CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 646

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3646R646WR1464WnonsynCggTgg2853285314655-4657
ORF1ab/nsp3646R646RR1464RsyncgGcgA200614770.7362914655-4657
ORF1ab/nsp3646R646RR1464RsyncgGcgT20063560.1774684655-4657
ORF1ab/nsp3646R646RR1464RsynCggAgg20061700.08474584655-4657
ORF1ab/nsp3646R646RR1464RsyncgGcgC200630.001495514655-4657
ORF1ab/nsp3646R646QR1464QnonsyncGgcAg141314120.9992924655-4657
ORF1ab/nsp3646R646QR1464QnonsyncGGcAA141310.0007077144655-4657
ORF1ab/nsp3646R646LR1464LnonsyncGgcTg1211150.9504134655-4657
ORF1ab/nsp3646R646LR1464LnonsynCGgTTg12120.01652894655-4657
ORF1ab/nsp3646R646LR1464LnonsyncGGcTT12120.01652894655-4657
ORF1ab/nsp3646R646LR1464LnonsynCGGTTA12110.008264464655-4657
ORF1ab/nsp3646R646LR1464LnonsyncGGcTA12110.008264464655-4657
ORF1ab/nsp3646R646delR1464deldelCGG---575714655-4657
ORF1ab/nsp3646R646GR1464GnonsynCggGgg242414655-4657
ORF1ab/nsp3646R646del1R1464del1delcgGcg-1070.74655-4657
ORF1ab/nsp3646R646del1R1464del1delCgg-gg1030.34655-4657
ORF1ab/nsp3646R646HR1464HnonsyncGGcAT760.8571434655-4657
ORF1ab/nsp3646R646HR1464HnonsyncGGcAC710.1428574655-4657
ORF1ab/nsp3646R646XR1464XnonsynCGgTAg630.54655-4657
ORF1ab/nsp3646R646XR1464XnonsynCgGTgA620.3333334655-4657
ORF1ab/nsp3646R646XR1464XnonsynCGGTAA610.1666674655-4657
ORF1ab/nsp3646R646PR1464PnonsyncGgcCg5514655-4657
ORF1ab/nsp3646R646CR1464CnonsynCgGTgT430.754655-4657
ORF1ab/nsp3646R646CR1464CnonsynCgGTgC410.254655-4657
ORF1ab/nsp3646R646FR1464FnonsynCGGTTT2214655-4657
ORF1ab/nsp3646R646YR1464YnonsynCGGTAC210.54655-4657
ORF1ab/nsp3646R646YR1464YnonsynCGGTAT210.54655-4657
ORF1ab/nsp3646R646SR1464SnonsynCGgTCg1114655-4657
ORF1ab/nsp3646R646KR1464KnonsynCGgAAg1114655-4657
ORF1ab/nsp3646R646ER1464EnonsynCGgGAg1114655-4657
ORF1ab/nsp3646R646MR1464MnonsynCGgATg1114655-4657
ORF1ab/nsp3646R646IR1464InonsynCGGATT1114655-4657

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3646R646WCggTgg28532853All0.000546
ORF1ab/nsp3646R646RcgGcgA14772006All0.000282
ORF1ab/nsp3646R646RcgGcgT3562006All0.000068
ORF1ab/nsp3646R646RCggAgg1702006All0.000033
ORF1ab/nsp3646R646RcgGcgC32006All0.000001
ORF1ab/nsp3646R646QcGgcAg14121413All0.00027
ORF1ab/nsp3646R646QcGGcAA11413All0
ORF1ab/nsp3646R646RcgGcgA11471147AY.460.11938
ORF1ab/nsp3646R646WCggTgg878878B.1.1.70.000786
ORF1ab/nsp3646R646QcGgcAg623623B.1.1.70.000558
ORF1ab/nsp3646R646WCggTgg264264B.1.1.440.636145
ORF1ab/nsp3646R646WCggTgg244244AY.40.00038
ORF1ab/nsp3646R646RcgGcgT220220B.1.1490.753425
ORF1ab/nsp3646R646QcGgcAg183183AY.40.000285
ORF1ab/nsp3646R646RcgGcgA180180B.1.3200.224159
ORF1ab/nsp3646R646QcGgcAg164164B.1.617.20.000618
ORF1ab/nsp3646R646LcGgcTg115121All0.000022
ORF1ab/nsp3646R646LcGGcTT2121All0
ORF1ab/nsp3646R646LCGgTTg2121All0
ORF1ab/nsp3646R646LcGGcTA1121All0
ORF1ab/nsp3646R646LCGGTTA1121All0
ORF1ab/nsp3646R646WCggTgg115115AY.430.00051
ORF1ab/nsp3646R646RCggAgg6387AY.40.000098
