CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 667 & Codon = gcT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3667A667AA1485AsyngcGgcT483137480.7758234718-4720

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3667A667AgcGgcT37484831All0.000717
ORF1ab/nsp3667A667AgcGgcT553612B.1.1.70.000495
ORF1ab/nsp3667A667AgcGgcT164608AY.40.000255
ORF1ab/nsp3667A667AgcGgcT339339AY.1140.078345
ORF1ab/nsp3667A667AgcGgcT290337B.1.617.20.001092
ORF1ab/nsp3667A667AgcGgcT179197AY.1030.001111
ORF1ab/nsp3667A667AgcGgcT173173B.1.177.400.891753
ORF1ab/nsp3667A667AgcGgcT65141AY.250.000391
ORF1ab/nsp3667A667AgcGgcT141141B.1.3710.158249
ORF1ab/nsp3667A667AgcGgcT96132AY.430.000425
ORF1ab/nsp3667A667AgcGgcT125131B.1.1600.003898
ORF1ab/nsp3667A667AgcGgcT124124AY.46.60.008954
ORF1ab/nsp3667A667AgcGgcT98118AY.440.000597
ORF1ab/nsp3667A667AgcGgcT48107B.1.20.000423
ORF1ab/nsp3667A667AgcGgcT95104AY.1020.002519
ORF1ab/nsp3667A667AgcGgcT7397AY.30.000726
ORF1ab/nsp3667A667AgcGgcT8292AY.4.50.008814
ORF1ab/nsp3667A667AgcGgcT7481AY.200.002876
ORF1ab/nsp3667A667AgcGgcT3552B.10.000321
ORF1ab/nsp3667A667AgcGgcT4749P.10.00074
ORF1ab/nsp3667A667AgcGgcT4041AY.99.20.003686
ORF1ab/nsp3667A667AgcGgcT3939AY.90.002636
ORF1ab/nsp3667A667AgcGgcT3838B.1.4080.140221
ORF1ab/nsp3667A667AgcGgcT3636B.1.617.10.004643
ORF1ab/nsp3667A667AgcGgcT3535C.360.031876
ORF1ab/nsp3667A667AgcGgcT2634AY.330.001736
ORF1ab/nsp3667A667AgcGgcT3131AY.1070.014445
ORF1ab/nsp3667A667AgcGgcT2131AY.390.000519
ORF1ab/nsp3667A667AgcGgcT3030B.1.1.2840.003222
ORF1ab/nsp3667A667AgcGgcT2327B.1.10.000417
ORF1ab/nsp3667A667AgcGgcT2627B.1.4290.000612
ORF1ab/nsp3667A667AgcGgcT2525B.1.1.3280.423729
ORF1ab/nsp3667A667AgcGgcT1523AY.470.000467
ORF1ab/nsp3667A667AgcGgcT2021B.1.1770.000263
ORF1ab/nsp3667A667AgcGgcT1620AY.230.001116
ORF1ab/nsp3667A667AgcGgcT2020B.1.438.10.002145
ORF1ab/nsp3667A667AgcGgcT1919C.36.30.010777
ORF1ab/nsp3667A667AgcGgcT1818AY.420.000724
ORF1ab/nsp3667A667AgcGgcT218B.1.1.280.000622
ORF1ab/nsp3667A667AgcGgcT1616AY.1190.000565
ORF1ab/nsp3667A667AgcGgcT1616B.30.013289
ORF1ab/nsp3667A667AgcGgcT515AY.610.000524
ORF1ab/nsp3667A667AgcGgcT1414AY.116.10.00436
ORF1ab/nsp3667A667AgcGgcT1314AY.1180.000814
ORF1ab/nsp3667A667AgcGgcT1014AY.260.000283
ORF1ab/nsp3667A667AgcGgcT1314AY.290.000205
ORF1ab/nsp3667A667AgcGgcT714AY.50.000145
ORF1ab/nsp3667A667AgcGgcT1414B.1.4270.000707
ORF1ab/nsp3667A667AgcGgcT1313B.1.1.5190.000516
ORF1ab/nsp3667A667AgcGgcT813B.1.2580.000532
ORF1ab/nsp3667A667AgcGgcT1213B.1.3510.000357
ORF1ab/nsp3667A667AgcGgcT1112AY.1000.000506
ORF1ab/nsp3667A667AgcGgcT312AY.46.40.000494
ORF1ab/nsp3667A667AgcGgcT1112B.1.360.001605
ORF1ab/nsp3667A667AgcGgcT912B.1.5260.000212
ORF1ab/nsp3667A667AgcGgcT711AY.98.10.000339
ORF1ab/nsp3667A667AgcGgcT1111B.1.2340.001451
ORF1ab/nsp3667A667AgcGgcT1010AY.960.020747
ORF1ab/nsp3667A667AgcGgcT28A0.000774
