CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 667

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3667A667AA1485AsyngcGgcT483137480.7758234718-4720
ORF1ab/nsp3667A667AA1485AsyngcGgcA483110550.2183814718-4720
ORF1ab/nsp3667A667AA1485AsyngcGgcC4831280.00579594718-4720
ORF1ab/nsp3667A667VA1485VnonsyngCggTg9709670.9969074718-4720
ORF1ab/nsp3667A667VA1485VnonsyngCGgTT97020.002061864718-4720
ORF1ab/nsp3667A667VA1485VnonsyngCGgTA97010.001030934718-4720
ORF1ab/nsp3667A667TA1485TnonsynGcgAcg3723700.9946244718-4720
ORF1ab/nsp3667A667TA1485TnonsynGcGAcC37220.005376344718-4720
ORF1ab/nsp3667A667delA1485deldelGCG---707014718-4720
ORF1ab/nsp3667A667EA1485EnonsyngCggAg545414718-4720
ORF1ab/nsp3667A667SA1485SnonsynGcgTcg373714718-4720
ORF1ab/nsp3667A667GA1485GnonsyngCggGg320.6666674718-4720
ORF1ab/nsp3667A667GA1485GnonsyngCGgGT310.3333334718-4720
ORF1ab/nsp3667A667del1A1485del1delGcg-cg210.54718-4720
ORF1ab/nsp3667A667del1A1485del1delgcGgc-210.54718-4720
ORF1ab/nsp3667A667PA1485PnonsynGcgCcg1114718-4720
ORF1ab/nsp3667A667del2A1485del2delGCg--g1114718-4720
ORF1ab/nsp3667A667IA1485InonsynGCGATA1114718-4720
ORF1ab/nsp3667A667DA1485DnonsyngCGgAT1114718-4720

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3667A667AgcGgcT37484831All0.000717
ORF1ab/nsp3667A667AgcGgcA10554831All0.000202
ORF1ab/nsp3667A667AgcGgcC284831All0.000005
ORF1ab/nsp3667A667VgCggTg967970All0.000185
ORF1ab/nsp3667A667VgCGgTT2970All0
ORF1ab/nsp3667A667VgCGgTA1970All0
ORF1ab/nsp3667A667AgcGgcT553612B.1.1.70.000495
ORF1ab/nsp3667A667AgcGgcA53612B.1.1.70.000047
ORF1ab/nsp3667A667AgcGgcC6612B.1.1.70.000005
ORF1ab/nsp3667A667AgcGgcA444608AY.40.000691
ORF1ab/nsp3667A667AgcGgcT164608AY.40.000255
ORF1ab/nsp3667A667VgCggTg567567B.1.1.70.000508
ORF1ab/nsp3667A667TGcgAcg370372All0.000071
ORF1ab/nsp3667A667TGcGAcC2372All0
ORF1ab/nsp3667A667AgcGgcT339339AY.1140.078345
ORF1ab/nsp3667A667AgcGgcT290337B.1.617.20.001092
ORF1ab/nsp3667A667AgcGgcA44337B.1.617.20.000166
ORF1ab/nsp3667A667AgcGgcC3337B.1.617.20.000011
ORF1ab/nsp3667A667AgcGgcT179197AY.1030.001111
ORF1ab/nsp3667A667AgcGgcA16197AY.1030.000099
ORF1ab/nsp3667A667AgcGgcC2197AY.1030.000012
ORF1ab/nsp3667A667TGcgAcg189189AY.430.000837
ORF1ab/nsp3667A667AgcGgcT173173B.1.177.400.891753
ORF1ab/nsp3667A667VgCggTg163163B.1.20.001435
ORF1ab/nsp3667A667AgcGgcA76141AY.250.000457
ORF1ab/nsp3667A667AgcGgcT65141AY.250.000391
ORF1ab/nsp3667A667AgcGgcT141141B.1.3710.158249
ORF1ab/nsp3667A667AgcGgcT96132AY.430.000425
ORF1ab/nsp3667A667AgcGgcA36132AY.430.000159
ORF1ab/nsp3667A667AgcGgcT125131B.1.1600.003898
ORF1ab/nsp3667A667AgcGgcA6131B.1.1600.000187
ORF1ab/nsp3667A667AgcGgcT124124AY.46.60.008954
ORF1ab/nsp3667A667AgcGgcT98118AY.440.000597
ORF1ab/nsp3667A667AgcGgcA19118AY.440.000116
ORF1ab/nsp3667A667AgcGgcC1118AY.440.000006
ORF1ab/nsp3667A667AgcGgcA59107B.1.20.00052
