CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 641 & Codon = Ctg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3641L641LL1459LsynTtgCtg11135780.5193174640-4642

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3641L641LTtgCtg5781113All0.000111
ORF1ab/nsp3641L641LTtgCtg210210B.1.220.27668
ORF1ab/nsp3641L641LTtgCtg205205B.1.4290.004823
ORF1ab/nsp3641L641LTtgCtg2071B.1.1.70.000018
ORF1ab/nsp3641L641LTtgCtg3758AY.440.000225
ORF1ab/nsp3641L641LTtgCtg143B.1.1770.000013
ORF1ab/nsp3641L641LTtgCtg2935B.1.1600.000904
ORF1ab/nsp3641L641LTtgCtg3232B.1.22.11
ORF1ab/nsp3641L641LTtgCtg526B.1.10.000091
ORF1ab/nsp3641L641LTtgCtg1225AY.40.000019
ORF1ab/nsp3641L641LTtgCtg119B.1.617.20.000004
ORF1ab/nsp3641L641LTtgCtg814B.10.000073
ORF1ab/nsp3641L641LTtgCtg14AY.430.000004
ORF1ab/nsp3641L641LTtgCtg13B.1.1.250.000569
ORF1ab/nsp3641L641LTtgCtg12AY.250.000006
ORF1ab/nsp3641L641LTtgCtg22B.1.1.3890.012121
ORF1ab/nsp3641L641LTtgCtg12B.1.110.30.000718
ORF1ab/nsp3641L641LTtgCtg12B.1.3510.00003
ORF1ab/nsp3641L641LTtgCtg11AY.500.000799
ORF1ab/nsp3641L641LTtgCtg11AY.590.00053
ORF1ab/nsp3641L641LTtgCtg11B.1.1.2160.00089
ORF1ab/nsp3641L641LTtgCtg11B.1.1.2200.001859
ORF1ab/nsp3641L641LTtgCtg11B.1.1.530.013699
ORF1ab/nsp3641L641LTtgCtg11B.1.177.70.000165
ORF1ab/nsp3641L641LTtgCtg11B.1.177.860.000183
ORF1ab/nsp3641L641LTtgCtg11B.1.2060.000816
ORF1ab/nsp3641L641LTtgCtg11B.1.3690.000285
ORF1ab/nsp3641L641LTtgCtg11B.1.4270.00005
ORF1ab/nsp3641L641LTtgCtg11P.60.003145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.