CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 678

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3678T678IT1496InonsynaCaaTa187561875614751-4753
ORF1ab/nsp3678T678AT1496AnonsynAcaGca24124114751-4753
ORF1ab/nsp3678T678TT1496TsynacAacG1131040.9203544751-4753
ORF1ab/nsp3678T678TT1496TsynacAacT11360.05309734751-4753
ORF1ab/nsp3678T678TT1496TsynacAacC11330.02654874751-4753
ORF1ab/nsp3678T678KT1496KnonsynaCaaAa787814751-4753
ORF1ab/nsp3678T678delT1496deldelACA---636314751-4753
ORF1ab/nsp3678T678del1T1496del1delacAac-121214751-4753
ORF1ab/nsp3678T678RT1496RnonsynaCaaGa750.7142864751-4753
ORF1ab/nsp3678T678RT1496RnonsynACaCGa720.2857144751-4753
ORF1ab/nsp3678T678del2T1496del2delACa--a430.754751-4753
ORF1ab/nsp3678T678del2T1496del2delaCAa--410.254751-4753
ORF1ab/nsp3678T678PT1496PnonsynAcaCca3314751-4753
ORF1ab/nsp3678T678ST1496SnonsynAcaTca2214751-4753
ORF1ab/nsp3678T678VT1496VnonsynACaGTa1114751-4753
ORF1ab/nsp3678T678LT1496LnonsynACaCTa1114751-4753

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3678T678IaCaaTa1875618756All0.003587
ORF1ab/nsp3678T678IaCaaTa1196911969AY.230.834833
ORF1ab/nsp3678T678IaCaaTa23922392AY.23.10.998331
ORF1ab/nsp3678T678IaCaaTa14821482B.1.1.70.001327
ORF1ab/nsp3678T678IaCaaTa395395AY.40.000615
ORF1ab/nsp3678T678AAcaGca241241All0.000046
ORF1ab/nsp3678T678IaCaaTa220220AY.430.000975
ORF1ab/nsp3678T678AAcaGca203203AY.250.001221
ORF1ab/nsp3678T678IaCaaTa169169B.1.617.20.000636
ORF1ab/nsp3678T678IaCaaTa168168AY.440.001023
ORF1ab/nsp3678T678IaCaaTa154154AY.50.00318
ORF1ab/nsp3678T678TacAacG104113All0.00002
ORF1ab/nsp3678T678TacAacT6113All0.000001
ORF1ab/nsp3678T678TacAacC3113All0.000001
ORF1ab/nsp3678T678IaCaaTa8787B.1.1600.002713
ORF1ab/nsp3678T678IaCaaTa8686B.1.4290.002023
ORF1ab/nsp3678T678IaCaaTa8484AY.30.000835
ORF1ab/nsp3678T678IaCaaTa8282B.1.5260.001927
ORF1ab/nsp3678T678IaCaaTa8181AY.1030.000503
ORF1ab/nsp3678T678IaCaaTa8181AY.250.000487
ORF1ab/nsp3678T678KaCaaAa7878All0.000015
ORF1ab/nsp3678T678IaCaaTa7575B.1.20.00066
ORF1ab/nsp3678T678TacAacG7072B.1.1.70.000063
ORF1ab/nsp3678T678TacAacT272B.1.1.70.000002
ORF1ab/nsp3678T678IaCaaTa6666AY.390.001631
ORF1ab/nsp3678T678delACA---6363All0.000012
ORF1ab/nsp3678T678IaCaaTa5858B.1.1770.000764
ORF1ab/nsp3678T678IaCaaTa5858B.1.2360.119097
ORF1ab/nsp3678T678IaCaaTa4949B.1.160.70.101871