ORF1ab/nsp3667A667AgcGgcT48107B.1.20.000423
ORF1ab/nsp3667A667AgcGgcT95104AY.1020.002519
ORF1ab/nsp3667A667AgcGgcC6104AY.1020.000159
ORF1ab/nsp3667A667AgcGgcA3104AY.1020.00008
ORF1ab/nsp3667A667AgcGgcT7397AY.30.000726
ORF1ab/nsp3667A667AgcGgcA2497AY.30.000239
ORF1ab/nsp3667A667AgcGgcT8292AY.4.50.008814
ORF1ab/nsp3667A667AgcGgcA1092AY.4.50.001075
ORF1ab/nsp3667A667AgcGgcT7481AY.200.002876
ORF1ab/nsp3667A667AgcGgcA781AY.200.000272
ORF1ab/nsp3667A667delGCG---7070All0.000013
ORF1ab/nsp3667A667VgCggTg6767AY.40.000104
ORF1ab/nsp3667A667TGcgAcg6767AY.420.002695
ORF1ab/nsp3667A667EgCggAg5454All0.00001
ORF1ab/nsp3667A667AgcGgcT3552B.10.000321
ORF1ab/nsp3667A667AgcGgcA1752B.10.000156
ORF1ab/nsp3667A667AgcGgcT4749P.10.00074
ORF1ab/nsp3667A667AgcGgcA249P.10.000032
ORF1ab/nsp3667A667AgcGgcT4041AY.99.20.003686
ORF1ab/nsp3667A667AgcGgcA141AY.99.20.000092
ORF1ab/nsp3667A667AgcGgcT3939AY.90.002636
ORF1ab/nsp3667A667AgcGgcT3838B.1.4080.140221
ORF1ab/nsp3667A667SGcgTcg3737All0.000007
ORF1ab/nsp3667A667AgcGgcT3636B.1.617.10.004643
ORF1ab/nsp3667A667AgcGgcT3535C.360.031876
ORF1ab/nsp3667A667AgcGgcT2634AY.330.001736
ORF1ab/nsp3667A667AgcGgcA834AY.330.000534
ORF1ab/nsp3667A667VgCggTg3434AY.740.003932
ORF1ab/nsp3667A667AgcGgcT3131AY.1070.014445
ORF1ab/nsp3667A667AgcGgcT2131AY.390.000519
ORF1ab/nsp3667A667AgcGgcA1031AY.390.000247
ORF1ab/nsp3667A667AgcGgcT3030B.1.1.2840.003222
ORF1ab/nsp3667A667AgcGgcT2327B.1.10.000417
ORF1ab/nsp3667A667AgcGgcA227B.1.10.000036
ORF1ab/nsp3667A667AgcGgcC227B.1.10.000036
ORF1ab/nsp3667A667AgcGgcT2627B.1.4290.000612
ORF1ab/nsp3667A667AgcGgcA127B.1.4290.000024
ORF1ab/nsp3667A667AgcGgcT2525B.1.1.3280.423729
ORF1ab/nsp3667A667AgcGgcT1523AY.470.000467
ORF1ab/nsp3667A667AgcGgcA823AY.470.000249
ORF1ab/nsp3667A667TGcgAcg2222B.1.1.70.00002
ORF1ab/nsp3667A667AgcGgcT2021B.1.1770.000263
ORF1ab/nsp3667A667AgcGgcA121B.1.1770.000013
ORF1ab/nsp3667A667AgcGgcT1620AY.230.001116
ORF1ab/nsp3667A667AgcGgcA420AY.230.000279
ORF1ab/nsp3667A667AgcGgcT2020B.1.438.10.002145
ORF1ab/nsp3667A667AgcGgcA1919AY.950.01446
ORF1ab/nsp3667A667delGCG---1919B.1.1.70.000017
ORF1ab/nsp3667A667VgCggTg1919B.1.617.20.000072
ORF1ab/nsp3667A667AgcGgcT1919C.36.30.010777
ORF1ab/nsp3667A667TGcgAcg1818AY.120.005689
ORF1ab/nsp3667A667EgCggAg1818AY.250.000108
ORF1ab/nsp3667A667AgcGgcT1818AY.420.000724
ORF1ab/nsp3667A667AgcGgcA1618B.1.1.280.00498
ORF1ab/nsp3667A667AgcGgcT218B.1.1.280.000622
ORF1ab/nsp3667A667AgcGgcA1818B.1.4700.025281
ORF1ab/nsp3667A667TGcgAcg1717AY.7.10.001916
ORF1ab/nsp3667A667AgcGgcA1717B.1.1.1710.0625
ORF1ab/nsp3667A667AgcGgcT1616AY.1190.000565
ORF1ab/nsp3667A667AgcGgcT1616B.30.013289
ORF1ab/nsp3667A667AgcGgcA1015AY.610.001048
ORF1ab/nsp3667A667AgcGgcT515AY.610.000524
ORF1ab/nsp3667A667AgcGgcT1414AY.116.10.00436
ORF1ab/nsp3667A667AgcGgcT1314AY.1180.000814
ORF1ab/nsp3667A667AgcGgcA114AY.1180.000063