ORF1ab/nsp3667A667AgcGgcT38B.1.1.2140.000166
ORF1ab/nsp3667A667AgcGgcT77A.270.011589
ORF1ab/nsp3667A667AgcGgcT77AY.340.000679
ORF1ab/nsp3667A667AgcGgcT47B.1.2430.000278
ORF1ab/nsp3667A667AgcGgcT46AY.9.20.000147
ORF1ab/nsp3667A667AgcGgcT56B.1.1.370.000964
ORF1ab/nsp3667A667AgcGgcT66B.1.6210.000531
ORF1ab/nsp3667A667AgcGgcT55AE.80.002445
ORF1ab/nsp3667A667AgcGgcT55AY.3.10.000426
ORF1ab/nsp3667A667AgcGgcT45AY.39.10.000158
ORF1ab/nsp3667A667AgcGgcT45B0.000511
ORF1ab/nsp3667A667AgcGgcT55B.1.1.4160.004525
ORF1ab/nsp3667A667AgcGgcT25B.1.3110.000549
ORF1ab/nsp3667A667AgcGgcT44AY.4.20.000087
ORF1ab/nsp3667A667AgcGgcT34AY.460.000312
ORF1ab/nsp3667A667AgcGgcT44AY.46.20.002541
ORF1ab/nsp3667A667AgcGgcT44AY.540.000381
ORF1ab/nsp3667A667AgcGgcT34AY.680.000821
ORF1ab/nsp3667A667AgcGgcT44AY.980.000316
ORF1ab/nsp3667A667AgcGgcT24B.1.1.3260.003521
ORF1ab/nsp3667A667AgcGgcT44B.1.1.4200.004024
ORF1ab/nsp3667A667AgcGgcT34B.1.1.500.002037
ORF1ab/nsp3667A667AgcGgcT44B.1.177.820.001909
ORF1ab/nsp3667A667AgcGgcT44B.1.1950.020101
ORF1ab/nsp3667A667AgcGgcT44B.1.2400.000862
ORF1ab/nsp3667A667AgcGgcT44B.1.5740.008602
ORF1ab/nsp3667A667AgcGgcT44B.1.6280.001409
ORF1ab/nsp3667A667AgcGgcT44P.20.000747
ORF1ab/nsp3667A667AgcGgcT33AY.450.000365
ORF1ab/nsp3667A667AgcGgcT13AY.550.000917
ORF1ab/nsp3667A667AgcGgcT33AY.700.000626
ORF1ab/nsp3667A667AgcGgcT33B.1.1.1980.004405
ORF1ab/nsp3667A667AgcGgcT33B.1.1.5250.016393
ORF1ab/nsp3667A667AgcGgcT33B.1.1110.003525
ORF1ab/nsp3667A667AgcGgcT33B.1.264.10.142857
ORF1ab/nsp3667A667AgcGgcT33B.1.5880.00273
ORF1ab/nsp3667A667AgcGgcT33B.1.6270.006061
ORF1ab/nsp3667A667AgcGgcT33B.1.6370.000219
ORF1ab/nsp3667A667AgcGgcT23P.1.140.000096
ORF1ab/nsp3667A667AgcGgcT22AY.100.00106
ORF1ab/nsp3667A667AgcGgcT22AY.1170.000169
ORF1ab/nsp3667A667AgcGgcT22AY.120.10.000642
ORF1ab/nsp3667A667AgcGgcT22AY.120.2.10.000997
ORF1ab/nsp3667A667AgcGgcT22AY.130.000322
ORF1ab/nsp3667A667AgcGgcT22AY.140.000176
ORF1ab/nsp3667A667AgcGgcT22AY.270.000129
ORF1ab/nsp3667A667AgcGgcT12AY.34.10.00051
ORF1ab/nsp3667A667AgcGgcT12AY.360.000148
ORF1ab/nsp3667A667AgcGgcT22AY.4.10.001475
ORF1ab/nsp3667A667AgcGgcT12AY.5.30.000337
ORF1ab/nsp3667A667AgcGgcT12AY.650.000533
ORF1ab/nsp3667A667AgcGgcT22AY.690.000373
ORF1ab/nsp3667A667AgcGgcT22AY.770.002255
ORF1ab/nsp3667A667AgcGgcT12AY.850.000427
ORF1ab/nsp3667A667AgcGgcT22AY.940.000885
ORF1ab/nsp3667A667AgcGgcT22B.1.1.2220.000408
ORF1ab/nsp3667A667AgcGgcT22B.1.1.250.001137
ORF1ab/nsp3667A667AgcGgcT12B.1.1.2770.000759
ORF1ab/nsp3667A667AgcGgcT12B.1.1.3060.000438
ORF1ab/nsp3667A667AgcGgcT22B.1.160.290.008439
ORF1ab/nsp3667A667AgcGgcT22B.1.177.810.000379
ORF1ab/nsp3667A667AgcGgcT22B.1.2210.000142
ORF1ab/nsp3667A667AgcGgcT22B.1.258.170.000208
ORF1ab/nsp3667A667AgcGgcT22B.1.258.30.00335
ORF1ab/nsp3667A667AgcGgcT22B.1.36.290.001035
ORF1ab/nsp3667A667AgcGgcT22B.1.4970.00063
