CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 617

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3617I617II1435IsynatCatT223921080.9414924568-4570
ORF1ab/nsp3617I617II1435IsynatCatA22391310.05850834568-4570
ORF1ab/nsp3617I617VI1435VnonsynAtcGtc45345314568-4570
ORF1ab/nsp3617I617delI1435deldelATC---626214568-4570
ORF1ab/nsp3617I617TI1435TnonsynaTcaCc5514568-4570
ORF1ab/nsp3617I617LI1435LnonsynAtcCtc1114568-4570
ORF1ab/nsp3617I617NI1435NnonsynaTcaAc1114568-4570
ORF1ab/nsp3617I617del1I1435del1delAtc-tc1114568-4570
ORF1ab/nsp3617I617MI1435MnonsynatCatG1114568-4570

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3617I617IatCatT21082239All0.000403
ORF1ab/nsp3617I617IatCatA1312239All0.000025
ORF1ab/nsp3617I617IatCatT11891229B.1.1.70.001064
ORF1ab/nsp3617I617IatCatA401229B.1.1.70.000036
ORF1ab/nsp3617I617VAtcGtc453453All0.000087
ORF1ab/nsp3617I617IatCatT7778AY.250.000463
ORF1ab/nsp3617I617IatCatA178AY.250.000006
ORF1ab/nsp3617I617IatCatT7375AY.430.000323
ORF1ab/nsp3617I617IatCatA275AY.430.000009
ORF1ab/nsp3617I617VAtcGtc7070AY.250.000421
ORF1ab/nsp3617I617VAtcGtc6767B.1.1.70.00006
ORF1ab/nsp3617I617VAtcGtc6363AY.30.000627
ORF1ab/nsp3617I617IatCatT5963B.1.617.20.000222
ORF1ab/nsp3617I617IatCatA463B.1.617.20.000015
ORF1ab/nsp3617I617delATC---6262All0.000012
ORF1ab/nsp3617I617VAtcGtc5757AY.40.000089
ORF1ab/nsp3617I617IatCatT5353AY.440.000323
ORF1ab/nsp3617I617IatCatT5353B.1.3480.963636
ORF1ab/nsp3617I617IatCatT4546AY.40.00007
ORF1ab/nsp3617I617IatCatA146AY.40.000002
ORF1ab/nsp3617I617IatCatT4545B.1.2580.002995
ORF1ab/nsp3617I617IatCatT4242AY.460.004371
ORF1ab/nsp3617I617IatCatT4242B.1.20.00037
ORF1ab/nsp3617I617IatCatA3535AY.790.042373
ORF1ab/nsp3617I617IatCatT3031AY.50.000619
ORF1ab/nsp3617I617IatCatA131AY.50.000021
ORF1ab/nsp3617I617IatCatA2528B.1.6210.002213
ORF1ab/nsp3617I617IatCatT328B.1.6210.000266
ORF1ab/nsp3617I617IatCatT2627AY.260.000736
ORF1ab/nsp3617I617IatCatA127AY.260.000028
ORF1ab/nsp3617I617IatCatT2727P.10.000425
ORF1ab/nsp3617I617IatCatT2126B.10.000192
ORF1ab/nsp3617I617IatCatA526B.10.000046
ORF1ab/nsp3617I617IatCatT2626B.1.10.000472
ORF1ab/nsp3617I617IatCatT2525AY.9.20.000918
ORF1ab/nsp3617I617VAtcGtc2525B.1.617.20.000094
ORF1ab/nsp3617I617VAtcGtc2121AY.440.000128
ORF1ab/nsp3617I617IatCatT2020AY.99.20.001843
ORF1ab/nsp3617I617delATC---2020B.1.1.70.000018
ORF1ab/nsp3617I617IatCatT1919B.1.2210.00135
ORF1ab/nsp3617I617IatCatT1818B.1.177.440.009341
ORF1ab/nsp3617I617IatCatT1717AY.240.007328
ORF1ab/nsp3617I617VAtcGtc1717AY.430.000075
ORF1ab/nsp3617I617IatCatT1313B.1.5260.000306
ORF1ab/nsp3617I617VAtcGtc1111AY.4.20.000239
ORF1ab/nsp3617I617IatCatT1010B.1.1600.000312
ORF1ab/nsp3617I617VAtcGtc99AY.1030.000056
ORF1ab/nsp3617I617IatCatT88AY.470.000249
ORF1ab/nsp3617I617VAtcGtc88B.1.20.00007