ORF1ab/nsp3678T678IaCaaTa4141B.10.000376
ORF1ab/nsp3678T678KaCaaAa4040B.1.1.70.000036
ORF1ab/nsp3678T678IaCaaTa3333B.1.10.000599
ORF1ab/nsp3678T678IaCaaTa3333P.10.00052
ORF1ab/nsp3678T678IaCaaTa3131B.1.1180.208054
ORF1ab/nsp3678T678IaCaaTa2929AY.290.000457
ORF1ab/nsp3678T678IaCaaTa2929AY.46.20.018424
ORF1ab/nsp3678T678IaCaaTa2626AY.240.011207
ORF1ab/nsp3678T678IaCaaTa2424B.1.177.820.011456
ORF1ab/nsp3678T678IaCaaTa2424B.1.177.860.004403
ORF1ab/nsp3678T678IaCaaTa2121AY.870.017485
ORF1ab/nsp3678T678IaCaaTa2020AY.1020.00053
ORF1ab/nsp3678T678delACA---2020B.1.1.70.000018
ORF1ab/nsp3678T678IaCaaTa1919AY.200.000738
ORF1ab/nsp3678T678IaCaaTa1919AY.470.000591
ORF1ab/nsp3678T678IaCaaTa1919B.1.1.2140.001054
ORF1ab/nsp3678T678IaCaaTa1818AY.1200.000669
ORF1ab/nsp3678T678IaCaaTa1818AY.330.001202
ORF1ab/nsp3678T678KaCaaAa1818B.1.1770.000237
ORF1ab/nsp3678T678IaCaaTa1818B.1.3510.000535
ORF1ab/nsp3678T678IaCaaTa1717AY.350.003962
ORF1ab/nsp3678T678IaCaaTa1414AY.46.50.002778
ORF1ab/nsp3678T678IaCaaTa1414B.1.177.320.018893
ORF1ab/nsp3678T678IaCaaTa1313AY.980.001027
ORF1ab/nsp3678T678del1acAac-1212All0.000002
ORF1ab/nsp3678T678IaCaaTa1212P.20.00224
ORF1ab/nsp3678T678IaCaaTa1111AY.420.000443
ORF1ab/nsp3678T678IaCaaTa1111AY.570.007218
ORF1ab/nsp3678T678IaCaaTa1111B.1.1.2700.113402
ORF1ab/nsp3678T678IaCaaTa1010AY.116.10.003114
ORF1ab/nsp3678T678IaCaaTa1010AY.460.001041
ORF1ab/nsp3678T678IaCaaTa99AY.1170.000761
ORF1ab/nsp3678T678IaCaaTa99AY.1190.000318
ORF1ab/nsp3678T678IaCaaTa99AY.750.000504
ORF1ab/nsp3678T678IaCaaTa99B.1.1.5190.000357
ORF1ab/nsp3678T678AAcaGca99B.1.1.70.000008
ORF1ab/nsp3678T678IaCaaTa99R.10.00081
ORF1ab/nsp3678T678IaCaaTa88B.1.1.1750.615385
ORF1ab/nsp3678T678IaCaaTa88B.1.1.390.004077
ORF1ab/nsp3678T678IaCaaTa88B.1.177.210.000612
ORF1ab/nsp3678T678IaCaaTa88B.1.5960.000697
ORF1ab/nsp3678T678IaCaaTa88Q.10.001011
ORF1ab/nsp3678T678IaCaaTa88Q.80.001319
ORF1ab/nsp3678T678RaCaaGa57All0.000001
ORF1ab/nsp3678T678RACaCGa27All0
ORF1ab/nsp3678T678TacAacG77AY.260.000198
ORF1ab/nsp3678T678AAcaGca77AY.30.00007
ORF1ab/nsp3678T678IaCaaTa77B.1.4270.000353
ORF1ab/nsp3678T678IaCaaTa66AY.60.000247
ORF1ab/nsp3678T678IaCaaTa66B.1.1.2220.001224
ORF1ab/nsp3678T678IaCaaTa66B.1.1.2840.000644
ORF1ab/nsp3678T678IaCaaTa66B.1.1.3680.018519
ORF1ab/nsp3678T678IaCaaTa66B.1.2580.000399
ORF1ab/nsp3678T678IaCaaTa66B.1.6180.024194
