CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 608 | T608T | T1426T | syn | acC | acT | 52311 | 51871 | 0.991589 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608T | T1426T | syn | acC | acA | 52311 | 434 | 0.00829653 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608T | T1426T | syn | acC | acG | 52311 | 6 | 0.000114699 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608N | T1426N | nonsyn | aCc | aAc | 151 | 150 | 0.993378 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608N | T1426N | nonsyn | aCC | aAT | 151 | 1 | 0.00662252 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608del | T1426del | del | ACC | --- | 110 | 110 | 1 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608I | T1426I | nonsyn | aCc | aTc | 30 | 28 | 0.933333 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608I | T1426I | nonsyn | aCC | aTT | 30 | 2 | 0.0666667 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608S | T1426S | nonsyn | Acc | Tcc | 20 | 16 | 0.8 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608S | T1426S | nonsyn | aCc | aGc | 20 | 3 | 0.15 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608S | T1426S | nonsyn | aCC | aGT | 20 | 1 | 0.05 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608A | T1426A | nonsyn | Acc | Gcc | 14 | 14 | 1 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608H | T1426H | nonsyn | ACc | CAc | 2 | 2 | 1 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608K | T1426K | nonsyn | aCC | aAA | 2 | 2 | 1 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608Y | T1426Y | nonsyn | ACc | TAc | 2 | 1 | 0.5 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608Y | T1426Y | nonsyn | ACC | TAT | 2 | 1 | 0.5 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608del1 | T1426del1 | del | ACC | -NN | 1 | 1 | 1 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608R | T1426R | nonsyn | aCC | aGA | 1 | 1 | 1 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608P | T1426P | nonsyn | Acc | Ccc | 1 | 1 | 1 | 4541-4543 |
ORF1ab/nsp3 | 608 | T608M | T1426M | nonsyn | aCC | aTG | 1 | 1 | 1 | 4541-4543 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 51871 | 52311 | All | 0.009921 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 434 | 52311 | All | 0.000083 |
ORF1ab/nsp3 | 608 | T608T | acC | acG | 6 | 52311 | All | 0.000001 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 29785 | 29785 | B.1.160 | 0.928923 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4957 | 4969 | B.1.1.7 | 0.004438 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 11 | 4969 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 608 | T608T | acC | acG | 1 | 4969 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1931 | 1931 | A.2.5 | 0.963573 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1049 | 1049 | B.1.160.16 | 0.974907 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 773 | 773 | B.1.160.8 | 0.996134 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 664 | 668 | AY.4 | 0.001033 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 4 | 668 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 390 | 602 | AY.103 | 0.002422 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 212 | 602 | AY.103 | 0.001316 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 599 | 599 | A.2.5.2 | 0.941824 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 587 | 587 | B.1.160.17 | 0.998299 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 539 | 546 | B.1.617.2 | 0.00203 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 6 | 546 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 608 | T608T | acC | acG | 1 | 546 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 508 | 508 | B.1.177 | 0.006689 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 481 | 481 | B.1.160.7 | 1 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 468 | 468 | B.1.160.14 | 0.991525 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 411 | 411 | B.1.160.26 | 0.995157 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 346 | 351 | B.1 | 0.003169 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 4 | 351 | B.1 | 0.000037 |
ORF1ab/nsp3 | 608 | T608T | acC | acG | 1 | 351 | B.1 | 0.000009 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 336 | 336 | B.1.160.28 | 0.982456 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 298 | 298 | B.1.427 | 0.015048 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 292 | 292 | B.1.36.1 | 0.332953 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 267 | 267 | L.3 | 0.946809 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 261 | 261 | B.1.2 | 0.002298 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 254 | 255 | AY.44 | 0.001546 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 1 | 255 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 233 | 233 | B.1.160.29 | 0.983122 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 225 | 225 | B.1.160.24 | 0.995575 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 225 | 225 | B.1.160.33 | 0.995575 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 219 | 219 | P.1 | 0.00345 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 207 | 207 | A.2.5.1 | 0.995192 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 207 | 207 | B.1.160.23 | 1 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 202 | 202 | B.1.160.15 | 1 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 201 | 201 | B.1.160.30 | 0.598214 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 187 | 187 | B.1.160.32 | 0.802575 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 171 | 173 | AY.43 | 0.000758 |