ORF1ab/nsp3667A667AgcGgcT22B.1.5580.009132
ORF1ab/nsp3667A667AgcGgcT22B.1.5700.005882
ORF1ab/nsp3667A667AgcGgcT22B.550.0059
ORF1ab/nsp3667A667AgcGgcT22D.20.00015
ORF1ab/nsp3667A667AgcGgcT11A.290.005319
ORF1ab/nsp3667A667AgcGgcT11AD.20.000219
ORF1ab/nsp3667A667AgcGgcT11AY.1080.001103
ORF1ab/nsp3667A667AgcGgcT11AY.110.001339
ORF1ab/nsp3667A667AgcGgcT11AY.1130.000142
ORF1ab/nsp3667A667AgcGgcT11AY.1160.000287
ORF1ab/nsp3667A667AgcGgcT11AY.1210.000135
ORF1ab/nsp3667A667AgcGgcT11AY.160.00038
ORF1ab/nsp3667A667AgcGgcT11AY.210.001898
ORF1ab/nsp3667A667AgcGgcT11AY.320.000532
ORF1ab/nsp3667A667AgcGgcT11AY.380.000499
ORF1ab/nsp3667A667AgcGgcT11AY.4.40.000409
ORF1ab/nsp3667A667AgcGgcT11AY.400.000964
ORF1ab/nsp3667A667AgcGgcT11AY.580.000907
ORF1ab/nsp3667A667AgcGgcT11AY.730.000665
ORF1ab/nsp3667A667AgcGgcT11AY.740.000116
ORF1ab/nsp3667A667AgcGgcT11AY.750.000056
ORF1ab/nsp3667A667AgcGgcT11AY.810.001992
ORF1ab/nsp3667A667AgcGgcT11AY.9.10.000084
ORF1ab/nsp3667A667AgcGgcT11AY.920.000287
ORF1ab/nsp3667A667AgcGgcT11AZ.20.000821
ORF1ab/nsp3667A667AgcGgcT11B.1.1.10.000327
ORF1ab/nsp3667A667AgcGgcT11B.1.1.2160.00089
ORF1ab/nsp3667A667AgcGgcT11B.1.1.2940.001266
ORF1ab/nsp3667A667AgcGgcT11B.1.1.330.000421
ORF1ab/nsp3667A667AgcGgcT11B.1.1.3690.000446
ORF1ab/nsp3667A667AgcGgcT11B.1.1.3890.006061
ORF1ab/nsp3667A667AgcGgcT11B.1.1.4090.002833
ORF1ab/nsp3667A667AgcGgcT11B.1.1.4170.002703
ORF1ab/nsp3667A667AgcGgcT11B.1.110.30.000718
ORF1ab/nsp3667A667AgcGgcT11B.1.1260.001276
ORF1ab/nsp3667A667AgcGgcT11B.1.177.320.00135
ORF1ab/nsp3667A667AgcGgcT11B.1.177.40.000211
ORF1ab/nsp3667A667AgcGgcT11B.1.177.430.001477
ORF1ab/nsp3667A667AgcGgcT11B.1.177.50.001242
ORF1ab/nsp3667A667AgcGgcT11B.1.177.770.000726
ORF1ab/nsp3667A667AgcGgcT11B.1.2060.000816
ORF1ab/nsp3667A667AgcGgcT11B.1.2140.003663
ORF1ab/nsp3667A667AgcGgcT11B.1.214.10.02
ORF1ab/nsp3667A667AgcGgcT11B.1.214.20.0006
ORF1ab/nsp3667A667AgcGgcT11B.1.220.001318
ORF1ab/nsp3667A667AgcGgcT11B.1.2640.012346
ORF1ab/nsp3667A667AgcGgcT11B.1.3190.003049
ORF1ab/nsp3667A667AgcGgcT11B.1.36.160.001425
ORF1ab/nsp3667A667AgcGgcT11B.1.36.180.00042
ORF1ab/nsp3667A667AgcGgcT11B.1.3690.000285
ORF1ab/nsp3667A667AgcGgcT11B.1.466.10.007194
ORF1ab/nsp3667A667AgcGgcT11B.1.4680.005714
ORF1ab/nsp3667A667AgcGgcT11B.1.4710.002732
ORF1ab/nsp3667A667AgcGgcT11B.1.5170.000427
ORF1ab/nsp3667A667AgcGgcT11B.1.5640.000426
ORF1ab/nsp3667A667AgcGgcT11B.1.5680.001111
ORF1ab/nsp3667A667AgcGgcT11B.1.5950.000261
ORF1ab/nsp3667A667AgcGgcT11B.1.5960.000087
ORF1ab/nsp3667A667AgcGgcT11C.10.002392
ORF1ab/nsp3667A667AgcGgcT11C.390.018868
ORF1ab/nsp3667A667AgcGgcT11P.1.10.000318
ORF1ab/nsp3667A667AgcGgcT11P.1.160.000374
ORF1ab/nsp3667A667AgcGgcT11P.1.40.000977
ORF1ab/nsp3667A667AgcGgcT11P.1.70.000319
ORF1ab/nsp3667A667AgcGgcT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.