ORF1ab/nsp3678T678IaCaaTa55AY.260.000142
ORF1ab/nsp3678T678IaCaaTa55AY.4.20.000108
ORF1ab/nsp3678T678IaCaaTa55AY.75.10.000902
ORF1ab/nsp3678T678IaCaaTa55AY.790.006053
ORF1ab/nsp3678T678IaCaaTa55AY.850.002136
ORF1ab/nsp3678T678IaCaaTa55B.1.1.4340.001743
ORF1ab/nsp3678T678RaCaaGa55B.1.1.70.000004
ORF1ab/nsp3678T678IaCaaTa55B.1.177.750.005203
ORF1ab/nsp3678T678IaCaaTa55B.1.3490.003574
ORF1ab/nsp3678T678IaCaaTa55B.1.36.10.005701
ORF1ab/nsp3678T678IaCaaTa55B.1.438.10.000536
ORF1ab/nsp3678T678IaCaaTa55B.1.5990.018248
ORF1ab/nsp3678T678IaCaaTa44A.2.50.001996
ORF1ab/nsp3678T678del2ACa--a34All0.000001
ORF1ab/nsp3678T678del2aCAa--14All0
ORF1ab/nsp3678T678IaCaaTa44AY.1000.000184
ORF1ab/nsp3678T678IaCaaTa44AY.1100.000451
ORF1ab/nsp3678T678IaCaaTa44AY.16.10.00188
ORF1ab/nsp3678T678IaCaaTa44AY.340.000388
ORF1ab/nsp3678T678IaCaaTa44AY.360.000593
ORF1ab/nsp3678T678IaCaaTa44AY.410.001176
ORF1ab/nsp3678T678TacAacG34AY.430.000013
ORF1ab/nsp3678T678TacAacT14AY.430.000004
ORF1ab/nsp3678T678IaCaaTa44AY.450.000487
ORF1ab/nsp3678T678IaCaaTa44AY.46.40.000658
ORF1ab/nsp3678T678IaCaaTa44AY.640.002381
ORF1ab/nsp3678T678IaCaaTa44AY.830.006897
ORF1ab/nsp3678T678IaCaaTa44AY.9.10.000335
ORF1ab/nsp3678T678IaCaaTa44B.1.177.450.001525
ORF1ab/nsp3678T678IaCaaTa44B.1.177.620.004768
ORF1ab/nsp3678T678IaCaaTa44B.1.214.20.002398
ORF1ab/nsp3678T678IaCaaTa44B.1.2340.000528
ORF1ab/nsp3678T678IaCaaTa44B.1.2430.000278
ORF1ab/nsp3678T678IaCaaTa44B.1.3690.001141
ORF1ab/nsp3678T678IaCaaTa44B.1.5610.001588
ORF1ab/nsp3678T678TacAacG34B.1.617.20.000011
ORF1ab/nsp3678T678TacAacT14B.1.617.20.000004
ORF1ab/nsp3678T678IaCaaTa44B.1.6370.000292
ORF1ab/nsp3678T678IaCaaTa44C.370.000464
ORF1ab/nsp3678T678IaCaaTa44P.1.140.000191
ORF1ab/nsp3678T678PAcaCca33All0.000001
ORF1ab/nsp3678T678TacAacG33AY.1030.000019
ORF1ab/nsp3678T678IaCaaTa33AY.1180.000188
ORF1ab/nsp3678T678TacAacG33AY.40.000005
ORF1ab/nsp3678T678AAcaGca33AY.440.000018
ORF1ab/nsp3678T678IaCaaTa33AY.540.000286
ORF1ab/nsp3678T678IaCaaTa33AY.90.000203
ORF1ab/nsp3678T678IaCaaTa33AY.98.10.000145
ORF1ab/nsp3678T678TacAacC23B.10.000018
ORF1ab/nsp3678T678TacAacT13B.10.000009
ORF1ab/nsp3678T678IaCaaTa33B.1.1.3480.002389
ORF1ab/nsp3678T678IaCaaTa33B.1.1580.071429
ORF1ab/nsp3678T678IaCaaTa33B.1.360.000438
ORF1ab/nsp3678T678IaCaaTa33B.1.36.180.001261
ORF1ab/nsp3678T678IaCaaTa33B.1.6200.002838
