CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 674

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3674S674SS1492SsyntcTtcC134800.5970154739-4741
ORF1ab/nsp3674S674SS1492SsyntcTtcG134420.3134334739-4741
ORF1ab/nsp3674S674SS1492SsyntcTtcA134120.08955224739-4741
ORF1ab/nsp3674S674delS1492deldelTCT---646414739-4741
ORF1ab/nsp3674S674FS1492FnonsyntCttTt242414739-4741
ORF1ab/nsp3674S674PS1492PnonsynTctCct13100.7692314739-4741
ORF1ab/nsp3674S674PS1492PnonsynTcTCcA1320.1538464739-4741
ORF1ab/nsp3674S674PS1492PnonsynTcTCcG1310.07692314739-4741
ORF1ab/nsp3674S674AS1492AnonsynTctGct111114739-4741
ORF1ab/nsp3674S674TS1492TnonsynTctAct101014739-4741
ORF1ab/nsp3674S674YS1492YnonsyntCttAt5514739-4741
ORF1ab/nsp3674S674CS1492CnonsyntCttGt540.84739-4741
ORF1ab/nsp3674S674CS1492CnonsyntCTtGC510.24739-4741
ORF1ab/nsp3674S674XS1492XnonsyntCTtAA4414739-4741
ORF1ab/nsp3674S674del1S1492del1deltcTtc-320.6666674739-4741
ORF1ab/nsp3674S674LS1492LnonsyntCTtTA310.3333334739-4741
ORF1ab/nsp3674S674LS1492LnonsynTCtCTt310.3333334739-4741
ORF1ab/nsp3674S674LS1492LnonsynTCTCTA310.3333334739-4741
ORF1ab/nsp3674S674del1S1492del1delTct-ct310.3333334739-4741
ORF1ab/nsp3674S674HS1492HnonsynTCtCAt1114739-4741
ORF1ab/nsp3674S674QS1492QnonsynTCTCAA1114739-4741
ORF1ab/nsp3674S674del2S1492del2delTCt--t1114739-4741

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3674S674StcTtcC80134All0.000015
ORF1ab/nsp3674S674StcTtcG42134All0.000008
ORF1ab/nsp3674S674StcTtcA12134All0.000002
ORF1ab/nsp3674S674delTCT---6464All0.000012
ORF1ab/nsp3674S674StcTtcC3838B.1.10.000689
ORF1ab/nsp3674S674FtCttTt2424All0.000005
ORF1ab/nsp3674S674delTCT---1919B.1.1.70.000017
ORF1ab/nsp3674S674StcTtcG1616B.1.1.4240.727273
ORF1ab/nsp3674S674StcTtcA715B.1.1.70.000006
ORF1ab/nsp3674S674StcTtcC615B.1.1.70.000005
ORF1ab/nsp3674S674StcTtcG215B.1.1.70.000002
ORF1ab/nsp3674S674PTctCct1013All0.000002
ORF1ab/nsp3674S674PTcTCcA213All0
ORF1ab/nsp3674S674PTcTCcG113All0
ORF1ab/nsp3674S674ATctGct1111All0.000002
ORF1ab/nsp3674S674TTctAct1010All0.000002
ORF1ab/nsp3674S674FtCttTt1010B.1.1.70.000009
ORF1ab/nsp3674S674StcTtcC57B.1.617.20.000019
ORF1ab/nsp3674S674StcTtcG27B.1.617.20.000008
ORF1ab/nsp3674S674YtCttAt55All0.000001
ORF1ab/nsp3674S674CtCttGt45All0.000001
ORF1ab/nsp3674S674CtCTtGC15All0
ORF1ab/nsp3674S674StcTtcC55AY.1030.000031
ORF1ab/nsp3674S674ATctGct55B.1.1.70.000004
ORF1ab/nsp3674S674delTCT---440.222222
ORF1ab/nsp3674S674XtCTtAA44All0.000001
ORF1ab/nsp3674S674StcTtcC44AY.40.000006
ORF1ab/nsp3674S674StcTtcG44AY.440.000024
ORF1ab/nsp3674S674del1tcTtc-23All0
ORF1ab/nsp3674S674LTCTCTA13All0
ORF1ab/nsp3674S674LtCTtTA13All0
ORF1ab/nsp3674S674del1Tct-ct13All0