ORF1ab/nsp3667A667AgcGgcT1014AY.260.000283
ORF1ab/nsp3667A667AgcGgcA414AY.260.000113
ORF1ab/nsp3667A667AgcGgcT1314AY.290.000205
ORF1ab/nsp3667A667AgcGgcA114AY.290.000016
ORF1ab/nsp3667A667AgcGgcA714AY.50.000145
ORF1ab/nsp3667A667AgcGgcT714AY.50.000145
ORF1ab/nsp3667A667AgcGgcT1414B.1.4270.000707
ORF1ab/nsp3667A667EgCggAg1313B.10.000119
ORF1ab/nsp3667A667AgcGgcT1313B.1.1.5190.000516
ORF1ab/nsp3667A667AgcGgcT813B.1.2580.000532
ORF1ab/nsp3667A667AgcGgcA513B.1.2580.000333
ORF1ab/nsp3667A667AgcGgcT1213B.1.3510.000357
ORF1ab/nsp3667A667AgcGgcA113B.1.3510.00003
ORF1ab/nsp3667A667AgcGgcT1112AY.1000.000506
ORF1ab/nsp3667A667AgcGgcA112AY.1000.000046
ORF1ab/nsp3667A667AgcGgcA912AY.46.40.001481
ORF1ab/nsp3667A667AgcGgcT312AY.46.40.000494
ORF1ab/nsp3667A667AgcGgcT1112B.1.360.001605
ORF1ab/nsp3667A667AgcGgcA112B.1.360.000146
ORF1ab/nsp3667A667AgcGgcT912B.1.5260.000212
ORF1ab/nsp3667A667AgcGgcA312B.1.5260.000071
ORF1ab/nsp3667A667AgcGgcT711AY.98.10.000339
ORF1ab/nsp3667A667AgcGgcA411AY.98.10.000194
ORF1ab/nsp3667A667TGcgAcg1111B.1.1.2140.00061
ORF1ab/nsp3667A667AgcGgcT1111B.1.2340.001451
ORF1ab/nsp3667A667AgcGgcT1010AY.960.020747
ORF1ab/nsp3667A667AgcGgcA68A0.002322
ORF1ab/nsp3667A667AgcGgcT28A0.000774
ORF1ab/nsp3667A667VgCggTg88AY.1030.00005
ORF1ab/nsp3667A667AgcGgcA58B.1.1.2140.000277
ORF1ab/nsp3667A667AgcGgcT38B.1.1.2140.000166
ORF1ab/nsp3667A667VgCggTg88B.1.36.180.003361
ORF1ab/nsp3667A667AgcGgcT77A.270.011589
ORF1ab/nsp3667A667AgcGgcT77AY.340.000679
ORF1ab/nsp3667A667AgcGgcT47B.1.2430.000278
ORF1ab/nsp3667A667AgcGgcA37B.1.2430.000209
ORF1ab/nsp3667A667VgCggTg77B.1.5250.000792
ORF1ab/nsp3667A667SGcgTcg77B.1.617.20.000026
ORF1ab/nsp3667A667VgCggTg66AY.430.000027
ORF1ab/nsp3667A667AgcGgcT46AY.9.20.000147
ORF1ab/nsp3667A667AgcGgcA26AY.9.20.000073
ORF1ab/nsp3667A667VgCggTg66B.10.000055
ORF1ab/nsp3667A667AgcGgcT56B.1.1.370.000964
ORF1ab/nsp3667A667AgcGgcA16B.1.1.370.000193
ORF1ab/nsp3667A667SGcgTcg66B.1.1.70.000005
ORF1ab/nsp3667A667AgcGgcT66B.1.6210.000531
ORF1ab/nsp3667A667AgcGgcT55AE.80.002445
ORF1ab/nsp3667A667AgcGgcT55AY.3.10.000426
ORF1ab/nsp3667A667AgcGgcT45AY.39.10.000158
ORF1ab/nsp3667A667AgcGgcA15AY.39.10.00004
ORF1ab/nsp3667A667TGcgAcg55AY.40.000008
ORF1ab/nsp3667A667VgCggTg45AY.440.000024
ORF1ab/nsp3667A667VgCGgTA15AY.440.000006
ORF1ab/nsp3667A667AgcGgcT45B0.000511
ORF1ab/nsp3667A667AgcGgcC15B0.000128
ORF1ab/nsp3667A667EgCggAg55B.1.10.000091
ORF1ab/nsp3667A667AgcGgcT55B.1.1.4160.004525
ORF1ab/nsp3667A667AgcGgcA55B.1.221.20.02008
ORF1ab/nsp3667A667AgcGgcA35B.1.3110.000824
ORF1ab/nsp3667A667AgcGgcT25B.1.3110.000549
ORF1ab/nsp3667A667AgcGgcA55B.1.3240.008026
ORF1ab/nsp3667A667SGcgTcg44AY.1210.000541
ORF1ab/nsp3667A667AgcGgcT44AY.4.20.000087
ORF1ab/nsp3667A667AgcGgcT34AY.460.000312
ORF1ab/nsp3667A667AgcGgcA14AY.460.000104
ORF1ab/nsp3667A667AgcGgcT44AY.46.20.002541