ORF1ab/nsp3646R646RcgGcgA1287AY.40.000019
ORF1ab/nsp3646R646RcgGcgT1287AY.40.000019
ORF1ab/nsp3646R646WCggTgg7777AY.1030.000478
ORF1ab/nsp3646R646WCggTgg6868B.1.3610.087629
ORF1ab/nsp3646R646RcgGcgA2764B.1.1.70.000024
ORF1ab/nsp3646R646RCggAgg1964B.1.1.70.000017
ORF1ab/nsp3646R646RcgGcgT1864B.1.1.70.000016
ORF1ab/nsp3646R646delCGG---5757All0.000011
ORF1ab/nsp3646R646WCggTgg5555B.1.10.000998
ORF1ab/nsp3646R646WCggTgg5252AY.440.000317
ORF1ab/nsp3646R646WCggTgg5151AY.250.000307
ORF1ab/nsp3646R646QcGgcAg5050AY.30.000497
ORF1ab/nsp3646R646WCggTgg4949AY.390.001211
ORF1ab/nsp3646R646WCggTgg4747B.1.1770.000619
ORF1ab/nsp3646R646RCggAgg4344B.1.20.000379
ORF1ab/nsp3646R646RcgGcgT144B.1.20.000009
ORF1ab/nsp3646R646WCggTgg4242B.1.20.00037
ORF1ab/nsp3646R646WCggTgg3939B.1.1.2140.002163
ORF1ab/nsp3646R646QcGgcAg3838B.1.20.000335
ORF1ab/nsp3646R646WCggTgg3737B.1.617.20.000139
ORF1ab/nsp3646R646WCggTgg3636AY.30.000358
ORF1ab/nsp3646R646RcgGcgA3336B.1.1770.000435
ORF1ab/nsp3646R646RcgGcgT336B.1.1770.00004
ORF1ab/nsp3646R646WCggTgg3333B.1.4290.000776
ORF1ab/nsp3646R646LcGgcTg3232AY.430.000142
ORF1ab/nsp3646R646QcGgcAg3232AY.430.000142
ORF1ab/nsp3646R646WCggTgg3232B.30.026578
ORF1ab/nsp3646R646QcGgcAg3131AY.250.000186
ORF1ab/nsp3646R646WCggTgg3131B.1.4270.001565
ORF1ab/nsp3646R646RcgGcgA1731B.1.617.20.000064
ORF1ab/nsp3646R646RcgGcgT731B.1.617.20.000026
ORF1ab/nsp3646R646RCggAgg631B.1.617.20.000023
ORF1ab/nsp3646R646RcgGcgC131B.1.617.20.000004
ORF1ab/nsp3646R646WCggTgg3131P.10.000488
ORF1ab/nsp3646R646QcGgcAg2929AY.1130.004129
ORF1ab/nsp3646R646WCggTgg2727AY.420.001086
ORF1ab/nsp3646R646WCggTgg2727AY.710.012827
ORF1ab/nsp3646R646GCggGgg2424All0.000005
ORF1ab/nsp3646R646QcGgcAg2424AY.90.001622
ORF1ab/nsp3646R646WCggTgg2323B.10.000211
ORF1ab/nsp3646R646WCggTgg2121AY.99.20.001935
ORF1ab/nsp3646R646QcGgcAg1919B.10.000174
ORF1ab/nsp3646R646RcgGcgA918AY.440.000055
ORF1ab/nsp3646R646RcgGcgT718AY.440.000043
ORF1ab/nsp3646R646RCggAgg218AY.440.000012
ORF1ab/nsp3646R646delCGG---1818B.1.1.70.000016
ORF1ab/nsp3646R646WCggTgg1818B.1.2430.001253
ORF1ab/nsp3646R646WCggTgg1616AY.290.000252
ORF1ab/nsp3646R646WCggTgg1616AY.4.40.006547
ORF1ab/nsp3646R646WCggTgg1515AY.1160.004302
ORF1ab/nsp3646R646WCggTgg1515AY.460.001561
ORF1ab/nsp3646R646LcGgcTg1414AY.40.000022
ORF1ab/nsp3646R646WCggTgg1414AY.540.001335
ORF1ab/nsp3646R646QcGgcAg1414AY.760.067633
ORF1ab/nsp3646R646RcgGcgT1414B.1.2050.333333
ORF1ab/nsp3646R646QcGgcAg1313AY.1030.000081
ORF1ab/nsp3646R646WCggTgg1313AY.46.60.000939
ORF1ab/nsp3646R646WCggTgg1212AY.1020.000318
ORF1ab/nsp3646R646GCggGgg1212AY.440.000073
ORF1ab/nsp3646R646RcgGcgT612B.10.000055
ORF1ab/nsp3646R646RcgGcgA312B.10.000027
ORF1ab/nsp3646R646RCggAgg312B.10.000027
ORF1ab/nsp3646R646RcgGcgA1212B.1.4270.000606
ORF1ab/nsp3646R646QcGgcAg1212B.1.4290.000282
ORF1ab/nsp3646R646RCggAgg1111AY.116.10.003426
ORF1ab/nsp3646R646WCggTgg1111AY.1180.000689
ORF1ab/nsp3646R646WCggTgg1111AY.870.009159
