760-4762
ORF1ab/nsp3681E681VE1499VnonsyngAagTa1114760-4762
ORF1ab/nsp3681E681PE1499PnonsynGAaCCa1114760-4762

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3681E681EgaAgaG164164All0.000031
ORF1ab/nsp3681E681GgAagGa128129All0.000024
ORF1ab/nsp3681E681GgAAgGT1129All0
ORF1ab/nsp3681E681delGAA---7575All0.000014
ORF1ab/nsp3681E681XGaaTaa7373All0.000014
ORF1ab/nsp3681E681GgAagGa3838AY.40.000059
ORF1ab/nsp3681E681EgaAgaG3636B.1.1.4081
ORF1ab/nsp3681E681AgAagCa2727All0.000005
ORF1ab/nsp3681E681XGaaTaa2727AY.40.000042
ORF1ab/nsp3681E681EgaAgaG2727B.1.10.00049
ORF1ab/nsp3681E681GgAagGa2627B.1.10.000472
ORF1ab/nsp3681E681GgAAgGT127B.1.10.000018
ORF1ab/nsp3681E681delGAA---2222B.1.1.70.00002
ORF1ab/nsp3681E681XGaaTaa2121AY.4.50.002257
ORF1ab/nsp3681E681QGaaCaa2020All0.000004
ORF1ab/nsp3681E681KGaaAaa1919All0.000004
ORF1ab/nsp3681E681GgAagGa1414B.1.1.70.000013
ORF1ab/nsp3681E681EgaAgaG1313B.1.1.70.000012
ORF1ab/nsp3681E681GgAagGa1111AD.20.002409
ORF1ab/nsp3681E681DgaAgaC1011All0.000002
ORF1ab/nsp3681E681DgaAgaT111All0
ORF1ab/nsp3681E681EgaAgaG1010AY.250.00006
ORF1ab/nsp3681E681EgaAgaG1010B.1.617.20.000038
ORF1ab/nsp3681E681QGaaCaa88B.1.1.70.000007
ORF1ab/nsp3681E681EgaAgaG88B.1.3510.000238
ORF1ab/nsp3681E681EgaAgaG77AY.1030.000043
ORF1ab/nsp3681E681EgaAgaG66AY.1210.000812
ORF1ab/nsp3681E681delGAA---66AY.40.000009
ORF1ab/nsp3681E681QGaaCaa66B.1.5250.000679
ORF1ab/nsp3681E681EgaAgaG66C.300.010363
ORF1ab/nsp3681E681TGAAACG25All0
ORF1ab/nsp3681E681TGAAACC25All0
ORF1ab/nsp3681E681TGAaACa15All0
ORF1ab/nsp3681E681EgaAgaG55AY.40.000008
ORF1ab/nsp3681E681XGaaTaa55AY.90.000338
ORF1ab/nsp3681E681GgAagGa55B.10.000046
ORF1ab/nsp3681E681EgaAgaG55B.1.20.000044
ORF1ab/nsp3681E681TGAAACC240.111111
ORF1ab/nsp3681E681TGAAACG240.111111
ORF1ab/nsp3681E681KGaaAaa44AY.40.000006
ORF1ab/nsp3681E681EgaAgaG44AY.430.000018
ORF1ab/nsp3681E681XGaaTaa44AY.80.002424
ORF1ab/nsp3681E681AgAagCa44B.1.1.70.000004
ORF1ab/nsp3681E681GgAagGa44B.1.2210.000284
ORF1ab/nsp3681E681GgAagGa44B.1.3690.001141
ORF1ab/nsp3681E681EgaAgaG44P.10.000063
ORF1ab/nsp3681E681del1Gaa-aa23All0
ORF1ab/nsp3681E681RGAaAGa23All0
ORF1ab/nsp3681E681RGAaCGa13All0
ORF1ab/nsp3681E681del1gAag-a13All0
ORF1ab/nsp3681E681GgAagGa33AY.250.000018
ORF1ab/nsp3681E681delGAA---33AY.430.000013
ORF1ab/nsp3681E681KGaaAaa33AY.440.000018
ORF1ab/nsp3681E681AgAagCa33AY.440.000018
ORF1ab/nsp3681E681QGaaCaa33B.1.1.3690.001339
ORF1ab/nsp3681E681EgaAgaG33B.1.1.5190.000119
ORF1ab/nsp3681E681KGaaAaa33B.1.1.70.000003
ORF1ab/nsp3681E681GgAagGa33B.1.1600.000094
ORF1ab/nsp3681E681AgAagCa33B.1.258.210.023256
ORF1ab/nsp3681E681QGaaCaa220.111111
ORF1ab/nsp3681E681delGAA---220.111111
ORF1ab/nsp3681E681GgAagGa22AY.116.10.000623
ORF1ab/nsp3681E681XGaaTaa22AY.1200.000074