ORF1ab/nsp3678T678IaCaaTa33P.1.150.000697
ORF1ab/nsp3678T678RACaCGa220.111111
ORF1ab/nsp3678T678delACA---220.111111
ORF1ab/nsp3678T678del2ACa--a220.111111
ORF1ab/nsp3678T678AAcaGca22A.2.50.000998
ORF1ab/nsp3678T678IaCaaTa22AD.20.000438
ORF1ab/nsp3678T678SAcaTca22All0
ORF1ab/nsp3678T678IaCaaTa22AY.1070.000932
ORF1ab/nsp3678T678TacAacG22AY.1140.000462
ORF1ab/nsp3678T678IaCaaTa22AY.1160.000574
ORF1ab/nsp3678T678IaCaaTa22AY.1210.000271
ORF1ab/nsp3678T678IaCaaTa22AY.140.000176
ORF1ab/nsp3678T678IaCaaTa22AY.170.016393
ORF1ab/nsp3678T678TacAacG22AY.250.000012
ORF1ab/nsp3678T678IaCaaTa22AY.270.000129
ORF1ab/nsp3678T678AAcaGca22AY.390.000049
ORF1ab/nsp3678T678TacAacG22AY.390.000049
ORF1ab/nsp3678T678delACA---22AY.40.000003
ORF1ab/nsp3678T678del1acAac-22AY.40.000003
ORF1ab/nsp3678T678delACA---22AY.4.50.000215
ORF1ab/nsp3678T678delACA---22AY.440.000012
ORF1ab/nsp3678T678TacAacG22AY.440.000012
ORF1ab/nsp3678T678KaCaaAa22AY.440.000012
ORF1ab/nsp3678T678IaCaaTa22AY.610.00021
ORF1ab/nsp3678T678IaCaaTa22AY.680.000547
ORF1ab/nsp3678T678IaCaaTa22AY.7.20.001119
ORF1ab/nsp3678T678IaCaaTa22AY.880.001768
ORF1ab/nsp3678T678IaCaaTa22AY.9.20.000073
ORF1ab/nsp3678T678IaCaaTa22AY.920.000575
ORF1ab/nsp3678T678IaCaaTa22AY.99.20.000184
ORF1ab/nsp3678T678IaCaaTa22AZ.10.001735
ORF1ab/nsp3678T678delACA---22B.10.000018
ORF1ab/nsp3678T678KaCaaAa22B.10.000018
ORF1ab/nsp3678T678TacAacG22B.1.10.000036
ORF1ab/nsp3678T678IaCaaTa22B.1.1.1760.000879
ORF1ab/nsp3678T678IaCaaTa22B.1.1.3060.000877
ORF1ab/nsp3678T678IaCaaTa22B.1.1.3110.000716
ORF1ab/nsp3678T678IaCaaTa22B.1.1.3120.003824
ORF1ab/nsp3678T678IaCaaTa22B.1.1.480.005747
ORF1ab/nsp3678T678del1acAac-22B.1.1.70.000002
ORF1ab/nsp3678T678IaCaaTa22B.1.1570.00597
ORF1ab/nsp3678T678IaCaaTa22B.1.177.170.001642
ORF1ab/nsp3678T678IaCaaTa22B.1.177.810.000379
ORF1ab/nsp3678T678IaCaaTa22B.1.258.170.000208
ORF1ab/nsp3678T678delACA---22B.1.360.000292
ORF1ab/nsp3678T678IaCaaTa22B.1.36.80.002
ORF1ab/nsp3678T678IaCaaTa22B.1.466.20.000782
ORF1ab/nsp3678T678IaCaaTa22B.1.564.10.003155
ORF1ab/nsp3678T678IaCaaTa22B.1.5880.00182
ORF1ab/nsp3678T678KaCaaAa22B.1.617.10.000258
ORF1ab/nsp3678T678delACA---22B.1.617.20.000008
ORF1ab/nsp3678T678delACA---22B.1.6190.001742
ORF1ab/nsp3678T678IaCaaTa22B.1.619.10.001283
ORF1ab/nsp3678T678IaCaaTa22B.6.60.001778
ORF1ab/nsp3678T678delACA---22P.10.000032
ORF1ab/nsp3678T678KaCaaAa22P.1.100.000539