ORF1ab/nsp3646R646QcGgcAg1111B.1.1770.000145
ORF1ab/nsp3646R646WCggTgg1111B.1.177.600.002403
ORF1ab/nsp3646R646WCggTgg1111B.1.5960.000959
ORF1ab/nsp3646R646del1cgGcg-710All0.000001
ORF1ab/nsp3646R646del1Cgg-gg310All0.000001
ORF1ab/nsp3646R646RcgGcgT510AY.30.00005
ORF1ab/nsp3646R646RcgGcgA510AY.30.00005
ORF1ab/nsp3646R646WCggTgg1010AY.39.10.000396
ORF1ab/nsp3646R646QcGgcAg1010AY.440.000061
ORF1ab/nsp3646R646WCggTgg1010AY.7.20.005593
ORF1ab/nsp3646R646WCggTgg1010B.1.2650.012706
ORF1ab/nsp3646R646QcGgcAg99AY.1000.000414
ORF1ab/nsp3646R646WCggTgg99AY.1140.00208
ORF1ab/nsp3646R646QcGgcAg99AY.200.00035
ORF1ab/nsp3646R646RcgGcgT99AY.290.000142
ORF1ab/nsp3646R646WCggTgg99B.1.1.3340.147541
ORF1ab/nsp3646R646WCggTgg99B.1.3510.000268
ORF1ab/nsp3646R646WCggTgg99D.20.000675
ORF1ab/nsp3646R646QcGgcAg88AY.330.000534
ORF1ab/nsp3646R646WCggTgg88AY.340.000776
ORF1ab/nsp3646R646QcGgcAg88AY.390.000198
ORF1ab/nsp3646R646WCggTgg88AY.50.000165
ORF1ab/nsp3646R646WCggTgg88AY.5.40.002214
ORF1ab/nsp3646R646WCggTgg88AY.98.10.000387
ORF1ab/nsp3646R646QcGgcAg88B.1.10.000145
ORF1ab/nsp3646R646LcGgcTg88B.1.1.70.000007
ORF1ab/nsp3646R646LcGgcTg88B.1.1600.00025
ORF1ab/nsp3646R646WCggTgg88B.1.438.10.000858
ORF1ab/nsp3646R646WCggTgg88B.1.5260.000188
ORF1ab/nsp3646R646HcGGcAT67All0.000001
ORF1ab/nsp3646R646HcGGcAC17All0
ORF1ab/nsp3646R646QcGgcAg77AY.1020.000186
ORF1ab/nsp3646R646WCggTgg77AY.200.000272
ORF1ab/nsp3646R646RcgGcgT77AY.330.000467
ORF1ab/nsp3646R646WCggTgg77AY.4.20.000152
ORF1ab/nsp3646R646WCggTgg77B.1.177.810.001325
ORF1ab/nsp3646R646LcGgcTg77B.1.617.20.000026
ORF1ab/nsp3646R646XCGgTAg36All0.000001
ORF1ab/nsp3646R646XCgGTgA26All0
ORF1ab/nsp3646R646XCGGTAA16All0
ORF1ab/nsp3646R646RCggAgg56AY.1030.000031
ORF1ab/nsp3646R646RcgGcgT16AY.1030.000006
ORF1ab/nsp3646R646QcGgcAg66AY.420.000241
ORF1ab/nsp3646R646WCggTgg66AY.620.002614
ORF1ab/nsp3646R646WCggTgg66AY.750.000336
ORF1ab/nsp3646R646QcGgcAg66B.1.1.3180.001811
ORF1ab/nsp3646R646LcGgcTg66B.1.1770.000079
ORF1ab/nsp3646R646WCggTgg66B.1.177.350.004147
ORF1ab/nsp3646R646QcGgcAg66B.1.3510.000178
ORF1ab/nsp3646R646QcGgcAg66B.1.5260.000141
ORF1ab/nsp3646R646WCggTgg66C.36.30.003403
ORF1ab/nsp3646R646QcGgcAg66P.10.000095
ORF1ab/nsp3646R646XCGgTAg350.166667
ORF1ab/nsp3646R646XCgGTgA150.055556
ORF1ab/nsp3646R646XCGGTAA150.055556
ORF1ab/nsp3646R646PcGgcCg55All0.000001
ORF1ab/nsp3646R646GCggGgg55AY.40.000008
ORF1ab/nsp3646R646WCggTgg55AY.46.10.005133
ORF1ab/nsp3646R646QcGgcAg55AY.60.000206
ORF1ab/nsp3646R646WCggTgg55AY.610.000524
ORF1ab/nsp3646R646WCggTgg55AY.840.002187
ORF1ab/nsp3646R646RcgGcgA35B.1.10.000054
ORF1ab/nsp3646R646RcgGcgT25B.1.10.000036
ORF1ab/nsp3646R646WCggTgg55B.1.1.1610.017668
ORF1ab/nsp3646R646RCggAgg55B.1.1.2910.003712
ORF1ab/nsp3646R646del1cgGcg-45B.1.1.70.000004
ORF1ab/nsp3646R646del1Cgg-gg15B.1.1.70.000001
ORF1ab/nsp3646R646WCggTgg55B.1.177.570.001405
ORF1ab/nsp3646R646LCGGTTA15B.1.2210.000071
ORF1ab/nsp3646R646LCGgTTg15B.1.2210.000071