ORF1ab/nsp3667A667AgcGgcT44AY.540.000381
ORF1ab/nsp3667A667AgcGgcT34AY.680.000821
ORF1ab/nsp3667A667AgcGgcA14AY.680.000274
ORF1ab/nsp3667A667AgcGgcA44AY.840.00175
ORF1ab/nsp3667A667AgcGgcT44AY.980.000316
ORF1ab/nsp3667A667AgcGgcC24B.1.1.3260.003521
ORF1ab/nsp3667A667AgcGgcT24B.1.1.3260.003521
ORF1ab/nsp3667A667AgcGgcT44B.1.1.4200.004024
ORF1ab/nsp3667A667AgcGgcT34B.1.1.500.002037
ORF1ab/nsp3667A667AgcGgcA14B.1.1.500.000679
ORF1ab/nsp3667A667AgcGgcA44B.1.1.630.001543
ORF1ab/nsp3667A667VgCggTg44B.1.1770.000053
ORF1ab/nsp3667A667AgcGgcT44B.1.177.820.001909
ORF1ab/nsp3667A667AgcGgcT44B.1.1950.020101
ORF1ab/nsp3667A667AgcGgcT44B.1.2400.000862
ORF1ab/nsp3667A667TGcgAcg44B.1.5250.000453
ORF1ab/nsp3667A667AgcGgcT44B.1.5740.008602
ORF1ab/nsp3667A667AgcGgcT44B.1.6280.001409
ORF1ab/nsp3667A667AgcGgcT44P.20.000747
ORF1ab/nsp3667A667AgcGgcA33A.2.50.001497
ORF1ab/nsp3667A667GgCggGg23All0
ORF1ab/nsp3667A667GgCGgGT13All0
ORF1ab/nsp3667A667AgcGgcA33AY.1050.001929
ORF1ab/nsp3667A667AgcGgcA33AY.1200.000112
ORF1ab/nsp3667A667VgCggTg33AY.250.000018
ORF1ab/nsp3667A667VgCggTg33AY.30.00003
ORF1ab/nsp3667A667AgcGgcT33AY.450.000365
ORF1ab/nsp3667A667TGcgAcg33AY.46.40.000494
ORF1ab/nsp3667A667SGcgTcg33AY.50.000062
ORF1ab/nsp3667A667AgcGgcA23AY.550.001835
ORF1ab/nsp3667A667AgcGgcT13AY.550.000917
ORF1ab/nsp3667A667AgcGgcT33AY.700.000626
ORF1ab/nsp3667A667SGcgTcg33B.10.000027
ORF1ab/nsp3667A667VgCggTg33B.1.1.1980.004405
ORF1ab/nsp3667A667AgcGgcT33B.1.1.1980.004405
ORF1ab/nsp3667A667AgcGgcT33B.1.1.5250.016393
ORF1ab/nsp3667A667AgcGgcT33B.1.1110.003525
ORF1ab/nsp3667A667AgcGgcT33B.1.264.10.142857
ORF1ab/nsp3667A667TGcgAcg33B.1.4110.011111
ORF1ab/nsp3667A667EgCggAg33B.1.4170.085714
ORF1ab/nsp3667A667AgcGgcT33B.1.5880.00273
ORF1ab/nsp3667A667TGcgAcg33B.1.617.10.000387
ORF1ab/nsp3667A667AgcGgcT33B.1.6270.006061
ORF1ab/nsp3667A667AgcGgcT33B.1.6370.000219
ORF1ab/nsp3667A667VgCggTg33P.1.100.000808
ORF1ab/nsp3667A667AgcGgcT23P.1.140.000096
ORF1ab/nsp3667A667AgcGgcA13P.1.140.000048
ORF1ab/nsp3667A667AgcGgcA220.111111
ORF1ab/nsp3667A667TGcGAcC220.111111
ORF1ab/nsp3667A667VgCGgTT220.111111
ORF1ab/nsp3667A667SGcgTcg220.111111
ORF1ab/nsp3667A667del1gcGgc-12All0
ORF1ab/nsp3667A667del1Gcg-cg12All0
ORF1ab/nsp3667A667AgcGgcT22AY.100.00106
ORF1ab/nsp3667A667VgCggTg22AY.1000.000092
ORF1ab/nsp3667A667VgCggTg22AY.1090.001479
ORF1ab/nsp3667A667SGcgTcg22AY.1130.000285
ORF1ab/nsp3667A667AgcGgcT22AY.1170.000169
ORF1ab/nsp3667A667AgcGgcT22AY.120.10.000642
ORF1ab/nsp3667A667AgcGgcT22AY.120.2.10.000997
ORF1ab/nsp3667A667AgcGgcT22AY.130.000322
ORF1ab/nsp3667A667AgcGgcT22AY.140.000176
ORF1ab/nsp3667A667TGcgAcg22AY.250.000012
ORF1ab/nsp3667A667AgcGgcT22AY.270.000129
ORF1ab/nsp3667A667AgcGgcA12AY.34.10.00051
ORF1ab/nsp3667A667AgcGgcT12AY.34.10.00051
ORF1ab/nsp3667A667AgcGgcT12AY.360.000148
ORF1ab/nsp3667A667AgcGgcA12AY.360.000148
