CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 667 | A667A | A1485A | syn | gcG | gcT | 4831 | 3748 | 0.775823 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667A | A1485A | syn | gcG | gcA | 4831 | 1055 | 0.218381 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667A | A1485A | syn | gcG | gcC | 4831 | 28 | 0.0057959 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667V | A1485V | nonsyn | gCg | gTg | 970 | 967 | 0.996907 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667V | A1485V | nonsyn | gCG | gTT | 970 | 2 | 0.00206186 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667V | A1485V | nonsyn | gCG | gTA | 970 | 1 | 0.00103093 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667T | A1485T | nonsyn | Gcg | Acg | 372 | 370 | 0.994624 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667T | A1485T | nonsyn | GcG | AcC | 372 | 2 | 0.00537634 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667del | A1485del | del | GCG | --- | 70 | 70 | 1 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667E | A1485E | nonsyn | gCg | gAg | 54 | 54 | 1 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667S | A1485S | nonsyn | Gcg | Tcg | 37 | 37 | 1 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667G | A1485G | nonsyn | gCg | gGg | 3 | 2 | 0.666667 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667G | A1485G | nonsyn | gCG | gGT | 3 | 1 | 0.333333 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667del1 | A1485del1 | del | Gcg | -cg | 2 | 1 | 0.5 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667del1 | A1485del1 | del | gcG | gc- | 2 | 1 | 0.5 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667P | A1485P | nonsyn | Gcg | Ccg | 1 | 1 | 1 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667del2 | A1485del2 | del | GCg | --g | 1 | 1 | 1 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667I | A1485I | nonsyn | GCG | ATA | 1 | 1 | 1 | 4718-4720 |
ORF1ab/nsp3 | 667 | A667D | A1485D | nonsyn | gCG | gAT | 1 | 1 | 1 | 4718-4720 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3748 | 4831 | All | 0.000717 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1055 | 4831 | All | 0.000202 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 28 | 4831 | All | 0.000005 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 967 | 970 | All | 0.000185 |
ORF1ab/nsp3 | 667 | A667V | gCG | gTT | 2 | 970 | All | 0 |
ORF1ab/nsp3 | 667 | A667V | gCG | gTA | 1 | 970 | All | 0 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 553 | 612 | B.1.1.7 | 0.000495 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 53 | 612 | B.1.1.7 | 0.000047 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 6 | 612 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 444 | 608 | AY.4 | 0.000691 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 164 | 608 | AY.4 | 0.000255 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 567 | 567 | B.1.1.7 | 0.000508 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 370 | 372 | All | 0.000071 |
ORF1ab/nsp3 | 667 | A667T | GcG | AcC | 2 | 372 | All | 0 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 339 | 339 | AY.114 | 0.078345 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 290 | 337 | B.1.617.2 | 0.001092 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 44 | 337 | B.1.617.2 | 0.000166 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 3 | 337 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 179 | 197 | AY.103 | 0.001111 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 16 | 197 | AY.103 | 0.000099 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 2 | 197 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 189 | 189 | AY.43 | 0.000837 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 173 | 173 | B.1.177.40 | 0.891753 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 163 | 163 | B.1.2 | 0.001435 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 76 | 141 | AY.25 | 0.000457 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 65 | 141 | AY.25 | 0.000391 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 141 | 141 | B.1.371 | 0.158249 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 96 | 132 | AY.43 | 0.000425 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 36 | 132 | AY.43 | 0.000159 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 125 | 131 | B.1.160 | 0.003898 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 6 | 131 | B.1.160 | 0.000187 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 124 | 124 | AY.46.6 | 0.008954 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 98 | 118 | AY.44 | 0.000597 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 19 | 118 | AY.44 | 0.000116 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 1 | 118 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 59 | 107 | B.1.2 | 0.00052 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 48 | 107 | B.1.2 | 0.000423 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 95 | 104 | AY.102 | 0.002519 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 6 | 104 | AY.102 | 0.000159 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 3 | 104 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 73 | 97 | AY.3 | 0.000726 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 24 | 97 | AY.3 | 0.000239 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 82 | 92 | AY.4.5 | 0.008814 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 10 | 92 | AY.4.5 | 0.001075 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 74 | 81 | AY.20 | 0.002876 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 7 | 81 | AY.20 | 0.000272 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 70 | 70 | All | 0.000013 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 67 | 67 | AY.4 | 0.000104 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 67 | 67 | AY.42 | 0.002695 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 54 | 54 | All | 0.00001 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 35 | 52 | B.1 | 0.000321 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 17 | 52 | B.1 | 0.000156 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 47 | 49 | P.1 | 0.00074 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 2 | 49 | P.1 | 0.000032 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 40 | 41 | AY.99.2 | 0.003686 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 41 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 39 | 39 | AY.9 | 0.002636 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 38 | 38 | B.1.408 | 0.140221 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 37 | 37 | All | 0.000007 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 36 | 36 | B.1.617.1 | 0.004643 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 35 | 35 | C.36 | 0.031876 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 26 | 34 | AY.33 | 0.001736 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 8 | 34 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 34 | 34 | AY.74 | 0.003932 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 31 | 31 | AY.107 | 0.014445 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 21 | 31 | AY.39 | 0.000519 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 10 | 31 | AY.39 | 0.000247 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 30 | 30 | B.1.1.284 | 0.003222 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 23 | 27 | B.1.1 | 0.000417 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 2 | 27 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 2 | 27 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 26 | 27 | B.1.429 | 0.000612 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 27 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 25 | 25 | B.1.1.328 | 0.423729 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 15 | 23 | AY.47 | 0.000467 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 8 | 23 | AY.47 | 0.000249 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 20 | 21 | B.1.177 | 0.000263 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 21 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 16 | 20 | AY.23 | 0.001116 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 4 | 20 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 20 | 20 | B.1.438.1 | 0.002145 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 19 | 19 | AY.95 | 0.01446 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 19 | 19 | C.36.3 | 0.010777 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 18 | 18 | AY.12 | 0.005689 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 18 | 18 | AY.25 | 0.000108 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 18 | 18 | AY.42 | 0.000724 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 16 | 18 | B.1.1.28 | 0.00498 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 18 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 18 | 18 | B.1.470 | 0.025281 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 17 | 17 | AY.7.1 | 0.001916 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 17 | 17 | B.1.1.171 | 0.0625 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 