ORF1ab/nsp3646R646LcGGcTT15B.1.2210.000071
ORF1ab/nsp3646R646LcGGcTA15B.1.2210.000071
ORF1ab/nsp3646R646LcGgcTg15B.1.2210.000071
ORF1ab/nsp3646R646QcGgcAg55B.1.2580.000333
ORF1ab/nsp3646R646WCggTgg55B.1.4480.013123
ORF1ab/nsp3646R646QcGgcAg55B.1.617.10.000645
ORF1ab/nsp3646R646LcGgcTg55D.20.000375
ORF1ab/nsp3646R646WCggTgg55Q.80.000825
ORF1ab/nsp3646R646QcGgcAg340.166667
ORF1ab/nsp3646R646QcGGcAA140.055556
ORF1ab/nsp3646R646CCgGTgT34All0.000001
ORF1ab/nsp3646R646CCgGTgC14All0
ORF1ab/nsp3646R646RcgGcgA24AY.1020.000053
ORF1ab/nsp3646R646RcgGcgT24AY.1020.000053
ORF1ab/nsp3646R646WCggTgg44AY.260.000113
ORF1ab/nsp3646R646delCGG---44AY.40.000006
ORF1ab/nsp3646R646WCggTgg44AY.4.50.00043
ORF1ab/nsp3646R646WCggTgg44AY.470.000124
ORF1ab/nsp3646R646WCggTgg44AY.670.001857
ORF1ab/nsp3646R646WCggTgg44AY.75.10.000721
ORF1ab/nsp3646R646WCggTgg44B0.000511
ORF1ab/nsp3646R646RCggAgg34B.1.1.370.000579
ORF1ab/nsp3646R646RcgGcgT14B.1.1.370.000193
ORF1ab/nsp3646R646HcGGcAT44B.1.1490.013699
ORF1ab/nsp3646R646RcgGcgT44B.1.177.600.000874
ORF1ab/nsp3646R646WCggTgg44B.1.2340.000528
ORF1ab/nsp3646R646QcGgcAg44B.1.30.010471
ORF1ab/nsp3646R646WCggTgg44B.1.5250.000453
ORF1ab/nsp3646R646WCggTgg44B.1.6050.02381
ORF1ab/nsp3646R646QcGgcAg44C.370.000464
ORF1ab/nsp3646R646QcGgcAg44Q.80.00066
ORF1ab/nsp3646R646WCggTgg330.166667
ORF1ab/nsp3646R646RcgGcgA130.055556
ORF1ab/nsp3646R646LCGgTTg130.055556
ORF1ab/nsp3646R646RcgGcgC130.055556
ORF1ab/nsp3646R646RcgGcgT130.055556
ORF1ab/nsp3646R646LcGGcTT130.055556
ORF1ab/nsp3646R646LcGgcTg130.055556
ORF1ab/nsp3646R646RcgGcgT33AY.1000.000138
ORF1ab/nsp3646R646WCggTgg33AY.1110.000549
ORF1ab/nsp3646R646WCggTgg33AY.1190.000106
ORF1ab/nsp3646R646WCggTgg33AY.230.000209
ORF1ab/nsp3646R646WCggTgg33AY.3.10.000256
ORF1ab/nsp3646R646WCggTgg33AY.360.000445
ORF1ab/nsp3646R646RcgGcgT33AY.4.20.000065
ORF1ab/nsp3646R646RcgGcgA33AY.580.002722
ORF1ab/nsp3646R646WCggTgg33AY.9.10.000251
ORF1ab/nsp3646R646WCggTgg33AY.9.20.00011
ORF1ab/nsp3646R646WCggTgg33AY.910.002191
ORF1ab/nsp3646R646RcgGcgT33AY.98.10.000145
ORF1ab/nsp3646R646LcGgcTg33B.1.1.10.00098
ORF1ab/nsp3646R646WCggTgg33B.1.1.1760.001318
ORF1ab/nsp3646R646WCggTgg33B.1.1.4340.001046
ORF1ab/nsp3646R646QcGgcAg33B.1.1.5190.000119
ORF1ab/nsp3646R646WCggTgg33B.1.1600.000094
ORF1ab/nsp3646R646WCggTgg33B.1.2210.000213
ORF1ab/nsp3646R646RcgGcgT33B.1.2400.000647
ORF1ab/nsp3646R646QcGgcAg33B.1.2430.000209
ORF1ab/nsp3646R646WCggTgg33B.1.2580.0002
ORF1ab/nsp3646R646WCggTgg33B.1.3750.002459
ORF1ab/nsp3646R646WCggTgg33B.1.5030.007463
ORF1ab/nsp3646R646RcgGcgT23B.1.5260.000047
ORF1ab/nsp3646R646RcgGcgA13B.1.5260.000024
ORF1ab/nsp3646R646WCggTgg33B.1.619.10.001924
ORF1ab/nsp3646R646WCggTgg33B.1.6200.002838
ORF1ab/nsp3646R646WCggTgg33B.1.6210.000266
ORF1ab/nsp3646R646RcgGcgA23B.1.621.10.001012
ORF1ab/nsp3646R646RCggAgg13B.1.621.10.000506
ORF1ab/nsp3646R646WCggTgg33B.1.6230.001609
ORF1ab/nsp3646R646WCggTgg33B.1.6370.000219