ORF1ab/nsp3667A667AgcGgcT22AY.4.10.001475
ORF1ab/nsp3667A667TGcgAcg22AY.4.50.000215
ORF1ab/nsp3667A667delGCG---22AY.4.50.000215
ORF1ab/nsp3667A667VgCggTg22AY.420.00008
ORF1ab/nsp3667A667delGCG---22AY.430.000009
ORF1ab/nsp3667A667EgCggAg22AY.430.000009
ORF1ab/nsp3667A667delGCG---22AY.440.000012
ORF1ab/nsp3667A667VgCggTg22AY.50.000041
ORF1ab/nsp3667A667AgcGgcT12AY.5.30.000337
ORF1ab/nsp3667A667AgcGgcA12AY.5.30.000337
ORF1ab/nsp3667A667VgCggTg22AY.60.000082
ORF1ab/nsp3667A667AgcGgcT12AY.650.000533
ORF1ab/nsp3667A667AgcGgcA12AY.650.000533
ORF1ab/nsp3667A667AgcGgcT22AY.690.000373
ORF1ab/nsp3667A667AgcGgcT22AY.770.002255
ORF1ab/nsp3667A667AgcGgcA22AY.790.002421
ORF1ab/nsp3667A667AgcGgcT12AY.850.000427
ORF1ab/nsp3667A667AgcGgcA12AY.850.000427
ORF1ab/nsp3667A667AgcGgcT22AY.940.000885
ORF1ab/nsp3667A667VgCggTg22AY.99.20.000184
ORF1ab/nsp3667A667delGCG---22B.10.000018
ORF1ab/nsp3667A667VgCggTg22B.1.10.000036
ORF1ab/nsp3667A667VgCggTg22B.1.1.2200.003717
ORF1ab/nsp3667A667AgcGgcT22B.1.1.2220.000408
ORF1ab/nsp3667A667AgcGgcT22B.1.1.250.001137
ORF1ab/nsp3667A667AgcGgcT12B.1.1.2770.000759
ORF1ab/nsp3667A667AgcGgcA12B.1.1.2770.000759
ORF1ab/nsp3667A667AgcGgcT12B.1.1.3060.000438
ORF1ab/nsp3667A667AgcGgcC12B.1.1.3060.000438
ORF1ab/nsp3667A667TGcgAcg22B.1.1.4340.000697
ORF1ab/nsp3667A667AgcGgcA22B.1.160.280.005848
ORF1ab/nsp3667A667AgcGgcT22B.1.160.290.008439
ORF1ab/nsp3667A667AgcGgcT22B.1.177.810.000379
ORF1ab/nsp3667A667AgcGgcT22B.1.2210.000142
ORF1ab/nsp3667A667AgcGgcT22B.1.258.170.000208
ORF1ab/nsp3667A667AgcGgcT22B.1.258.30.00335
ORF1ab/nsp3667A667AgcGgcT22B.1.36.290.001035
ORF1ab/nsp3667A667AgcGgcT22B.1.4970.00063
ORF1ab/nsp3667A667AgcGgcT22B.1.5580.009132
ORF1ab/nsp3667A667AgcGgcA22B.1.5610.000794
ORF1ab/nsp3667A667AgcGgcT22B.1.5700.005882
ORF1ab/nsp3667A667VgCggTg22B.1.5960.000174
ORF1ab/nsp3667A667delGCG---22B.1.617.10.000258
ORF1ab/nsp3667A667TGcgAcg22B.1.617.20.000008
ORF1ab/nsp3667A667delGCG---22B.1.6190.001742
ORF1ab/nsp3667A667AgcGgcT22B.550.0059
ORF1ab/nsp3667A667TGcgAcg22C.36.30.001134
ORF1ab/nsp3667A667AgcGgcT22D.20.00015
ORF1ab/nsp3667A667EgCggAg22L.30.007092
ORF1ab/nsp3667A667delGCG---22P.10.000032
ORF1ab/nsp3667A667TGcgAcg22P.10.000032
ORF1ab/nsp3667A667VgCggTg22P.10.000032
ORF1ab/nsp3667A667VgCggTg22P.1.150.000465
ORF1ab/nsp3667A667AgcGgcC22P.1.170.000324
ORF1ab/nsp3667A667TGcgAcg22P.1.70.000639
ORF1ab/nsp3667A667SGcgTcg11A.10.000282
ORF1ab/nsp3667A667delGCG---11A.2.20.001689
ORF1ab/nsp3667A667AgcGgcT11A.290.005319
ORF1ab/nsp3667A667AgcGgcT11AD.20.000219
ORF1ab/nsp3667A667del2GCg--g11All0
ORF1ab/nsp3667A667PGcgCcg11All0
ORF1ab/nsp3667A667DgCGgAT11All0
ORF1ab/nsp3667A667IGCGATA11All0
ORF1ab/nsp3667A667TGcgAcg11AY.1030.000006
ORF1ab/nsp3667A667SGcgTcg11AY.1030.000006
ORF1ab/nsp3667A667VgCggTg11AY.1050.000643
ORF1ab/nsp3667A667AgcGgcT11AY.1080.001103