ORF1ab/nsp3678T678IaCaaTa22P.1.120.000968
ORF1ab/nsp3678T678AAcaGca22P.1.140.000096
ORF1ab/nsp3678T678IaCaaTa22Q.20.001227
ORF1ab/nsp3678T678IaCaaTa11A0.000387
ORF1ab/nsp3678T678delACA---11A.2.20.001689
ORF1ab/nsp3678T678PAcaCca11A.2.40.003367
ORF1ab/nsp3678T678LACaCTa11All0
ORF1ab/nsp3678T678VACaGTa11All0
ORF1ab/nsp3678T678IaCaaTa11AY.10.000396
ORF1ab/nsp3678T678IaCaaTa11AY.100.00053
ORF1ab/nsp3678T678IaCaaTa11AY.1010.00049
ORF1ab/nsp3678T678TacAacT11AY.1020.000027
ORF1ab/nsp3678T678IaCaaTa11AY.1080.001103
ORF1ab/nsp3678T678KaCaaAa11AY.1100.000113
ORF1ab/nsp3678T678delACA---11AY.1130.000142
ORF1ab/nsp3678T678IaCaaTa11AY.1130.000142
ORF1ab/nsp3678T678delACA---11AY.1200.000037
ORF1ab/nsp3678T678KaCaaAa11AY.120.10.000321
ORF1ab/nsp3678T678IaCaaTa11AY.120.10.000321
ORF1ab/nsp3678T678TacAacG11AY.130.000161
ORF1ab/nsp3678T678IaCaaTa11AY.160.00038
ORF1ab/nsp3678T678delACA---11AY.250.000006
ORF1ab/nsp3678T678KaCaaAa11AY.260.000028
ORF1ab/nsp3678T678IaCaaTa11AY.3.10.000085
ORF1ab/nsp3678T678AAcaGca11AY.3.10.000085
ORF1ab/nsp3678T678IaCaaTa11AY.300.000396
ORF1ab/nsp3678T678IaCaaTa11AY.39.10.00004
ORF1ab/nsp3678T678del2aCAa--11AY.40.000002
ORF1ab/nsp3678T678KaCaaAa11AY.40.000002
ORF1ab/nsp3678T678AAcaGca11AY.40.000002
ORF1ab/nsp3678T678IaCaaTa11AY.4.50.000107
ORF1ab/nsp3678T678del1acAac-11AY.4.50.000107
ORF1ab/nsp3678T678TacAacG11AY.420.00004
ORF1ab/nsp3678T678AAcaGca11AY.430.000004
ORF1ab/nsp3678T678KaCaaAa11AY.430.000004
ORF1ab/nsp3678T678IaCaaTa11AY.46.10.001027
ORF1ab/nsp3678T678AAcaGca11AY.470.000031
ORF1ab/nsp3678T678IaCaaTa11AY.480.000465
ORF1ab/nsp3678T678KaCaaAa11AY.50.000021
ORF1ab/nsp3678T678IaCaaTa11AY.5.30.000337
ORF1ab/nsp3678T678IaCaaTa11AY.5.40.000277
ORF1ab/nsp3678T678IaCaaTa11AY.500.000799
ORF1ab/nsp3678T678IaCaaTa11AY.620.000436
ORF1ab/nsp3678T678IaCaaTa11AY.650.000533
ORF1ab/nsp3678T678AAcaGca11AY.680.000274
ORF1ab/nsp3678T678IaCaaTa11AY.70.000196
ORF1ab/nsp3678T678IaCaaTa11AY.700.000209
ORF1ab/nsp3678T678IaCaaTa11AY.740.000116
ORF1ab/nsp3678T678IaCaaTa11AY.770.001127
ORF1ab/nsp3678T678IaCaaTa11AY.80.000606
ORF1ab/nsp3678T678del1acAac-11AY.810.001992
ORF1ab/nsp3678T678IaCaaTa11AY.840.000437
ORF1ab/nsp3678T678IaCaaTa11AY.860.00083
ORF1ab/nsp3678T678AAcaGca11AY.9.20.000037
ORF1ab/nsp3678T678IaCaaTa11AY.930.000273
ORF1ab/nsp3678T678IaCaaTa11AY.960.002075