ORF1ab/nsp3646R646WCggTgg33P.1.140.000143
ORF1ab/nsp3646R646HcGGcAT120.055556
ORF1ab/nsp3646R646YCGGTAC120.055556
ORF1ab/nsp3646R646YCGGTAT120.055556
ORF1ab/nsp3646R646CCgGTgT120.055556
ORF1ab/nsp3646R646HcGGcAC120.055556
ORF1ab/nsp3646R646CCgGTgC120.055556
ORF1ab/nsp3646R646LcGgcTg22AD.20.000438
ORF1ab/nsp3646R646FCGGTTT22All0
ORF1ab/nsp3646R646YCGGTAT12All0
ORF1ab/nsp3646R646YCGGTAC12All0
ORF1ab/nsp3646R646WCggTgg22AY.1000.000092
ORF1ab/nsp3646R646WCggTgg22AY.120.10.000642
ORF1ab/nsp3646R646RcgGcgT12AY.250.000006
ORF1ab/nsp3646R646RcgGcgA12AY.250.000006
ORF1ab/nsp3646R646QcGgcAg22AY.260.000057
ORF1ab/nsp3646R646QcGgcAg22AY.270.000129
ORF1ab/nsp3646R646GCggGgg22AY.30.00002
ORF1ab/nsp3646R646WCggTgg22AY.330.000134
ORF1ab/nsp3646R646LcGgcTg22AY.360.000296
ORF1ab/nsp3646R646WCggTgg22AY.380.000999
ORF1ab/nsp3646R646RCggAgg12AY.390.000025
ORF1ab/nsp3646R646RcgGcgA12AY.390.000025
ORF1ab/nsp3646R646delCGG---22AY.4.50.000215
ORF1ab/nsp3646R646LcGgcTg22AY.440.000012
ORF1ab/nsp3646R646RcgGcgA22AY.450.000243
ORF1ab/nsp3646R646QcGgcAg22AY.470.000062
ORF1ab/nsp3646R646WCggTgg22AY.680.000547
ORF1ab/nsp3646R646RcgGcgA22AY.70.000392
ORF1ab/nsp3646R646WCggTgg22AY.700.000417
ORF1ab/nsp3646R646LcGgcTg22AY.750.000112
ORF1ab/nsp3646R646QcGgcAg22AY.750.000112
ORF1ab/nsp3646R646RcgGcgA12AY.790.001211
ORF1ab/nsp3646R646RcgGcgT12AY.790.001211
ORF1ab/nsp3646R646WCggTgg22AY.980.000158
ORF1ab/nsp3646R646RCggAgg12B0.000128
ORF1ab/nsp3646R646RcgGcgA12B0.000128
ORF1ab/nsp3646R646delCGG---22B.10.000018
ORF1ab/nsp3646R646LcGgcTg22B.10.000018
ORF1ab/nsp3646R646WCggTgg22B.1.1.10.000653
ORF1ab/nsp3646R646WCggTgg22B.1.1.2880.003831
ORF1ab/nsp3646R646WCggTgg22B.1.1.2910.001485
ORF1ab/nsp3646R646WCggTgg22B.1.1.3060.000877
ORF1ab/nsp3646R646WCggTgg22B.1.1.3660.031746
ORF1ab/nsp3646R646RcgGcgT22B.1.1.5190.000079
ORF1ab/nsp3646R646WCggTgg22B.1.1460.008475
ORF1ab/nsp3646R646delCGG---22B.1.1770.000026
ORF1ab/nsp3646R646WCggTgg22B.1.177.40.000422
ORF1ab/nsp3646R646RcgGcgA12B.1.2210.000071
ORF1ab/nsp3646R646RcgGcgT12B.1.2210.000071
ORF1ab/nsp3646R646WCggTgg22B.1.258.170.000208
ORF1ab/nsp3646R646WCggTgg22B.1.36.180.00084
ORF1ab/nsp3646R646RcgGcgT22B.1.390.007812
ORF1ab/nsp3646R646QcGgcAg22B.1.4270.000101
ORF1ab/nsp3646R646LcGgcTg22B.1.4280.002041
ORF1ab/nsp3646R646WCggTgg22B.1.466.20.000782
ORF1ab/nsp3646R646WCggTgg22B.1.5640.000852
ORF1ab/nsp3646R646WCggTgg22C.160.002121
ORF1ab/nsp3646R646delCGG---22P.10.000032
ORF1ab/nsp3646R646QcGgcAg22P.1.150.000465
ORF1ab/nsp3646R646WCggTgg22Q.10.000253
ORF1ab/nsp3646R646QcGgcAg22Q.10.000253
ORF1ab/nsp3646R646delCGG---22U.30.007722
ORF1ab/nsp3646R646FCGGTTT110.055556
ORF1ab/nsp3646R646RcgGcgA11A0.000387
ORF1ab/nsp3646R646WCggTgg11A.2.20.001689
ORF1ab/nsp3646R646delCGG---11A.2.20.001689
ORF1ab/nsp3646R646LcGgcTg11A.2.40.003367
ORF1ab/nsp3646R646QcGgcAg11A.2.50.000499
ORF1ab/nsp3646R646KCGgAAg11All0
ORF1ab/nsp3646R646SCGgTCg11All0
ORF1ab/nsp3646R646ICGGATT11All0