ORF1ab/nsp3674S674LTCtCTt13All0
ORF1ab/nsp3674S674StcTtcG23AY.290.000032
ORF1ab/nsp3674S674StcTtcC13AY.290.000016
ORF1ab/nsp3674S674StcTtcG23AY.390.000049
ORF1ab/nsp3674S674StcTtcA13AY.390.000025
ORF1ab/nsp3674S674FtCttTt33AY.40.000005
ORF1ab/nsp3674S674delTCT---33AY.4.50.000322
ORF1ab/nsp3674S674PTctCct33B.10.000027
ORF1ab/nsp3674S674LTCtCTt13B.1.10.000018
ORF1ab/nsp3674S674LtCTtTA13B.1.10.000018
ORF1ab/nsp3674S674LTCTCTA13B.1.10.000018
ORF1ab/nsp3674S674StcTtcC23B.1.20.000018
ORF1ab/nsp3674S674StcTtcA13B.1.20.000009
ORF1ab/nsp3674S674FtCttTt33B.1.3960.002117
ORF1ab/nsp3674S674StcTtcG33B.1.4290.000071
ORF1ab/nsp3674S674TTctAct33P.1.140.000143
ORF1ab/nsp3674S674TTctAct220.111111
ORF1ab/nsp3674S674XtCTtAA220.111111
ORF1ab/nsp3674S674ATctGct22AY.1030.000012
ORF1ab/nsp3674S674CtCttGt12AY.430.000004
ORF1ab/nsp3674S674CtCTtGC12AY.430.000004
ORF1ab/nsp3674S674delTCT---22AY.440.000012
ORF1ab/nsp3674S674StcTtcC22AY.730.001331
ORF1ab/nsp3674S674YtCttAt22B.10.000018
ORF1ab/nsp3674S674delTCT---22B.10.000018
ORF1ab/nsp3674S674StcTtcC22B.10.000018
ORF1ab/nsp3674S674FtCttTt22B.1.10.000036
ORF1ab/nsp3674S674StcTtcG22B.1.1.2200.003717
ORF1ab/nsp3674S674TTctAct22B.1.1.70.000002
ORF1ab/nsp3674S674StcTtcC22B.1.1770.000026
ORF1ab/nsp3674S674StcTtcA22B.1.4270.000101
ORF1ab/nsp3674S674PTctCct12B.1.5960.000087
ORF1ab/nsp3674S674PTcTCcA12B.1.5960.000087
ORF1ab/nsp3674S674delTCT---22B.1.6190.001742
ORF1ab/nsp3674S674StcTtcG12B.1.619.10.000641
ORF1ab/nsp3674S674StcTtcC12B.1.619.10.000641
ORF1ab/nsp3674S674delTCT---22P.10.000032
ORF1ab/nsp3674S674delTCT---11A.2.20.001689
ORF1ab/nsp3674S674QTCTCAA11All0
ORF1ab/nsp3674S674del2TCt--t11All0
ORF1ab/nsp3674S674HTCtCAt11All0
ORF1ab/nsp3674S674StcTtcG11AM.40.003571
ORF1ab/nsp3674S674StcTtcG11AY.1040.001984
ORF1ab/nsp3674S674delTCT---11AY.1130.000142
ORF1ab/nsp3674S674StcTtcC11AY.1200.000037
ORF1ab/nsp3674S674delTCT---11AY.1200.000037
ORF1ab/nsp3674S674FtCttTt11AY.200.000039
ORF1ab/nsp3674S674StcTtcC11AY.230.00007
ORF1ab/nsp3674S674delTCT---11AY.250.000006
ORF1ab/nsp3674S674StcTtcC11AY.250.000006
ORF1ab/nsp3674S674FtCttTt11AY.30.00001
ORF1ab/nsp3674S674delTCT---11AY.30.00001
ORF1ab/nsp3674S674StcTtcC11AY.30.00001
ORF1ab/nsp3674S674del2TCt--t11AY.390.000025
ORF1ab/nsp3674S674ATctGct11AY.40.000002
ORF1ab/nsp3674S674PTctCct11AY.40.000002
ORF1ab/nsp3674S674delTCT---11AY.430.000004
ORF1ab/nsp3674S674StcTtcC11AY.430.000004
ORF1ab/nsp3674S674FtCttTt11AY.440.000006
ORF1ab/nsp3674S674ATctGct11AY.620.000436
ORF1ab/nsp3674S674delTCT---11AY.670.000464
ORF1ab/nsp3674S674TTctAct11AY.70.000196
ORF1ab/nsp3674S674StcTtcC11AY.820.001357
ORF1ab/nsp3674S674delTCT---11AY.840.000437
ORF1ab/nsp3674S674delTCT---11AY.990.001049