ORF1ab/nsp3617I617IatCatT77AY.390.000173
ORF1ab/nsp3617I617VAtcGtc77AY.5.30.002362
ORF1ab/nsp3617I617IatCatT66AY.1030.000037
ORF1ab/nsp3617I617IatCatT66AY.1190.000212
ORF1ab/nsp3617I617IatCatT66AY.46.20.003812
ORF1ab/nsp3617I617VAtcGtc66B.1.1.1590.028037
ORF1ab/nsp3617I617TaTcaCc55All0.000001
ORF1ab/nsp3617I617VAtcGtc55AY.1020.000133
ORF1ab/nsp3617I617IatCatT45AY.30.00004
ORF1ab/nsp3617I617IatCatA15AY.30.00001
ORF1ab/nsp3617I617VAtcGtc55B.1.1600.000156
ORF1ab/nsp3617I617IatCatT55B.1.177.210.000382
ORF1ab/nsp3617I617IatCatT34AY.1020.00008
ORF1ab/nsp3617I617IatCatA14AY.1020.000027
ORF1ab/nsp3617I617IatCatT44AY.200.000155
ORF1ab/nsp3617I617IatCatT44AY.230.000279
ORF1ab/nsp3617I617delATC---44AY.40.000006
ORF1ab/nsp3617I617VAtcGtc44B.1.160.260.009685
ORF1ab/nsp3617I617VAtcGtc44B.1.3510.000119
ORF1ab/nsp3617I617IatCatT44B.1.4160.005076
ORF1ab/nsp3617I617IatCatT34C.370.000348
ORF1ab/nsp3617I617IatCatA14C.370.000116
ORF1ab/nsp3617I617IatCatT33A.2.50.001497
ORF1ab/nsp3617I617IatCatA23AY.1130.000285
ORF1ab/nsp3617I617IatCatT13AY.1130.000142
ORF1ab/nsp3617I617IatCatT23AY.1180.000125
ORF1ab/nsp3617I617IatCatA13AY.1180.000063
ORF1ab/nsp3617I617VAtcGtc33AY.350.000699
ORF1ab/nsp3617I617IatCatT33AY.4.20.000065
ORF1ab/nsp3617I617delATC---33AY.420.000121
ORF1ab/nsp3617I617IatCatT33AY.850.001282
ORF1ab/nsp3617I617VAtcGtc33AY.940.001328
ORF1ab/nsp3617I617VAtcGtc33B.1.10.000054
ORF1ab/nsp3617I617IatCatT33B.1.1.2140.000166
ORF1ab/nsp3617I617IatCatT33B.1.1.3850.013393
ORF1ab/nsp3617I617VAtcGtc33B.1.1.390.001529
ORF1ab/nsp3617I617IatCatT33B.1.1.4400.035294
ORF1ab/nsp3617I617IatCatT33B.1.1.5190.000119
ORF1ab/nsp3617I617IatCatT33B.1.1.5260.010638
ORF1ab/nsp3617I617VAtcGtc33B.1.1110.003525
ORF1ab/nsp3617I617IatCatT33B.1.1770.00004
ORF1ab/nsp3617I617IatCatT33B.1.2340.000396
ORF1ab/nsp3617I617IatCatT33B.1.3690.000856
ORF1ab/nsp3617I617VAtcGtc33B.1.4270.000151
ORF1ab/nsp3617I617IatCatT23B.1.4290.000047
ORF1ab/nsp3617I617IatCatA13B.1.4290.000024
ORF1ab/nsp3617I617VAtcGtc33B.1.5960.000261
ORF1ab/nsp3617I617VAtcGtc22AY.1130.000285
ORF1ab/nsp3617I617IatCatT22AY.1140.000462
ORF1ab/nsp3617I617VAtcGtc22AY.140.000176
ORF1ab/nsp3617I617IatCatT22AY.140.000176
ORF1ab/nsp3617I617VAtcGtc22AY.260.000057
ORF1ab/nsp3617I617IatCatT22AY.290.000032
ORF1ab/nsp3617I617VAtcGtc22AY.290.000032
ORF1ab/nsp3617I617VAtcGtc22AY.330.000134
ORF1ab/nsp3617I617IatCatT22AY.39.10.000079
ORF1ab/nsp3617I617TaTcaCc22AY.40.000003
ORF1ab/nsp3617I617VAtcGtc22AY.4.50.000215
ORF1ab/nsp3617I617IatCatT22AY.4.50.000215
ORF1ab/nsp3617I617IatCatT12AY.520.000814
ORF1ab/nsp3617I617IatCatA12AY.520.000814
ORF1ab/nsp3617I617IatCatT22AY.540.000191
ORF1ab/nsp3617I617IatCatT22AY.7.10.000225
ORF1ab/nsp3617I617VAtcGtc22AY.750.000112
ORF1ab/nsp3617I617IatCatT22AY.75.10.000361
ORF1ab/nsp3617I617delATC---22AY.9.10.000167