ORF1ab/nsp3 | 608 | T608T | acC | acG | 2 | 173 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 173 | 173 | B.1.160.11 | 0.988571 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 168 | 168 | B.1.561 | 0.066693 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 167 | 167 | B.1.429 | 0.003929 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 155 | 155 | B.1.160.12 | 0.99359 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 150 | 151 | All | 0.000029 |
ORF1ab/nsp3 | 608 | T608N | aCC | aAT | 1 | 151 | All | 0 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 146 | 146 | B.1.160.22 | 0.986486 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 136 | 136 | B.1.160.9 | 0.978417 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 127 | 127 | B.1.160.18 | 0.927007 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 123 | 123 | B.1.160.31 | 0.991935 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 120 | 120 | AB.1 | 0.983607 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 119 | 119 | AY.113 | 0.016944 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 118 | 118 | AY.100 | 0.005429 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 115 | 115 | B.1.160.10 | 0.927419 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 115 | 115 | B.1.526 | 0.002703 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 110 | 110 | All | 0.000021 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 106 | 106 | B.1.1 | 0.001923 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 92 | 92 | A.2.5.3 | 0.948454 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 90 | 90 | B.1.160.25 | 1 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 81 | 81 | B.1.160.20 | 0.723214 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 75 | 75 | AY.25 | 0.000451 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 75 | 75 | B.1.1.519 | 0.002978 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 73 | 73 | AY.102 | 0.001936 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 72 | 72 | B.1.221 | 0.005114 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 70 | 71 | AY.3 | 0.000696 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 1 | 71 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 68 | 68 | B.1.351 | 0.002021 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 65 | 65 | B.1.160.27 | 0.984848 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 63 | 63 | AE.8 | 0.030807 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 59 | 59 | B.1.466.2 | 0.023083 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 55 | 55 | B.1.1.277 | 0.04173 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 51 | 51 | B.1.473 | 0.980769 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 50 | 50 | B.1.637 | 0.003654 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 48 | 48 | AY.47 | 0.001493 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 46 | 46 | AY.4 | 0.000072 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 46 | 46 | AY.5 | 0.00095 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 44 | 44 | B | 0.005624 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 43 | 43 | B.1.177.31 | 0.494253 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 40 | 40 | AY.26 | 0.001132 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 40 | 40 | B.1.160.21 | 0.816327 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 39 | 39 | B.1.177.44 | 0.020239 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 35 | 36 | AY.120 | 0.001301 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 1 | 36 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 36 | 36 | B.1.160.13 | 1 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 36 | 36 | B.1.241 | 0.029221 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 35 | 35 | B.1.177.86 | 0.006421 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 34 | 34 | B.1.177.54 | 0.020619 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 33 | 33 | AY.6 | 0.001357 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 32 | 32 | AY.98.1 | 0.00155 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 31 | 31 | B.1.1.7 | 0.000028 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 28 | 30 | All | 0.000005 |
ORF1ab/nsp3 | 608 | T608I | aCC | aTT | 2 | 30 | All | 0 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 29 | 29 | AY.7 | 0.005684 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 29 | 29 | B.1.243 | 0.002018 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 29 | 29 | B.1.601 | 0.878788 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 28 | 28 | B.1.160.19 | 1 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 26 | 26 | B.1.1.420 | 0.026157 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 26 | 26 | B.1.1.445 | 0.962963 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 26 | 26 | B.1.177.57 | 0.007305 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 26 | 26 | P.1.15 | 0.006041 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 23 | 24 | AY.117 | 0.001944 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 1 | 24 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 23 | 24 | AY.39 | 0.000568 |
ORF1ab/nsp3 | 608 | T608T | acC | acG | 1 | 24 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 23 | 23 | P.1.12 | 0.011133 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 22 | 22 | B.1.177.60 | 0.004806 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 21 | 21 | B.1.409 | 0.016406 |
ORF1ab/nsp3 | 608 | T608S | Acc | Tcc | 16 | 20 | All | 0.000003 |
ORF1ab/nsp3 | 608 | T608S | aCc | aGc | 3 | 20 | All | 0.000001 |
ORF1ab/nsp3 | 608 | T608S | aCC | aGT | 1 | 20 | All | 0 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 20 | 20 | B.1.1.39 | 0.010194 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 20 | 20 | B.1.258.11 | 0.007927 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 19 | 19 | AY.46.6 | 0.001372 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 17 | 17 | Q.1 | 0.002148 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 16 | 16 | B.1.36.38 | 0.026273 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 15 | 15 | B.1.575 | 0.004551 |
