CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 617 & Codon = atA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3617I617II1435IsynatCatA22391310.05850834568-4570

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3617I617IatCatA1312239All0.000025
ORF1ab/nsp3617I617IatCatA401229B.1.1.70.000036
ORF1ab/nsp3617I617IatCatA178AY.250.000006
ORF1ab/nsp3617I617IatCatA275AY.430.000009
ORF1ab/nsp3617I617IatCatA463B.1.617.20.000015
ORF1ab/nsp3617I617IatCatA146AY.40.000002
ORF1ab/nsp3617I617IatCatA3535AY.790.042373
ORF1ab/nsp3617I617IatCatA131AY.50.000021
ORF1ab/nsp3617I617IatCatA2528B.1.6210.002213
ORF1ab/nsp3617I617IatCatA127AY.260.000028
ORF1ab/nsp3617I617IatCatA526B.10.000046
ORF1ab/nsp3617I617IatCatA15AY.30.00001
ORF1ab/nsp3617I617IatCatA14AY.1020.000027
ORF1ab/nsp3617I617IatCatA14C.370.000116
ORF1ab/nsp3617I617IatCatA23AY.1130.000285
ORF1ab/nsp3617I617IatCatA13AY.1180.000063
ORF1ab/nsp3617I617IatCatA13B.1.4290.000024
ORF1ab/nsp3617I617IatCatA12AY.520.000814
ORF1ab/nsp3617I617IatCatA22B.1.1.3060.000877
ORF1ab/nsp3617I617IatCatA22P.1.140.000096
ORF1ab/nsp3617I617IatCatA11B.1.1.250.000569
ORF1ab/nsp3617I617IatCatA11B.1.1.2750.011236
ORF1ab/nsp3617I617IatCatA11B.1.36.220.001208
ORF1ab/nsp3617I617IatCatA11B.1.4990.00105

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.