ORF1ab/nsp3617I617VAtcGtc22B.10.000018
ORF1ab/nsp3617I617delATC---22B.10.000018
ORF1ab/nsp3617I617VAtcGtc22B.1.1.2140.000111
ORF1ab/nsp3617I617IatCatA22B.1.1.3060.000877
ORF1ab/nsp3617I617IatCatT22B.1.1.4860.003155
ORF1ab/nsp3617I617delATC---22B.1.1.5190.000079
ORF1ab/nsp3617I617IatCatT22B.1.1260.002551
ORF1ab/nsp3617I617delATC---22B.1.1770.000026
ORF1ab/nsp3617I617VAtcGtc22B.1.1770.000026
ORF1ab/nsp3617I617IatCatT22B.1.177.50.002484
ORF1ab/nsp3617I617VAtcGtc22B.1.177.560.001335
ORF1ab/nsp3617I617IatCatT22B.1.2220.003384
ORF1ab/nsp3617I617IatCatT22B.1.3510.000059
ORF1ab/nsp3617I617VAtcGtc22B.1.36.290.001035
ORF1ab/nsp3617I617VAtcGtc22B.1.4290.000047
ORF1ab/nsp3617I617VAtcGtc22B.1.5260.000047
ORF1ab/nsp3617I617IatCatT22B.1.5820.000981
ORF1ab/nsp3617I617IatCatT22B.1.617.10.000258
ORF1ab/nsp3617I617delATC---22P.10.000032
ORF1ab/nsp3617I617IatCatA22P.1.140.000096
ORF1ab/nsp3617I617VAtcGtc22W.40.002703
ORF1ab/nsp3617I617delATC---11A0.000387
ORF1ab/nsp3617I617IatCatT11A0.000387
ORF1ab/nsp3617I617delATC---11A.2.20.001689
ORF1ab/nsp3617I617VAtcGtc11AL.10.012987
ORF1ab/nsp3617I617LAtcCtc11All0
ORF1ab/nsp3617I617NaTcaAc11All0
ORF1ab/nsp3617I617del1Atc-tc11All0
ORF1ab/nsp3617I617MatCatG11All0
ORF1ab/nsp3617I617IatCatT11AT.10.005128
ORF1ab/nsp3617I617VAtcGtc11AY.10.000396
ORF1ab/nsp3617I617IatCatT11AY.1000.000046
ORF1ab/nsp3617I617IatCatT11AY.1060.000335
ORF1ab/nsp3617I617IatCatT11AY.1070.000466
ORF1ab/nsp3617I617IatCatT11AY.1100.000113
ORF1ab/nsp3617I617IatCatT11AY.1170.000085
ORF1ab/nsp3617I617VAtcGtc11AY.1190.000035
ORF1ab/nsp3617I617IatCatT11AY.1200.000037
ORF1ab/nsp3617I617IatCatT11AY.120.10.000321
ORF1ab/nsp3617I617IatCatT11AY.120.20.001285
ORF1ab/nsp3617I617IatCatT11AY.29.10.000221
ORF1ab/nsp3617I617IatCatT11AY.330.000067
ORF1ab/nsp3617I617VAtcGtc11AY.340.000097
ORF1ab/nsp3617I617IatCatT11AY.340.000097
ORF1ab/nsp3617I617VAtcGtc11AY.390.000025
ORF1ab/nsp3617I617delATC---11AY.430.000004
ORF1ab/nsp3617I617NaTcaAc11AY.440.000006
ORF1ab/nsp3617I617TaTcaCc11AY.450.000122
ORF1ab/nsp3617I617IatCatT11AY.46.40.000165
ORF1ab/nsp3617I617delATC---11AY.50.000021
ORF1ab/nsp3617I617IatCatT11AY.5.30.000337
ORF1ab/nsp3617I617delATC---11AY.520.000814
ORF1ab/nsp3617I617IatCatT11AY.610.000105
ORF1ab/nsp3617I617delATC---11AY.670.000464
ORF1ab/nsp3617I617IatCatT11AY.80.000606
ORF1ab/nsp3617I617delATC---11AY.850.000427
ORF1ab/nsp3617I617IatCatT11AY.870.000833
ORF1ab/nsp3617I617VAtcGtc11AY.98.10.000048
ORF1ab/nsp3617I617delATC---11AY.990.001049
ORF1ab/nsp3617I617IatCatT11B0.000128
ORF1ab/nsp3617I617TaTcaCc11B.10.000009
ORF1ab/nsp3617I617MatCatG11B.10.000009
ORF1ab/nsp3617I617delATC---11B.1.1.1420.017544
ORF1ab/nsp3617I617VAtcGtc11B.1.1.1450.037037
ORF1ab/nsp3617I617VAtcGtc11B.1.1.1530.001095
ORF1ab/nsp3617I617IatCatT11B.1.1.1700.001247