ORF1ab/nsp3 | 608 | T608A | Acc | Gcc | 14 | 14 | All | 0.000003 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 14 | 14 | AY.119 | 0.000494 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 14 | 14 | AY.23 | 0.000976 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 14 | 14 | B.1.177.43 | 0.020679 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 14 | 14 | B.1.234 | 0.001847 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 13 | 14 | B.1.621 | 0.001151 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 1 | 14 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 14 | 14 | C.37 | 0.001625 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 12 | 13 | B.1.258 | 0.000799 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 1 | 13 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 13 | 13 | B.1.36 | 0.001897 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 13 | 13 | B.1.617.1 | 0.001677 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 12 | 12 | AY.42 | 0.000483 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 12 | 12 | B.1.1.28 | 0.003735 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 12 | 12 | C.14 | 0.051948 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 11 | 11 | AY.121 | 0.001488 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 6 | 11 | B.1.509 | 0.005195 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 5 | 11 | B.1.509 | 0.004329 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 10 | 10 | AY.20 | 0.000389 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 10 | 10 | B.1.1.222 | 0.00204 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 10 | 10 | B.1.1.294 | 0.012658 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 10 | 10 | B.1.177.4 | 0.002111 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 10 | 10 | B.1.311 | 0.002746 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 10 | 10 | B.1.438.1 | 0.001073 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 10 | 10 | B.1.505 | 0.04386 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 10 | 10 | B.1.525 | 0.001132 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 9 | 9 | AY.94 | 0.003984 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 9 | 9 | B.1.177.81 | 0.001704 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 9 | 9 | B.1.362 | 0.013867 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 9 | 9 | B.1.411 | 0.033333 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 9 | 9 | Q.4 | 0.004093 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 9 | 9 | R.1 | 0.00081 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 8 | 8 | AY.46.4 | 0.001316 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 7 | 8 | B.1.1.214 | 0.000388 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 1 | 8 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 8 | 8 | B.1.232 | 0.004299 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 7 | 7 | A | 0.002709 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 7 | 7 | AY.3.1 | 0.000597 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 7 | 7 | AY.93 | 0.001912 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 7 | 7 | B.1.177.73 | 0.003964 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 7 | 7 | B.1.260 | 0.023411 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 7 | 7 | P.1.1 | 0.002224 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 7 | 7 | P.1.4 | 0.006836 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 6 | 6 | B.1.1.306 | 0.00263 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 6 | 6 | B.1.1.368 | 0.018519 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 6 | 6 | B.1.1.70 | 0.002046 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 6 | 6 | B.1.177.21 | 0.000459 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | AY.10 | 0.00265 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | AY.32 | 0.002662 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | AY.52 | 0.004072 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | B.1.1.153 | 0.005476 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | B.1.36.22 | 0.006039 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | B.1.389 | 0.00501 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 608 | T608S | Acc | Tcc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | B.23 | 0.01462 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | B.6 | 0.00455 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 5 | 5 | C.36.3 | 0.002836 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | AY.108 | 0.00441 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp3 | 608 | T608S | Acc | Tcc | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | B.1.1.328 | 0.067797 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | B.1.177.23 | 0.012945 |
ORF1ab/nsp3 | 608 | T608A | Acc | Gcc | 4 | 4 | B.1.177.32 | 0.005398 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 608 | T608A | Acc | Gcc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | B.1.206 | 0.003263 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | B.1.222 | 0.006768 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | B.1.320 | 0.004981 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | B.1.36.8 | 0.004 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | B.1.469 | 0.01444 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 4 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 1 | 4 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | B.1.617.3 | 0.01194 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | B.1.620 | 0.003784 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 2 | 3 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 3 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.1.10 | 0.003344 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.1.207 | 0.003546 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.1.409 | 0.008499 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.1.416 | 0.002715 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.139 | 0.002199 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.157 | 0.008955 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.177.15 | 0.001893 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.177.8 | 0.002257 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.201 | 0.017045 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.462 | 0.021739 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.468 | 0.017143 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.1.578 | 0.053571 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | B.6.6 | 0.002667 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 608 | T608H | ACc | CAc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 608 | T608K | aCC | aAA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 608 | T608Y | ACC | TAT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 608 | T608Y | ACc | TAc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 1 | 2 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 2 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 608 | T608Y | ACc | TAc | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 608 | T608Y | ACC | TAT | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 608 | T608N | aCC | aAT | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 1 | 2 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 2 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 1 | 2 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 2 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.1.466 | 0.017391 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.177.29 | 0.133333 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.177.84 | 0.013333 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.36.10 | 0.009569 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.36.24 | 0.012346 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.378 | 0.013699 |
ORF1ab/nsp3 | 608 | T608I | aCC | aTT | 1 | 2 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 2 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | B.1.533 | 0.019231 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 608 | T608K | aCC | aAA | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 608 | T608S | Acc | Tcc | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp3 | 608 | T608R | aCC | aGA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 608 | T608M | aCC | aTG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 608 | T608del1 | ACC | -NN | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 608 | T608P | Acc | Ccc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AN.1 | 0.02 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AQ.1 | 0.071429 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 608 | T608S | Acc | Tcc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 608 | T608H | ACc | CAc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 608 | T608S | aCc | aGc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 608 | T608R | aCC | aGA | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 608 | T608A | Acc | Gcc | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 608 | T608A | Acc | Gcc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.5.1 | 0.003759 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 608 | T608S | aCc | aGc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 608 | T608S | aCc | aGc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 608 | T608H | ACc | CAc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 608 | T608M | aCC | aTG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 608 | T608del1 | ACC | -NN | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 608 | T608P | Acc | Ccc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 608 | T608S | Acc | Tcc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 608 | T608A | Acc | Gcc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.181 | 0.004545 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.343 | 0.020833 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 608 | T608A | Acc | Gcc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 608 | T608S | Acc | Tcc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.120 | 0.007692 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.124 | 0.007812 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 608 | T608S | aCC | aGT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 608 | T608S | Acc | Tcc | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.177.71 | 0.010101 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.177.89 | 0.02439 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.268 | 0.010417 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.450 | 0.011364 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 608 | T608A | Acc | Gcc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 608 | T608T | acC | acA | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp3 | 608 | T608I | aCC | aTT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 608 | T608S | Acc | Tcc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.30 | 0.014706 |
ORF1ab/nsp3 | 608 | T608S | Acc | Tcc | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 608 | T608A | Acc | Gcc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 608 | T608I | aCc | aTc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 608 | T608N | aCc | aAc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 608 | T608del | ACC | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 608 | T608T | acC | acT | 1 | 1 | Y.1 | 0.012821 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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