ORF1ab/nsp3667A667AgcGgcT11AY.110.001339
ORF1ab/nsp3667A667VgCggTg11AY.1130.000142
ORF1ab/nsp3667A667EgCggAg11AY.1130.000142
ORF1ab/nsp3667A667AgcGgcT11AY.1130.000142
ORF1ab/nsp3667A667delGCG---11AY.1130.000142
ORF1ab/nsp3667A667AgcGgcT11AY.1160.000287
ORF1ab/nsp3667A667VgCggTg11AY.1170.000085
ORF1ab/nsp3667A667del2GCg--g11AY.1190.000035
ORF1ab/nsp3667A667VgCggTg11AY.1190.000035
ORF1ab/nsp3667A667delGCG---11AY.1200.000037
ORF1ab/nsp3667A667EgCggAg11AY.120.10.000321
ORF1ab/nsp3667A667AgcGgcT11AY.1210.000135
ORF1ab/nsp3667A667VgCggTg11AY.140.000088
ORF1ab/nsp3667A667AgcGgcT11AY.160.00038
ORF1ab/nsp3667A667VgCggTg11AY.200.000039
ORF1ab/nsp3667A667AgcGgcT11AY.210.001898
ORF1ab/nsp3667A667delGCG---11AY.250.000006
ORF1ab/nsp3667A667EgCggAg11AY.260.000028
ORF1ab/nsp3667A667SGcgTcg11AY.260.000028
ORF1ab/nsp3667A667VgCggTg11AY.290.000016
ORF1ab/nsp3667A667delGCG---11AY.30.00001
ORF1ab/nsp3667A667TGcgAcg11AY.30.00001
ORF1ab/nsp3667A667AgcGgcT11AY.320.000532
ORF1ab/nsp3667A667EgCggAg11AY.350.000233
ORF1ab/nsp3667A667AgcGgcT11AY.380.000499
ORF1ab/nsp3667A667VgCggTg11AY.390.000025
ORF1ab/nsp3667A667del1gcGgc-11AY.39.10.00004
ORF1ab/nsp3667A667GgCggGg11AY.39.10.00004
ORF1ab/nsp3667A667delGCG---11AY.40.000002
ORF1ab/nsp3667A667SGcgTcg11AY.40.000002
ORF1ab/nsp3667A667SGcgTcg11AY.4.10.000737
ORF1ab/nsp3667A667AgcGgcA11AY.4.30.000842
ORF1ab/nsp3667A667AgcGgcT11AY.4.40.000409
ORF1ab/nsp3667A667AgcGgcT11AY.400.000964
ORF1ab/nsp3667A667GgCGgGT11AY.440.000006
ORF1ab/nsp3667A667TGcgAcg11AY.440.000006
ORF1ab/nsp3667A667TGcgAcg11AY.450.000122
ORF1ab/nsp3667A667VgCggTg11AY.450.000122
ORF1ab/nsp3667A667TGcgAcg11AY.460.000104
ORF1ab/nsp3667A667delGCG---11AY.460.000104
ORF1ab/nsp3667A667VgCggTg11AY.46.40.000165
ORF1ab/nsp3667A667VgCggTg11AY.46.50.000198
ORF1ab/nsp3667A667VgCggTg11AY.470.000031
ORF1ab/nsp3667A667VgCggTg11AY.5.40.000277
ORF1ab/nsp3667A667AgcGgcA11AY.510.000909
ORF1ab/nsp3667A667AgcGgcA11AY.530.000288
ORF1ab/nsp3667A667VgCggTg11AY.550.000917
ORF1ab/nsp3667A667AgcGgcT11AY.580.000907
ORF1ab/nsp3667A667VgCggTg11AY.610.000105
ORF1ab/nsp3667A667EgCggAg11AY.620.000436
ORF1ab/nsp3667A667delGCG---11AY.720.001361
ORF1ab/nsp3667A667AgcGgcT11AY.730.000665
ORF1ab/nsp3667A667AgcGgcT11AY.740.000116
ORF1ab/nsp3667A667AgcGgcT11AY.750.000056
ORF1ab/nsp3667A667EgCggAg11AY.75.10.00018
ORF1ab/nsp3667A667delGCG---11AY.790.001211
ORF1ab/nsp3667A667AgcGgcT11AY.810.001992
ORF1ab/nsp3667A667delGCG---11AY.840.000437
ORF1ab/nsp3667A667VgCggTg11AY.870.000833
ORF1ab/nsp3667A667AgcGgcT11AY.9.10.000084
ORF1ab/nsp3667A667VgCggTg11AY.910.00073
ORF1ab/nsp3667A667AgcGgcT11AY.920.000287
ORF1ab/nsp3667A667delGCG---11AY.990.001049
ORF1ab/nsp3667A667VgCggTg11AZ.10.000867
ORF1ab/nsp3667A667AgcGgcT11AZ.20.000821
ORF1ab/nsp3667A667delGCG---11B0.000128
ORF1ab/nsp3667A667IGCGATA11B.1.10.000018
