CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 608

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	608	T608T	T1426T	syn	acC	acT	52311	51871	0.991589	4541-4543
ORF1ab/nsp3	608	T608T	T1426T	syn	acC	acA	52311	434	0.00829653	4541-4543
ORF1ab/nsp3	608	T608T	T1426T	syn	acC	acG	52311	6	0.000114699	4541-4543
ORF1ab/nsp3	608	T608N	T1426N	nonsyn	aCc	aAc	151	150	0.993378	4541-4543
ORF1ab/nsp3	608	T608N	T1426N	nonsyn	aCC	aAT	151	1	0.00662252	4541-4543
ORF1ab/nsp3	608	T608del	T1426del	del	ACC	---	110	110	1	4541-4543
ORF1ab/nsp3	608	T608I	T1426I	nonsyn	aCc	aTc	30	28	0.933333	4541-4543
ORF1ab/nsp3	608	T608I	T1426I	nonsyn	aCC	aTT	30	2	0.0666667	4541-4543
ORF1ab/nsp3	608	T608S	T1426S	nonsyn	Acc	Tcc	20	16	0.8	4541-4543
ORF1ab/nsp3	608	T608S	T1426S	nonsyn	aCc	aGc	20	3	0.15	4541-4543
ORF1ab/nsp3	608	T608S	T1426S	nonsyn	aCC	aGT	20	1	0.05	4541-4543
ORF1ab/nsp3	608	T608A	T1426A	nonsyn	Acc	Gcc	14	14	1	4541-4543
ORF1ab/nsp3	608	T608H	T1426H	nonsyn	ACc	CAc	2	2	1	4541-4543
ORF1ab/nsp3	608	T608K	T1426K	nonsyn	aCC	aAA	2	2	1	4541-4543
ORF1ab/nsp3	608	T608Y	T1426Y	nonsyn	ACc	TAc	2	1	0.5	4541-4543
ORF1ab/nsp3	608	T608Y	T1426Y	nonsyn	ACC	TAT	2	1	0.5	4541-4543
ORF1ab/nsp3	608	T608del1	T1426del1	del	ACC	-NN	1	1	1	4541-4543
ORF1ab/nsp3	608	T608R	T1426R	nonsyn	aCC	aGA	1	1	1	4541-4543
ORF1ab/nsp3	608	T608P	T1426P	nonsyn	Acc	Ccc	1	1	1	4541-4543
ORF1ab/nsp3	608	T608M	T1426M	nonsyn	aCC	aTG	1	1	1	4541-4543

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	608	T608T	acC	acT	51871	52311	All	0.009921
ORF1ab/nsp3	608	T608T	acC	acA	434	52311	All	0.000083
ORF1ab/nsp3	608	T608T	acC	acG	6	52311	All	0.000001
ORF1ab/nsp3	608	T608T	acC	acT	29785	29785	B.1.160	0.928923
ORF1ab/nsp3	608	T608T	acC	acT	4957	4969	B.1.1.7	0.004438
ORF1ab/nsp3	608	T608T	acC	acA	11	4969	B.1.1.7	0.00001
ORF1ab/nsp3	608	T608T	acC	acG	1	4969	B.1.1.7	0.000001
ORF1ab/nsp3	608	T608T	acC	acT	1931	1931	A.2.5	0.963573
ORF1ab/nsp3	608	T608T	acC	acT	1049	1049	B.1.160.16	0.974907
ORF1ab/nsp3	608	T608T	acC	acT	773	773	B.1.160.8	0.996134
ORF1ab/nsp3	608	T608T	acC	acT	664	668	AY.4	0.001033
ORF1ab/nsp3	608	T608T	acC	acA	4	668	AY.4	0.000006
ORF1ab/nsp3	608	T608T	acC	acA	390	602	AY.103	0.002422
ORF1ab/nsp3	608	T608T	acC	acT	212	602	AY.103	0.001316
ORF1ab/nsp3	608	T608T	acC	acT	599	599	A.2.5.2	0.941824
ORF1ab/nsp3	608	T608T	acC	acT	587	587	B.1.160.17	0.998299
ORF1ab/nsp3	608	T608T	acC	acT	539	546	B.1.617.2	0.00203
ORF1ab/nsp3	608	T608T	acC	acA	6	546	B.1.617.2	0.000023