ORF1ab/nsp3678T678delACA---11AY.990.001049
ORF1ab/nsp3678T678IaCaaTa11B0.000128
ORF1ab/nsp3678T678AAcaGca11B.10.000009
ORF1ab/nsp3678T678del1acAac-11B.10.000009
ORF1ab/nsp3678T678delACA---11B.1.10.000018
ORF1ab/nsp3678T678PAcaCca11B.1.10.000018
ORF1ab/nsp3678T678del1acAac-11B.1.10.000018
ORF1ab/nsp3678T678IaCaaTa11B.1.1.1170.009709
ORF1ab/nsp3678T678IaCaaTa11B.1.1.1410.002012
ORF1ab/nsp3678T678delACA---11B.1.1.1420.017544
ORF1ab/nsp3678T678IaCaaTa11B.1.1.1930.111111
ORF1ab/nsp3678T678IaCaaTa11B.1.1.2200.001859
ORF1ab/nsp3678T678IaCaaTa11B.1.1.2310.003096
ORF1ab/nsp3678T678IaCaaTa11B.1.1.2370.005405
ORF1ab/nsp3678T678IaCaaTa11B.1.1.250.000569
ORF1ab/nsp3678T678TacAacG11B.1.1.280.000311
ORF1ab/nsp3678T678del1acAac-11B.1.1.3110.000358
ORF1ab/nsp3678T678IaCaaTa11B.1.1.3170.000412
ORF1ab/nsp3678T678IaCaaTa11B.1.1.3180.000302
ORF1ab/nsp3678T678IaCaaTa11B.1.1.330.000421
ORF1ab/nsp3678T678IaCaaTa11B.1.1.370.000193
ORF1ab/nsp3678T678delACA---11B.1.1.4090.002833
ORF1ab/nsp3678T678IaCaaTa11B.1.1.4190.007407
ORF1ab/nsp3678T678IaCaaTa11B.1.1.4370.010417
ORF1ab/nsp3678T678SAcaTca11B.1.1.5190.00004
ORF1ab/nsp3678T678KaCaaAa11B.1.1.5190.00004
ORF1ab/nsp3678T678VACaGTa11B.1.1.70.000001
ORF1ab/nsp3678T678LACaCTa11B.1.1.70.000001
ORF1ab/nsp3678T678PAcaCca11B.1.1.70.000001
ORF1ab/nsp3678T678IaCaaTa11B.1.1100.004525
ORF1ab/nsp3678T678IaCaaTa11B.1.1280.000635
ORF1ab/nsp3678T678delACA---11B.1.1490.003425
ORF1ab/nsp3678T678delACA---11B.1.1570.002985
ORF1ab/nsp3678T678AAcaGca11B.1.160.110.005714
ORF1ab/nsp3678T678IaCaaTa11B.1.160.140.002119
ORF1ab/nsp3678T678delACA---11B.1.160.70.002079
ORF1ab/nsp3678T678delACA---11B.1.1770.000013
ORF1ab/nsp3678T678del1acAac-11B.1.177.160.000664
ORF1ab/nsp3678T678IaCaaTa11B.1.177.310.011494
ORF1ab/nsp3678T678delACA---11B.1.177.40.000211
ORF1ab/nsp3678T678del1acAac-11B.1.177.40.000211
ORF1ab/nsp3678T678IaCaaTa11B.1.177.410.0025
ORF1ab/nsp3678T678IaCaaTa11B.1.177.430.001477
ORF1ab/nsp3678T678IaCaaTa11B.1.177.440.000519
ORF1ab/nsp3678T678IaCaaTa11B.1.177.470.012987
ORF1ab/nsp3678T678delACA---11B.1.177.500.004695
ORF1ab/nsp3678T678IaCaaTa11B.1.177.530.002392
ORF1ab/nsp3678T678IaCaaTa11B.1.177.540.000606
ORF1ab/nsp3678T678del1acAac-11B.1.177.570.000281
ORF1ab/nsp3678T678IaCaaTa11B.1.177.600.000218
ORF1ab/nsp3678T678delACA---11B.1.177.630.002703
ORF1ab/nsp3678T678del2ACa--a11B.1.177.690.001484