ORF1ab/nsp3667A667delGCG---11B.1.10.000018
ORF1ab/nsp3667A667AgcGgcT11B.1.1.10.000327
ORF1ab/nsp3667A667delGCG---11B.1.1.1420.017544
ORF1ab/nsp3667A667VgCggTg11B.1.1.2140.000055
ORF1ab/nsp3667A667AgcGgcT11B.1.1.2160.00089
ORF1ab/nsp3667A667TGcgAcg11B.1.1.2220.000204
ORF1ab/nsp3667A667AgcGgcA11B.1.1.2530.002506
ORF1ab/nsp3667A667AgcGgcT11B.1.1.2940.001266
ORF1ab/nsp3667A667delGCG---11B.1.1.3110.000358
ORF1ab/nsp3667A667delGCG---11B.1.1.3120.001912
ORF1ab/nsp3667A667AgcGgcT11B.1.1.330.000421
ORF1ab/nsp3667A667AgcGgcA11B.1.1.3330.001076
ORF1ab/nsp3667A667AgcGgcT11B.1.1.3690.000446
ORF1ab/nsp3667A667EgCggAg11B.1.1.3710.010417
ORF1ab/nsp3667A667VgCggTg11B.1.1.3760.005952
ORF1ab/nsp3667A667AgcGgcT11B.1.1.3890.006061
ORF1ab/nsp3667A667delGCG---11B.1.1.4090.002833
ORF1ab/nsp3667A667AgcGgcT11B.1.1.4090.002833
ORF1ab/nsp3667A667AgcGgcT11B.1.1.4170.002703
ORF1ab/nsp3667A667AgcGgcC11B.1.1.4650.015625
ORF1ab/nsp3667A667VgCggTg11B.1.1.5190.00004
ORF1ab/nsp3667A667DgCGgAT11B.1.1.70.000001
ORF1ab/nsp3667A667VgCggTg11B.1.1040.00369
ORF1ab/nsp3667A667AgcGgcT11B.1.110.30.000718
ORF1ab/nsp3667A667TGcgAcg11B.1.110.30.000718
ORF1ab/nsp3667A667VgCggTg11B.1.1110.001175
ORF1ab/nsp3667A667AgcGgcT11B.1.1260.001276
ORF1ab/nsp3667A667PGcgCcg11B.1.1280.000635
ORF1ab/nsp3667A667delGCG---11B.1.1490.003425
ORF1ab/nsp3667A667delGCG---11B.1.1570.002985
ORF1ab/nsp3667A667VgCggTg11B.1.1600.000031
ORF1ab/nsp3667A667delGCG---11B.1.160.70.002079
ORF1ab/nsp3667A667delGCG---11B.1.1770.000013
ORF1ab/nsp3667A667delGCG---11B.1.177.150.000631
ORF1ab/nsp3667A667delGCG---11B.1.177.160.000664
ORF1ab/nsp3667A667AgcGgcA11B.1.177.190.001431
ORF1ab/nsp3667A667AgcGgcA11B.1.177.210.000076
ORF1ab/nsp3667A667AgcGgcT11B.1.177.320.00135
ORF1ab/nsp3667A667AgcGgcT11B.1.177.40.000211
ORF1ab/nsp3667A667AgcGgcT11B.1.177.430.001477
ORF1ab/nsp3667A667SGcgTcg11B.1.177.440.000519
ORF1ab/nsp3667A667SGcgTcg11B.1.177.460.000918
ORF1ab/nsp3667A667AgcGgcT11B.1.177.50.001242
ORF1ab/nsp3667A667delGCG---11B.1.177.500.004695
ORF1ab/nsp3667A667del1Gcg-cg11B.1.177.540.000606
ORF1ab/nsp3667A667delGCG---11B.1.177.630.002703
ORF1ab/nsp3667A667delGCG---11B.1.177.690.001484
ORF1ab/nsp3667A667AgcGgcT11B.1.177.770.000726
ORF1ab/nsp3667A667delGCG---11B.1.177.810.000189
ORF1ab/nsp3667A667VgCggTg11B.1.177.860.000183
ORF1ab/nsp3667A667EgCggAg11B.1.20.000009
ORF1ab/nsp3667A667AgcGgcT11B.1.2060.000816
ORF1ab/nsp3667A667delGCG---11B.1.2100.002132
ORF1ab/nsp3667A667AgcGgcT11B.1.2140.003663
ORF1ab/nsp3667A667AgcGgcT11B.1.214.10.02
ORF1ab/nsp3667A667AgcGgcT11B.1.214.20.0006
ORF1ab/nsp3667A667AgcGgcT11B.1.220.001318
ORF1ab/nsp3667A667SGcgTcg11B.1.230.006061
ORF1ab/nsp3667A667AgcGgcA11B.1.2410.000812
ORF1ab/nsp3667A667VgCggTg11B.1.2430.00007
ORF1ab/nsp3667A667delGCG---11B.1.2430.00007
ORF1ab/nsp3667A667delGCG---11B.1.2580.000067
ORF1ab/nsp3667A667AgcGgcA11B.1.258.210.007752