ORF1ab/nsp3646R646MCGgATg11All0
ORF1ab/nsp3646R646ECGgGAg11All0
ORF1ab/nsp3646R646delCGG---11AY.1000.000046
ORF1ab/nsp3646R646WCggTgg11AY.1010.00049
ORF1ab/nsp3646R646LcGgcTg11AY.1020.000027
ORF1ab/nsp3646R646WCggTgg11AY.1060.000335
ORF1ab/nsp3646R646QcGgcAg11AY.1100.000113
ORF1ab/nsp3646R646RCggAgg11AY.1130.000142
ORF1ab/nsp3646R646WCggTgg11AY.1130.000142
ORF1ab/nsp3646R646WCggTgg11AY.1170.000085
ORF1ab/nsp3646R646QcGgcAg11AY.1170.000085
ORF1ab/nsp3646R646QcGgcAg11AY.1190.000035
ORF1ab/nsp3646R646LcGgcTg11AY.1190.000035
ORF1ab/nsp3646R646delCGG---11AY.1200.000037
ORF1ab/nsp3646R646HcGGcAT11AY.120.10.000321
ORF1ab/nsp3646R646RcgGcgT11AY.130.000161
ORF1ab/nsp3646R646RcgGcgA11AY.170.008197
ORF1ab/nsp3646R646QcGgcAg11AY.210.001898
ORF1ab/nsp3646R646del1cgGcg-11AY.250.000006
ORF1ab/nsp3646R646LcGgcTg11AY.250.000006
ORF1ab/nsp3646R646LcGgcTg11AY.260.000028
ORF1ab/nsp3646R646delCGG---11AY.30.00001
ORF1ab/nsp3646R646WCggTgg11AY.320.000532
ORF1ab/nsp3646R646RcgGcgA11AY.340.000097
ORF1ab/nsp3646R646WCggTgg11AY.34.10.00051
ORF1ab/nsp3646R646WCggTgg11AY.350.000233
ORF1ab/nsp3646R646RCggAgg11AY.360.000148
ORF1ab/nsp3646R646del1Cgg-gg11AY.360.000148
ORF1ab/nsp3646R646QcGgcAg11AY.360.000148
ORF1ab/nsp3646R646QcGgcAg11AY.39.10.00004
ORF1ab/nsp3646R646WCggTgg11AY.4.30.000842
ORF1ab/nsp3646R646WCggTgg11AY.410.000294
ORF1ab/nsp3646R646RCggAgg11AY.430.000004
ORF1ab/nsp3646R646GCggGgg11AY.430.000004
ORF1ab/nsp3646R646ECGgGAg11AY.430.000004
ORF1ab/nsp3646R646MCGgATg11AY.430.000004
ORF1ab/nsp3646R646CCgGTgT11AY.440.000006
ORF1ab/nsp3646R646PcGgcCg11AY.440.000006
ORF1ab/nsp3646R646delCGG---11AY.440.000006
ORF1ab/nsp3646R646QcGgcAg11AY.450.000122
ORF1ab/nsp3646R646WCggTgg11AY.46.30.000934
ORF1ab/nsp3646R646RcgGcgA11AY.46.60.000072
ORF1ab/nsp3646R646RcgGcgA11AY.470.000031
ORF1ab/nsp3646R646QcGgcAg11AY.50.000021
ORF1ab/nsp3646R646WCggTgg11AY.510.000909
ORF1ab/nsp3646R646WCggTgg11AY.580.000907
ORF1ab/nsp3646R646WCggTgg11AY.590.00053
ORF1ab/nsp3646R646WCggTgg11AY.60.000041
ORF1ab/nsp3646R646RcgGcgA11AY.60.000041
ORF1ab/nsp3646R646LcGgcTg11AY.610.000105
ORF1ab/nsp3646R646QcGgcAg11AY.610.000105
ORF1ab/nsp3646R646delCGG---11AY.670.000464
ORF1ab/nsp3646R646WCggTgg11AY.70.000196
ORF1ab/nsp3646R646delCGG---11AY.720.001361
ORF1ab/nsp3646R646WCggTgg11AY.740.000116
ORF1ab/nsp3646R646RcgGcgT11AY.750.000056
ORF1ab/nsp3646R646LcGgcTg11AY.75.10.00018
ORF1ab/nsp3646R646RcgGcgT11AY.760.004831
ORF1ab/nsp3646R646QcGgcAg11AY.790.001211
ORF1ab/nsp3646R646ICGGATT11AY.820.001357
ORF1ab/nsp3646R646QcGgcAg11AY.840.000437
ORF1ab/nsp3646R646QcGgcAg11AY.860.00083
ORF1ab/nsp3646R646RcgGcgT11AY.880.000884
ORF1ab/nsp3646R646QcGgcAg11AY.9.20.000037
ORF1ab/nsp3646R646LcGgcTg11AY.9.20.000037
ORF1ab/nsp3646R646LcGgcTg11AY.910.00073
ORF1ab/nsp3646R646WCggTgg11AY.930.000273
ORF1ab/nsp3646R646KCGgAAg11AY.980.000079
ORF1ab/nsp3646R646QcGgcAg11AY.980.000079
ORF1ab/nsp3646R646QcGgcAg11AY.98.10.000048
ORF1ab/nsp3646R646delCGG---11AY.990.001049