ORF1ab/nsp3674S674YtCttAt11B0.000128
ORF1ab/nsp3674S674PTctCct11B0.000128
ORF1ab/nsp3674S674del1tcTtc-11B.10.000009
ORF1ab/nsp3674S674TTctAct11B.10.000009
ORF1ab/nsp3674S674YtCttAt11B.1.10.000018
ORF1ab/nsp3674S674HTCtCAt11B.1.10.000018
ORF1ab/nsp3674S674XtCTtAA11B.1.10.000018
ORF1ab/nsp3674S674delTCT---11B.1.10.000018
ORF1ab/nsp3674S674QTCTCAA11B.1.10.000018
ORF1ab/nsp3674S674delTCT---11B.1.1.1420.017544
ORF1ab/nsp3674S674ATctGct11B.1.1.1940.00495
ORF1ab/nsp3674S674StcTtcG11B.1.1.2140.000055
ORF1ab/nsp3674S674TTctAct11B.1.1.3710.010417
ORF1ab/nsp3674S674StcTtcC11B.1.1.390.00051
ORF1ab/nsp3674S674delTCT---11B.1.1.4090.002833
ORF1ab/nsp3674S674PTctCct11B.1.1.70.000001
ORF1ab/nsp3674S674XtCTtAA11B.1.1.70.000001
ORF1ab/nsp3674S674CtCttGt11B.1.1.70.000001
ORF1ab/nsp3674S674delTCT---11B.1.1490.003425
ORF1ab/nsp3674S674StcTtcG11B.1.1490.003425
ORF1ab/nsp3674S674delTCT---11B.1.1570.002985
ORF1ab/nsp3674S674StcTtcC11B.1.160.280.002924
ORF1ab/nsp3674S674delTCT---11B.1.160.70.002079
ORF1ab/nsp3674S674delTCT---11B.1.1770.000013
ORF1ab/nsp3674S674delTCT---11B.1.177.500.004695
ORF1ab/nsp3674S674delTCT---11B.1.177.630.002703
ORF1ab/nsp3674S674delTCT---11B.1.177.690.001484
ORF1ab/nsp3674S674PTctCct11B.1.177.730.000566
ORF1ab/nsp3674S674CtCttGt11B.1.177.730.000566
ORF1ab/nsp3674S674delTCT---11B.1.177.810.000189
ORF1ab/nsp3674S674PTctCct11B.1.20.000009
ORF1ab/nsp3674S674FtCttTt11B.1.20.000009
ORF1ab/nsp3674S674CtCttGt11B.1.20.000009
ORF1ab/nsp3674S674delTCT---11B.1.2100.002132
ORF1ab/nsp3674S674StcTtcC11B.1.2410.000812
ORF1ab/nsp3674S674delTCT---11B.1.2430.00007
ORF1ab/nsp3674S674StcTtcC11B.1.2580.000067
ORF1ab/nsp3674S674delTCT---11B.1.2580.000067
ORF1ab/nsp3674S674delTCT---11B.1.3190.003049
ORF1ab/nsp3674S674StcTtcA11B.1.351.20.000303
ORF1ab/nsp3674S674PTcTCcG11B.1.360.000146
ORF1ab/nsp3674S674delTCT---11B.1.360.000146
ORF1ab/nsp3674S674YtCttAt11B.1.36.80.001
ORF1ab/nsp3674S674PTcTCcA11B.1.3660.004878
ORF1ab/nsp3674S674FtCttTt11B.1.4290.000024
ORF1ab/nsp3674S674StcTtcG11B.1.4970.000315
ORF1ab/nsp3674S674StcTtcG11B.1.5460.003704
ORF1ab/nsp3674S674PTctCct11B.1.5640.000426
ORF1ab/nsp3674S674StcTtcG11B.1.5650.00081
ORF1ab/nsp3674S674FtCttTt11B.1.5960.000087
ORF1ab/nsp3674S674delTCT---11B.1.617.10.000129
ORF1ab/nsp3674S674delTCT---11B.1.617.20.000004
ORF1ab/nsp3674S674ATctGct11B.1.617.20.000004
ORF1ab/nsp3674S674del1tcTtc-11B.1.6210.000089
ORF1ab/nsp3674S674delTCT---11B.1.6210.000089
ORF1ab/nsp3674S674StcTtcG11B.1.6280.000352
ORF1ab/nsp3674S674delTCT---11B.150.017544
ORF1ab/nsp3674S674delTCT---11P.1.10.000318
ORF1ab/nsp3674S674StcTtcC11P.1.140.000048
ORF1ab/nsp3674S674StcTtcC11P.60.003145
ORF1ab/nsp3674S674del1Tct-ct11U.30.003861