ORF1ab/nsp3667A667AgcGgcT11B.1.2640.012346
ORF1ab/nsp3667A667VgCggTg11B.1.2650.001271
ORF1ab/nsp3667A667delGCG---11B.1.3190.003049
ORF1ab/nsp3667A667AgcGgcT11B.1.3190.003049
ORF1ab/nsp3667A667VgCggTg11B.1.3510.00003
ORF1ab/nsp3667A667delGCG---11B.1.360.000146
ORF1ab/nsp3667A667AgcGgcC11B.1.36.10.00114
ORF1ab/nsp3667A667SGcgTcg11B.1.36.100.004785
ORF1ab/nsp3667A667AgcGgcT11B.1.36.160.001425
ORF1ab/nsp3667A667AgcGgcA11B.1.36.170.000494
ORF1ab/nsp3667A667AgcGgcT11B.1.36.180.00042
ORF1ab/nsp3667A667VgCggTg11B.1.3660.004878
ORF1ab/nsp3667A667VgCggTg11B.1.3690.000285
ORF1ab/nsp3667A667AgcGgcT11B.1.3690.000285
ORF1ab/nsp3667A667VgCggTg11B.1.4090.000781
ORF1ab/nsp3667A667TGcgAcg11B.1.4160.001269
ORF1ab/nsp3667A667AgcGgcA11B.1.4260.001009
ORF1ab/nsp3667A667VgCggTg11B.1.4270.00005
ORF1ab/nsp3667A667AgcGgcA11B.1.428.20.033333
ORF1ab/nsp3667A667TGcgAcg11B.1.4290.000024
ORF1ab/nsp3667A667AgcGgcT11B.1.466.10.007194
ORF1ab/nsp3667A667AgcGgcA11B.1.466.20.000391
ORF1ab/nsp3667A667SGcgTcg11B.1.4680.005714
ORF1ab/nsp3667A667AgcGgcT11B.1.4680.005714
ORF1ab/nsp3667A667AgcGgcT11B.1.4710.002732
ORF1ab/nsp3667A667GgCggGg11B.1.5030.002488
ORF1ab/nsp3667A667AgcGgcT11B.1.5170.000427
ORF1ab/nsp3667A667AgcGgcA11B.1.5180.011765
ORF1ab/nsp3667A667VgCggTg11B.1.5260.000024
ORF1ab/nsp3667A667VgCggTg11B.1.5610.000397
ORF1ab/nsp3667A667AgcGgcT11B.1.5640.000426
ORF1ab/nsp3667A667AgcGgcT11B.1.5680.001111
ORF1ab/nsp3667A667AgcGgcA11B.1.5750.000303
ORF1ab/nsp3667A667AgcGgcA11B.1.5850.027778
ORF1ab/nsp3667A667AgcGgcT11B.1.5950.000261
ORF1ab/nsp3667A667EgCggAg11B.1.5950.000261
ORF1ab/nsp3667A667VgCggTg11B.1.5950.000261
ORF1ab/nsp3667A667TGcgAcg11B.1.5950.000261
ORF1ab/nsp3667A667AgcGgcT11B.1.5960.000087
ORF1ab/nsp3667A667VgCggTg11B.1.5990.00365
ORF1ab/nsp3667A667EgCggAg11B.1.617.20.000004
ORF1ab/nsp3667A667delGCG---11B.1.617.20.000004
ORF1ab/nsp3667A667delGCG---11B.1.6210.000089
ORF1ab/nsp3667A667VgCggTg11B.1.6210.000089
ORF1ab/nsp3667A667TGcgAcg11B.1.6220.012987
ORF1ab/nsp3667A667AgcGgcA11B.1.6230.000536
ORF1ab/nsp3667A667delGCG---11B.150.017544
ORF1ab/nsp3667A667AgcGgcT11C.10.002392
ORF1ab/nsp3667A667AgcGgcT11C.390.018868
ORF1ab/nsp3667A667TGcgAcg11D.20.000075
ORF1ab/nsp3667A667EgCggAg11P.10.000016
ORF1ab/nsp3667A667delGCG---11P.1.10.000318
ORF1ab/nsp3667A667AgcGgcT11P.1.10.000318
ORF1ab/nsp3667A667AgcGgcA11P.1.150.000232
ORF1ab/nsp3667A667AgcGgcT11P.1.160.000374
ORF1ab/nsp3667A667VgCggTg11P.1.170.000162
ORF1ab/nsp3667A667AgcGgcT11P.1.40.000977
ORF1ab/nsp3667A667AgcGgcT11P.1.70.000319
ORF1ab/nsp3667A667VgCggTg11P.20.000187
ORF1ab/nsp3667A667TGcgAcg11P.30.001595
ORF1ab/nsp3667A667AgcGgcT11Q.10.000126
ORF1ab/nsp3667A667AgcGgcA11Q.80.000165
ORF1ab/nsp3667A667TGcgAcg11Q.80.000165
ORF1ab/nsp3667A667VgCggTg11Q.80.000165
ORF1ab/nsp3667A667delGCG---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.