ORF1ab/nsp3646R646WCggTgg11AY.99.10.001553
ORF1ab/nsp3646R646delCGG---11B0.000128
ORF1ab/nsp3646R646PcGgcCg11B0.000128
ORF1ab/nsp3646R646GCggGgg11B.10.000009
ORF1ab/nsp3646R646PcGgcCg11B.10.000009
ORF1ab/nsp3646R646LcGgcTg11B.1.10.000018
ORF1ab/nsp3646R646del1Cgg-gg11B.1.10.000018
ORF1ab/nsp3646R646RCggAgg11B.1.1.100.001115
ORF1ab/nsp3646R646WCggTgg11B.1.1.100.001115
ORF1ab/nsp3646R646delCGG---11B.1.1.1420.017544
ORF1ab/nsp3646R646WCggTgg11B.1.1.1700.001247
ORF1ab/nsp3646R646WCggTgg11B.1.1.2040.00304
ORF1ab/nsp3646R646WCggTgg11B.1.1.2070.001182
ORF1ab/nsp3646R646QcGgcAg11B.1.1.2160.00089
ORF1ab/nsp3646R646WCggTgg11B.1.1.2200.001859
ORF1ab/nsp3646R646WCggTgg11B.1.1.2430.004082
ORF1ab/nsp3646R646LcGgcTg11B.1.1.3060.000438
ORF1ab/nsp3646R646WCggTgg11B.1.1.330.000421
ORF1ab/nsp3646R646WCggTgg11B.1.1.340.013158
ORF1ab/nsp3646R646WCggTgg11B.1.1.370.000193
ORF1ab/nsp3646R646QcGgcAg11B.1.1.3720.000689
ORF1ab/nsp3646R646WCggTgg11B.1.1.3970.002252
ORF1ab/nsp3646R646WCggTgg11B.1.1.4090.002833
ORF1ab/nsp3646R646delCGG---11B.1.1.4090.002833
ORF1ab/nsp3646R646QcGgcAg11B.1.1.4340.000349
ORF1ab/nsp3646R646WCggTgg11B.1.1.4350.034483
ORF1ab/nsp3646R646WCggTgg11B.1.1.5120.028571
ORF1ab/nsp3646R646delCGG---11B.1.1.5190.00004
ORF1ab/nsp3646R646WCggTgg11B.1.1.5190.00004
ORF1ab/nsp3646R646GCggGgg11B.1.1.70.000001
ORF1ab/nsp3646R646WCggTgg11B.1.1.700.000341
ORF1ab/nsp3646R646WCggTgg11B.1.1470.000756
ORF1ab/nsp3646R646delCGG---11B.1.1570.002985
ORF1ab/nsp3646R646QcGgcAg11B.1.1600.000031
ORF1ab/nsp3646R646RcgGcgT11B.1.1600.000031
ORF1ab/nsp3646R646delCGG---11B.1.160.70.002079
ORF1ab/nsp3646R646LcGgcTg11B.1.1660.008475
ORF1ab/nsp3646R646RcgGcgT11B.1.1700.00431
ORF1ab/nsp3646R646WCggTgg11B.1.177.170.000821
ORF1ab/nsp3646R646WCggTgg11B.1.177.210.000076
ORF1ab/nsp3646R646WCggTgg11B.1.177.410.0025
ORF1ab/nsp3646R646QcGgcAg11B.1.177.530.002392
ORF1ab/nsp3646R646WCggTgg11B.1.177.540.000606
ORF1ab/nsp3646R646delCGG---11B.1.177.540.000606
ORF1ab/nsp3646R646LcGgcTg11B.1.177.570.000281
ORF1ab/nsp3646R646delCGG---11B.1.177.630.002703
ORF1ab/nsp3646R646delCGG---11B.1.177.690.001484
ORF1ab/nsp3646R646WCggTgg11B.1.177.730.000566
ORF1ab/nsp3646R646RcgGcgA11B.1.177.730.000566
ORF1ab/nsp3646R646delCGG---11B.1.177.810.000189
ORF1ab/nsp3646R646WCggTgg11B.1.177.860.000183
ORF1ab/nsp3646R646LcGgcTg11B.1.20.000009
ORF1ab/nsp3646R646PcGgcCg11B.1.20.000009
ORF1ab/nsp3646R646RcgGcgT11B.1.2100.002132
ORF1ab/nsp3646R646WCggTgg11B.1.220.001318
ORF1ab/nsp3646R646SCGgTCg11B.1.2210.000071
ORF1ab/nsp3646R646CCgGTgT11B.1.2210.000071
ORF1ab/nsp3646R646FCGGTTT11B.1.2210.000071
ORF1ab/nsp3646R646PcGgcCg11B.1.2210.000071
ORF1ab/nsp3646R646XCgGTgA11B.1.2210.000071
ORF1ab/nsp3646R646QcGgcAg11B.1.2210.000071
ORF1ab/nsp3646R646WCggTgg11B.1.2350.002519
ORF1ab/nsp3646R646WCggTgg11B.1.2390.001221
ORF1ab/nsp3646R646WCggTgg11B.1.258.110.000396
ORF1ab/nsp3646R646RcgGcgT11B.1.258.170.000104
ORF1ab/nsp3646R646WCggTgg11B.1.30.002618