ORF1ab/nsp3617I617VAtcGtc11B.1.1.1760.000439
ORF1ab/nsp3617I617VAtcGtc11B.1.1.2010.02439
ORF1ab/nsp3617I617IatCatA11B.1.1.250.000569
ORF1ab/nsp3617I617IatCatT11B.1.1.2630.001558
ORF1ab/nsp3617I617IatCatA11B.1.1.2750.011236
ORF1ab/nsp3617I617VAtcGtc11B.1.1.280.000311
ORF1ab/nsp3617I617IatCatT11B.1.1.2940.001266
ORF1ab/nsp3617I617delATC---11B.1.1.3150.008475
ORF1ab/nsp3617I617VAtcGtc11B.1.1.3260.001761
ORF1ab/nsp3617I617IatCatT11B.1.1.390.00051
ORF1ab/nsp3617I617delATC---11B.1.1.4090.002833
ORF1ab/nsp3617I617IatCatT11B.1.1.4160.000905
ORF1ab/nsp3617I617LAtcCtc11B.1.1.70.000001
ORF1ab/nsp3617I617VAtcGtc11B.1.1280.000635
ORF1ab/nsp3617I617delATC---11B.1.1570.002985
ORF1ab/nsp3617I617delATC---11B.1.177.40.000211
ORF1ab/nsp3617I617IatCatT11B.1.177.420.000894
ORF1ab/nsp3617I617IatCatT11B.1.177.620.001192
ORF1ab/nsp3617I617delATC---11B.1.177.630.002703
ORF1ab/nsp3617I617delATC---11B.1.177.760.002494
ORF1ab/nsp3617I617delATC---11B.1.177.870.000728
ORF1ab/nsp3617I617delATC---11B.1.20.000009
ORF1ab/nsp3617I617TaTcaCc11B.1.2140.003663
ORF1ab/nsp3617I617IatCatT11B.1.2430.00007
ORF1ab/nsp3617I617IatCatT11B.1.3110.000275
ORF1ab/nsp3617I617delATC---11B.1.3190.003049
ORF1ab/nsp3617I617IatCatT11B.1.3370.005587
ORF1ab/nsp3617I617VAtcGtc11B.1.3440.008197
ORF1ab/nsp3617I617delATC---11B.1.360.000146
ORF1ab/nsp3617I617delATC---11B.1.36.170.000494
ORF1ab/nsp3617I617IatCatA11B.1.36.220.001208
ORF1ab/nsp3617I617IatCatT11B.1.36.310.001751
ORF1ab/nsp3617I617VAtcGtc11B.1.3670.000792
ORF1ab/nsp3617I617VAtcGtc11B.1.4110.003704
ORF1ab/nsp3617I617IatCatT11B.1.466.20.000391
ORF1ab/nsp3617I617VAtcGtc11B.1.4970.000315
ORF1ab/nsp3617I617IatCatA11B.1.4990.00105
ORF1ab/nsp3617I617VAtcGtc11B.1.5170.000427
ORF1ab/nsp3617I617IatCatT11B.1.5240.001406
ORF1ab/nsp3617I617VAtcGtc11B.1.5610.000397
ORF1ab/nsp3617I617IatCatT11B.1.5680.001111
ORF1ab/nsp3617I617IatCatT11B.1.5760.000907
ORF1ab/nsp3617I617IatCatT11B.1.5950.000261
ORF1ab/nsp3617I617IatCatT11B.1.5960.000087
ORF1ab/nsp3617I617IatCatT11B.1.6050.005952
ORF1ab/nsp3617I617delATC---11B.1.6090.000479
ORF1ab/nsp3617I617IatCatT11B.1.6090.000479
ORF1ab/nsp3617I617del1Atc-tc11B.1.6120.002653
ORF1ab/nsp3617I617delATC---11B.1.6210.000089
ORF1ab/nsp3617I617VAtcGtc11B.1.6210.000089
ORF1ab/nsp3617I617IatCatT11B.1.6250.002353
ORF1ab/nsp3617I617VAtcGtc11B.1.6280.000352
ORF1ab/nsp3617I617IatCatT11B.1.930.000934
ORF1ab/nsp3617I617delATC---11B.150.017544
ORF1ab/nsp3617I617IatCatT11D.20.000075
ORF1ab/nsp3617I617IatCatT11N.30.005814
ORF1ab/nsp3617I617VAtcGtc11P.1.100.000269
ORF1ab/nsp3617I617VAtcGtc11P.1.170.000162
ORF1ab/nsp3617I617delATC---11P.1.40.000977
ORF1ab/nsp3617I617IatCatT11P.20.000187
ORF1ab/nsp3617I617IatCatT11Q.10.000126
ORF1ab/nsp3617I617IatCatT11Q.80.000165
ORF1ab/nsp3617I617delATC---11R.10.00009
ORF1ab/nsp3617I617IatCatT11Z.10.00289