ORF1ab/nsp3681E681EgaAgaG22AY.230.000139
ORF1ab/nsp3681E681AgAagCa22AY.250.000012
ORF1ab/nsp3681E681DgaAgaC22AY.250.000012
ORF1ab/nsp3681E681AgAagCa22AY.30.00002
ORF1ab/nsp3681E681delGAA---22AY.4.50.000215
ORF1ab/nsp3681E681AgAagCa22AY.430.000009
ORF1ab/nsp3681E681delGAA---22AY.440.000012
ORF1ab/nsp3681E681KGaaAaa22AY.46.60.000144
ORF1ab/nsp3681E681AgAagCa22AY.580.001815
ORF1ab/nsp3681E681RGAaAGa12AY.840.000437
ORF1ab/nsp3681E681RGAaCGa12AY.840.000437
ORF1ab/nsp3681E681delGAA---22B.10.000018
ORF1ab/nsp3681E681EgaAgaG22B.10.000018
ORF1ab/nsp3681E681EgaAgaG22B.1.1.3980.006452
ORF1ab/nsp3681E681XGaaTaa22B.1.1.70.000002
ORF1ab/nsp3681E681AgAagCa22B.1.1770.000026
ORF1ab/nsp3681E681EgaAgaG22B.1.1770.000026
ORF1ab/nsp3681E681delGAA---22B.1.177.40.000422
ORF1ab/nsp3681E681GgAagGa22B.1.20.000018
ORF1ab/nsp3681E681delGAA---22B.1.360.000292
ORF1ab/nsp3681E681EgaAgaG22B.1.360.000292
ORF1ab/nsp3681E681XGaaTaa22B.1.5960.000174
ORF1ab/nsp3681E681delGAA---22B.1.6190.001742
ORF1ab/nsp3681E681GgAagGa22P.10.000032
ORF1ab/nsp3681E681delGAA---22P.10.000032
ORF1ab/nsp3681E681delGAA---11A.2.20.001689
ORF1ab/nsp3681E681NGaAAaC11All0
ORF1ab/nsp3681E681VgAagTa11All0
ORF1ab/nsp3681E681del2gAAg--11All0
ORF1ab/nsp3681E681PGAaCCa11All0
ORF1ab/nsp3681E681LGAACTC11All0
ORF1ab/nsp3681E681GgAagGa11AY.1020.000027
ORF1ab/nsp3681E681GgAagGa11AY.1030.000006
ORF1ab/nsp3681E681GgAagGa11AY.1100.000113
ORF1ab/nsp3681E681delGAA---11AY.1130.000142
ORF1ab/nsp3681E681KGaaAaa11AY.1190.000035
ORF1ab/nsp3681E681KGaaAaa11AY.160.00038
ORF1ab/nsp3681E681XGaaTaa11AY.170.008197
ORF1ab/nsp3681E681GgAagGa11AY.190.00114
ORF1ab/nsp3681E681delGAA---11AY.250.000006
ORF1ab/nsp3681E681GgAagGa11AY.30.00001
ORF1ab/nsp3681E681GgAagGa11AY.4.20.000022
ORF1ab/nsp3681E681DgaAgaC11AY.4.20.000022
ORF1ab/nsp3681E681GgAagGa11AY.4.2.10.000149
ORF1ab/nsp3681E681GgAagGa11AY.4.50.000107
ORF1ab/nsp3681E681EgaAgaG11AY.440.000006
ORF1ab/nsp3681E681RGAaAGa11AY.440.000006
ORF1ab/nsp3681E681GgAagGa11AY.440.000006
ORF1ab/nsp3681E681del1Gaa-aa11AY.440.000006
ORF1ab/nsp3681E681AgAagCa11AY.450.000122
ORF1ab/nsp3681E681EgaAgaG11AY.46.20.000635
ORF1ab/nsp3681E681EgaAgaG11AY.46.60.000072
ORF1ab/nsp3681E681DgaAgaC11AY.480.000465
ORF1ab/nsp3681E681GgAagGa11AY.530.000288
ORF1ab/nsp3681E681XGaaTaa11AY.580.000907
ORF1ab/nsp3681E681KGaaAaa11AY.620.000436
ORF1ab/nsp3681E681DgaAgaC11AY.75.10.00018
ORF1ab/nsp3681E681delGAA---11AY.810.001992
ORF1ab/nsp3681E681TGAaACa11AY.840.000437
ORF1ab/nsp3681E681PGAaCCa11AY.840.000437
ORF1ab/nsp3681E681EgaAgaG11AY.870.000833
ORF1ab/nsp3681E681XGaaTaa11AY.870.000833
ORF1ab/nsp3681E681KGaaAaa11AY.9.20.000037
ORF1ab/nsp3681E681EgaAgaG11AY.980.000079
ORF1ab/nsp3681E681delGAA---11AY.990.001049