ORF1ab/nsp3678T678IaCaaTa11B.1.177.720.00339
ORF1ab/nsp3678T678delACA---11B.1.177.810.000189
ORF1ab/nsp3678T678TacAacC11B.1.20.000009
ORF1ab/nsp3678T678delACA---11B.1.2100.002132
ORF1ab/nsp3678T678IaCaaTa11B.1.2210.000071
ORF1ab/nsp3678T678delACA---11B.1.2430.00007
ORF1ab/nsp3678T678delACA---11B.1.2580.000067
ORF1ab/nsp3678T678IaCaaTa11B.1.2740.011905
ORF1ab/nsp3678T678delACA---11B.1.3190.003049
ORF1ab/nsp3678T678delACA---11B.1.3510.00003
ORF1ab/nsp3678T678AAcaGca11B.1.36.310.001751
ORF1ab/nsp3678T678IaCaaTa11B.1.36.360.000602
ORF1ab/nsp3678T678IaCaaTa11B.1.3670.000792
ORF1ab/nsp3678T678IaCaaTa11B.1.3960.000706
ORF1ab/nsp3678T678IaCaaTa11B.1.4000.000429
ORF1ab/nsp3678T678KaCaaAa11B.1.4270.00005
ORF1ab/nsp3678T678KaCaaAa11B.1.4290.000024
ORF1ab/nsp3678T678IaCaaTa11B.1.4520.013699
ORF1ab/nsp3678T678TacAacG11B.1.4560.003268
ORF1ab/nsp3678T678IaCaaTa11B.1.466.10.007194
ORF1ab/nsp3678T678IaCaaTa11B.1.4700.001404
ORF1ab/nsp3678T678IaCaaTa11B.1.4800.002488
ORF1ab/nsp3678T678IaCaaTa11B.1.4990.00105
ORF1ab/nsp3678T678IaCaaTa11B.1.5090.000866
ORF1ab/nsp3678T678IaCaaTa11B.1.5250.000113
ORF1ab/nsp3678T678SAcaTca11B.1.5260.000024
ORF1ab/nsp3678T678IaCaaTa11B.1.5300.007143
ORF1ab/nsp3678T678IaCaaTa11B.1.5770.000687
ORF1ab/nsp3678T678IaCaaTa11B.1.5900.004545
ORF1ab/nsp3678T678IaCaaTa11B.1.5950.000261
ORF1ab/nsp3678T678AAcaGca11B.1.5960.000087
ORF1ab/nsp3678T678IaCaaTa11B.1.6050.005952
ORF1ab/nsp3678T678AAcaGca11B.1.617.10.000129
ORF1ab/nsp3678T678delACA---11B.1.617.10.000129
ORF1ab/nsp3678T678AAcaGca11B.1.617.20.000004
ORF1ab/nsp3678T678KaCaaAa11B.1.617.20.000004
ORF1ab/nsp3678T678IaCaaTa11B.1.6190.000871
ORF1ab/nsp3678T678KaCaaAa11B.1.619.10.000641
ORF1ab/nsp3678T678IaCaaTa11B.1.6210.000089
ORF1ab/nsp3678T678delACA---11B.1.6210.000089
ORF1ab/nsp3678T678IaCaaTa11B.1.621.10.000506
ORF1ab/nsp3678T678delACA---11B.150.017544
ORF1ab/nsp3678T678IaCaaTa11B.350.007812
ORF1ab/nsp3678T678IaCaaTa11B.400.000364
ORF1ab/nsp3678T678IaCaaTa11D.20.000075
ORF1ab/nsp3678T678TacAacG11P.10.000016
ORF1ab/nsp3678T678delACA---11P.1.10.000318
ORF1ab/nsp3678T678AAcaGca11P.1.130.000898
ORF1ab/nsp3678T678KaCaaAa11P.1.160.000374
ORF1ab/nsp3678T678IaCaaTa11P.1.170.000162
ORF1ab/nsp3678T678IaCaaTa11P.1.20.001156
ORF1ab/nsp3678T678IaCaaTa11P.1.70.000319
ORF1ab/nsp3678T678IaCaaTa11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.