16 | 16 | AY.119 | 0.000565 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 16 | 16 | B.3 | 0.013289 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 10 | 15 | AY.61 | 0.001048 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 5 | 15 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 14 | 14 | AY.116.1 | 0.00436 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 13 | 14 | AY.118 | 0.000814 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 14 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 10 | 14 | AY.26 | 0.000283 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 4 | 14 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 13 | 14 | AY.29 | 0.000205 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 14 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 7 | 14 | AY.5 | 0.000145 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 7 | 14 | AY.5 | 0.000145 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 14 | 14 | B.1.427 | 0.000707 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 8 | 13 | B.1.258 | 0.000532 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 5 | 13 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 12 | 13 | B.1.351 | 0.000357 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 13 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 11 | 12 | AY.100 | 0.000506 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 12 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 9 | 12 | AY.46.4 | 0.001481 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 12 | AY.46.4 | 0.000494 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 11 | 12 | B.1.36 | 0.001605 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 12 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 9 | 12 | B.1.526 | 0.000212 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 3 | 12 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 7 | 11 | AY.98.1 | 0.000339 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 4 | 11 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 11 | 11 | B.1.1.214 | 0.00061 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 11 | 11 | B.1.234 | 0.001451 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 10 | 10 | AY.96 | 0.020747 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 6 | 8 | A | 0.002322 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 8 | A | 0.000774 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 5 | 8 | B.1.1.214 | 0.000277 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 8 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 8 | 8 | B.1.36.18 | 0.003361 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 7 | 7 | A.27 | 0.011589 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 7 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 3 | 7 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 6 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 2 | 6 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 5 | 6 | B.1.1.37 | 0.000964 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 6 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 5 | 5 | AE.8 | 0.002445 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 5 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 5 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 4 | 5 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 667 | A667V | gCG | gTA | 1 | 5 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 5 | B | 0.000511 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 1 | 5 | B | 0.000128 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 5 | 5 | B.1.1.416 | 0.004525 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 5 | 5 | B.1.221.2 | 0.02008 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 3 | 5 | B.1.311 | 0.000824 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 5 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 5 | 5 | B.1.324 | 0.008026 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 4 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 4 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 4 | AY.46.2 | 0.002541 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 4 | AY.68 | 0.000821 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 4 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 2 | 4 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 4 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 4 | B.1.1.420 | 0.004024 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 4 | B.1.1.50 | 0.002037 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 4 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 4 | B.1.177.82 | 0.001909 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 4 | B.1.195 | 0.020101 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 4 | B.1.574 | 0.008602 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 667 | A667G | gCg | gGg | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 667 | A667G | gCG | gGT | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 2 | 3 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 3 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 3 | 3 | B.1.1.198 | 0.004405 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 3 | B.1.1.198 | 0.004405 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 3 | B.1.1.525 | 0.016393 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 3 | B.1.264.1 | 0.142857 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 3 | 3 | B.1.417 | 0.085714 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 3 | B.1.588 | 0.00273 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 3 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 3 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 667 | A667T | GcG | AcC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 667 | A667V | gCG | gTT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 667 | A667del1 | gcG | gc- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 667 | A667del1 | Gcg | -cg | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 2 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 2 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 2 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 2 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 2 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 2 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 2 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 2 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 2 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 2 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 1 | 2 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 2 | 2 | B.1.160.28 | 0.005848 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | B.1.160.29 | 0.008439 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | B.1.258.3 | 0.00335 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | B.1.558 | 0.009132 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | B.1.570 | 0.005882 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | B.55 | 0.0059 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 2 | 2 | L.3 | 0.007092 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | A.29 | 0.005319 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 667 | A667del2 | GCg | --g | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 667 | A667P | Gcg | Ccg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 667 | A667D | gCG | gAT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 667 | A667I | GCG | ATA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 667 | A667del2 | GCg | --g | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 667 | A667del1 | gcG | gc- | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 667 | A667G | gCg | gGg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 667 | A667G | gCG | gGT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 667 | A667I | GCG | ATA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 1 | 1 | B.1.1.465 | 0.015625 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 667 | A667D | gCG | gAT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 667 | A667P | Gcg | Ccg | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 667 | A667del1 | Gcg | -cg | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.258.21 | 0.007752 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.428.2 | 0.033333 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 667 | A667S | Gcg | Tcg | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp3 | 667 | A667G | gCg | gGg | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.518 | 0.011765 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | B.1.622 | 0.012987 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 667 | A667E | gCg | gAg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 667 | A667A | gcG | gcA | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 667 | A667T | Gcg | Acg | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 667 | A667V | gCg | gTg | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 667 | A667del | GCG | --- | 1 | 1 | U.3 | 0.003861 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|