ORF1ab/nsp3681E681AgAagCa11B.10.000009
ORF1ab/nsp3681E681KGaaAaa11B.10.000009
ORF1ab/nsp3681E681LGAACTC11B.10.000009
ORF1ab/nsp3681E681delGAA---11B.1.10.000018
ORF1ab/nsp3681E681XGaaTaa11B.1.10.000018
ORF1ab/nsp3681E681XGaaTaa11B.1.1.10.000327
ORF1ab/nsp3681E681EgaAgaG11B.1.1.100.001115
ORF1ab/nsp3681E681GgAagGa11B.1.1.1210.002427
ORF1ab/nsp3681E681delGAA---11B.1.1.1420.017544
ORF1ab/nsp3681E681EgaAgaG11B.1.1.1710.003676
ORF1ab/nsp3681E681GgAagGa11B.1.1.1740.003378
ORF1ab/nsp3681E681GgAagGa11B.1.1.2140.000055
ORF1ab/nsp3681E681DgaAgaC11B.1.1.2320.001815
ORF1ab/nsp3681E681AgAagCa11B.1.1.2880.001916
ORF1ab/nsp3681E681NGaAAaC11B.1.1.3060.000438
ORF1ab/nsp3681E681delGAA---11B.1.1.3110.000358
ORF1ab/nsp3681E681delGAA---11B.1.1.4090.002833
ORF1ab/nsp3681E681AgAagCa11B.1.1.4200.001006
ORF1ab/nsp3681E681AgAagCa11B.1.1.440.00241
ORF1ab/nsp3681E681VgAagTa11B.1.1.70.000001
ORF1ab/nsp3681E681del2gAAg--11B.1.1.70.000001
ORF1ab/nsp3681E681GgAagGa11B.1.1110.001175
ORF1ab/nsp3681E681delGAA---11B.1.1490.003425
ORF1ab/nsp3681E681delGAA---11B.1.1570.002985
ORF1ab/nsp3681E681delGAA---11B.1.160.70.002079
ORF1ab/nsp3681E681delGAA---11B.1.1770.000013
ORF1ab/nsp3681E681delGAA---11B.1.177.160.000664
ORF1ab/nsp3681E681XGaaTaa11B.1.177.310.011494
ORF1ab/nsp3681E681delGAA---11B.1.177.500.004695
ORF1ab/nsp3681E681delGAA---11B.1.177.570.000281
ORF1ab/nsp3681E681delGAA---11B.1.177.630.002703
ORF1ab/nsp3681E681KGaaAaa11B.1.177.650.000665
ORF1ab/nsp3681E681delGAA---11B.1.177.810.000189
ORF1ab/nsp3681E681EgaAgaG11B.1.177.820.000477
ORF1ab/nsp3681E681AgAagCa11B.1.20.000009
ORF1ab/nsp3681E681del1gAag-a11B.1.2060.000816
ORF1ab/nsp3681E681delGAA---11B.1.2100.002132
ORF1ab/nsp3681E681delGAA---11B.1.2430.00007
ORF1ab/nsp3681E681delGAA---11B.1.2580.000067
ORF1ab/nsp3681E681delGAA---11B.1.3190.003049
ORF1ab/nsp3681E681DgaAgaC11B.1.3670.000792
ORF1ab/nsp3681E681QGaaCaa11B.1.3690.000285
ORF1ab/nsp3681E681DgaAgaT11B.1.3960.000706
ORF1ab/nsp3681E681EgaAgaG11B.1.5650.00081
ORF1ab/nsp3681E681DgaAgaC11B.1.5750.000303
ORF1ab/nsp3681E681DgaAgaC11B.1.5970.00463
ORF1ab/nsp3681E681XGaaTaa11B.1.5990.00365
ORF1ab/nsp3681E681XGaaTaa11B.1.6120.002653
ORF1ab/nsp3681E681delGAA---11B.1.617.10.000129
ORF1ab/nsp3681E681XGaaTaa11B.1.617.20.000004
ORF1ab/nsp3681E681DgaAgaC11B.1.617.20.000004
ORF1ab/nsp3681E681AgAagCa11B.1.617.20.000004
ORF1ab/nsp3681E681del1Gaa-aa11B.1.617.20.000004
ORF1ab/nsp3681E681KGaaAaa11B.1.617.20.000004
ORF1ab/nsp3681E681delGAA---11B.1.617.20.000004
ORF1ab/nsp3681E681XGaaTaa11B.1.619.10.000641
ORF1ab/nsp3681E681delGAA---11B.1.6210.000089
ORF1ab/nsp3681E681delGAA---11B.150.017544
ORF1ab/nsp3681E681EgaAgaG11D.20.000075
ORF1ab/nsp3681E681delGAA---11P.1.10.000318
ORF1ab/nsp3681E681delGAA---11Q.80.000165