CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 616 & Codon = ctC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3616L616LL1434LsynctTctC1581340.8481014565-4567

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3616L616LctTctC134158All0.000026
ORF1ab/nsp3616L616LctTctC1226B.1.1.70.000011
ORF1ab/nsp3616L616LctTctC1919B.1.177.800.036329
ORF1ab/nsp3616L616LctTctC1516B.1.4290.000353
ORF1ab/nsp3616L616LctTctC1515B.1.6090.007191
ORF1ab/nsp3616L616LctTctC1012AY.1030.000062
ORF1ab/nsp3616L616LctTctC1212B.1.20.000106
ORF1ab/nsp3616L616LctTctC67B.10.000055
ORF1ab/nsp3616L616LctTctC35AY.440.000018
ORF1ab/nsp3616L616LctTctC45B.1.1770.000053
ORF1ab/nsp3616L616LctTctC44AY.30.00004
ORF1ab/nsp3616L616LctTctC44AY.40.000006
ORF1ab/nsp3616L616LctTctC44B.1.10.000073
ORF1ab/nsp3616L616LctTctC24B.1.617.20.000008
ORF1ab/nsp3616L616LctTctC33AY.540.000286
ORF1ab/nsp3616L616LctTctC23P.10.000032
ORF1ab/nsp3616L616LctTctC22AY.1200.000074
ORF1ab/nsp3616L616LctTctC22AY.230.000139
ORF1ab/nsp3616L616LctTctC22AY.250.000012
ORF1ab/nsp3616L616LctTctC22B.1.1.3540.008772
ORF1ab/nsp3616L616LctTctC11AY.1020.000027
ORF1ab/nsp3616L616LctTctC11AY.280.00189
ORF1ab/nsp3616L616LctTctC11AY.430.000004
ORF1ab/nsp3616L616LctTctC11AY.590.00053
ORF1ab/nsp3616L616LctTctC11AY.70.000196
ORF1ab/nsp3616L616LctTctC11B.1.1600.000031
ORF1ab/nsp3616L616LctTctC11B.1.177.770.000726
ORF1ab/nsp3616L616LctTctC11B.1.177.80.000752
ORF1ab/nsp3616L616LctTctC11B.1.2760.016949
ORF1ab/nsp3616L616LctTctC11B.1.4270.00005
ORF1ab/nsp3616L616LctTctC11P.1.150.000232