ORF1ab/nsp3646R646LcGgcTg11B.1.3060.005714
ORF1ab/nsp3646R646WCggTgg11B.1.3110.000275
ORF1ab/nsp3646R646delCGG---11B.1.3190.003049
ORF1ab/nsp3646R646WCggTgg11B.1.3380.008621
ORF1ab/nsp3646R646delCGG---11B.1.3400.004292
ORF1ab/nsp3646R646WCggTgg11B.1.3490.000715
ORF1ab/nsp3646R646RcgGcgT11B.1.3510.00003
ORF1ab/nsp3646R646RcgGcgA11B.1.351.50.0006
ORF1ab/nsp3646R646QcGgcAg11B.1.360.000146
ORF1ab/nsp3646R646delCGG---11B.1.360.000146
ORF1ab/nsp3646R646RcgGcgC11B.1.36.240.006173
ORF1ab/nsp3646R646WCggTgg11B.1.36.290.000517
ORF1ab/nsp3646R646QcGgcAg11B.1.36.290.000517
ORF1ab/nsp3646R646WCggTgg11B.1.36.390.002217
ORF1ab/nsp3646R646QcGgcAg11B.1.3690.000285
ORF1ab/nsp3646R646RcgGcgA11B.1.3690.000285
ORF1ab/nsp3646R646WCggTgg11B.1.3690.000285
ORF1ab/nsp3646R646RcgGcgT11B.1.3750.00082
ORF1ab/nsp3646R646RCggAgg11B.1.3960.000706
ORF1ab/nsp3646R646RcgGcgT11B.1.4160.001269
ORF1ab/nsp3646R646LcGgcTg11B.1.4270.00005
ORF1ab/nsp3646R646RcgGcgA11B.1.4290.000024
ORF1ab/nsp3646R646delCGG---11B.1.4340.052632
ORF1ab/nsp3646R646WCggTgg11B.1.4530.003236
ORF1ab/nsp3646R646RCggAgg11B.1.4700.001404
ORF1ab/nsp3646R646WCggTgg11B.1.4740.001901
ORF1ab/nsp3646R646WCggTgg11B.1.4990.00105
ORF1ab/nsp3646R646RcgGcgT11B.1.5030.002488
ORF1ab/nsp3646R646WCggTgg11B.1.5090.000866
ORF1ab/nsp3646R646LcGgcTg11B.1.5250.000113
ORF1ab/nsp3646R646WCggTgg11B.1.5610.000397
ORF1ab/nsp3646R646WCggTgg11B.1.5650.00081
ORF1ab/nsp3646R646QcGgcAg11B.1.5690.014493
ORF1ab/nsp3646R646WCggTgg11B.1.5760.000907
ORF1ab/nsp3646R646QcGgcAg11B.1.5800.004065
ORF1ab/nsp3646R646WCggTgg11B.1.5820.000491
ORF1ab/nsp3646R646QcGgcAg11B.1.5950.000261
ORF1ab/nsp3646R646RcgGcgA11B.1.5950.000261
ORF1ab/nsp3646R646del1cgGcg-11B.1.5950.000261
ORF1ab/nsp3646R646WCggTgg11B.1.5950.000261
ORF1ab/nsp3646R646RcgGcgT11B.1.5960.000087
ORF1ab/nsp3646R646WCggTgg11B.1.617.10.000129
ORF1ab/nsp3646R646GCggGgg11B.1.617.20.000004
ORF1ab/nsp3646R646delCGG---11B.1.6210.000089
ORF1ab/nsp3646R646RCggAgg11B.1.6230.000536
ORF1ab/nsp3646R646delCGG---11B.150.017544
ORF1ab/nsp3646R646RcgGcgT11B.4.50.011905
ORF1ab/nsp3646R646WCggTgg11B.4.50.011905
ORF1ab/nsp3646R646WCggTgg11C.140.004329
ORF1ab/nsp3646R646WCggTgg11C.370.000116
ORF1ab/nsp3646R646WCggTgg11C.37.10.002618
ORF1ab/nsp3646R646QcGgcAg11D.20.000075
ORF1ab/nsp3646R646WCggTgg11P.1.10.000318
ORF1ab/nsp3646R646del1cgGcg-11P.1.10.000318
ORF1ab/nsp3646R646GCggGgg11P.1.140.000048
ORF1ab/nsp3646R646LcGgcTg11P.1.140.000048
ORF1ab/nsp3646R646WCggTgg11P.1.160.000374
ORF1ab/nsp3646R646WCggTgg11P.1.170.000162
ORF1ab/nsp3646R646WCggTgg11P.1.40.000977
ORF1ab/nsp3646R646WCggTgg11P.1.70.000319
ORF1ab/nsp3646R646WCggTgg11P.1.80.004785
ORF1ab/nsp3646R646delCGG---11Q.20.000613
ORF1ab/nsp3646R646QcGgcAg11Q.30.000145
ORF1ab/nsp3646R646WCggTgg11Q.40.000455
ORF1ab/nsp3646R646WCggTgg11R.10.00009
ORF1ab/nsp3646R646RcgGcgT11R.10.00009
ORF1ab/nsp3646R646WCggTgg11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.