ORF1ab/nsp3	608	T608T	acC	acG	1	546	B.1.617.2	0.000004
ORF1ab/nsp3	608	T608T	acC	acT	508	508	B.1.177	0.006689
ORF1ab/nsp3	608	T608T	acC	acT	481	481	B.1.160.7	1
ORF1ab/nsp3	608	T608T	acC	acT	468	468	B.1.160.14	0.991525
ORF1ab/nsp3	608	T608T	acC	acT	411	411	B.1.160.26	0.995157
ORF1ab/nsp3	608	T608T	acC	acT	346	351	B.1	0.003169
ORF1ab/nsp3	608	T608T	acC	acA	4	351	B.1	0.000037
ORF1ab/nsp3	608	T608T	acC	acG	1	351	B.1	0.000009
ORF1ab/nsp3	608	T608T	acC	acT	336	336	B.1.160.28	0.982456
ORF1ab/nsp3	608	T608T	acC	acT	298	298	B.1.427	0.015048
ORF1ab/nsp3	608	T608T	acC	acT	292	292	B.1.36.1	0.332953
ORF1ab/nsp3	608	T608T	acC	acT	267	267	L.3	0.946809
ORF1ab/nsp3	608	T608T	acC	acT	261	261	B.1.2	0.002298
ORF1ab/nsp3	608	T608T	acC	acT	254	255	AY.44	0.001546
ORF1ab/nsp3	608	T608T	acC	acA	1	255	AY.44	0.000006
ORF1ab/nsp3	608	T608T	acC	acT	233	233	B.1.160.29	0.983122
ORF1ab/nsp3	608	T608T	acC	acT	225	225	B.1.160.24	0.995575
ORF1ab/nsp3	608	T608T	acC	acT	225	225	B.1.160.33	0.995575
ORF1ab/nsp3	608	T608T	acC	acT	219	219	P.1	0.00345
ORF1ab/nsp3	608	T608T	acC	acT	207	207	A.2.5.1	0.995192
ORF1ab/nsp3	608	T608T	acC	acT	207	207	B.1.160.23	1
ORF1ab/nsp3	608	T608T	acC	acT	202	202	B.1.160.15	1
ORF1ab/nsp3	608	T608T	acC	acT	201	201	B.1.160.30	0.598214
ORF1ab/nsp3	608	T608T	acC	acT	187	187	B.1.160.32	0.802575
ORF1ab/nsp3	608	T608T	acC	acT	171	173	AY.43	0.000758
ORF1ab/nsp3	608	T608T	acC	acG	2	173	AY.43	0.000009
ORF1ab/nsp3	608	T608T	acC	acT	173	173	B.1.160.11	0.988571
ORF1ab/nsp3	608	T608T	acC	acT	168	168	B.1.561	0.066693
ORF1ab/nsp3	608	T608T	acC	acT	167	167	B.1.429	0.003929
ORF1ab/nsp3	608	T608T	acC	acT	155	155	B.1.160.12	0.99359
ORF1ab/nsp3	608	T608N	aCc	aAc	150	151	All	0.000029
ORF1ab/nsp3	608	T608N	aCC	aAT	1	151	All	0
ORF1ab/nsp3	608	T608T	acC	acT	146	146	B.1.160.22	0.986486
ORF1ab/nsp3	608	T608T	acC	acT	136	136	B.1.160.9	0.978417
ORF1ab/nsp3	608	T608T	acC	acT	127	127	B.1.160.18	0.927007
ORF1ab/nsp3	608	T608T	acC	acT	123	123	B.1.160.31	0.991935
ORF1ab/nsp3	608	T608T	acC	acT	120	120	AB.1	0.983607
ORF1ab/nsp3	608	T608T	acC	acT	119	119	AY.113	0.016944
ORF1ab/nsp3	608	T608T	acC	acT	118	118	AY.100	0.005429
ORF1ab/nsp3	608	T608T	acC	acT	115	115	B.1.160.10	0.927419
ORF1ab/nsp3	608	T608T	acC	acT	115	115	B.1.526	0.002703
ORF1ab/nsp3	608	T608del	ACC	---	110	110	All	0.000021
ORF1ab/nsp3	608	T608T	acC	acT	106	106	B.1.1	0.001923
ORF1ab/nsp3	608	T608T	acC	acT	92	92	A.2.5.3	0.948454
ORF1ab/nsp3	608	T608T	acC	acT	90	90	B.1.160.25	1
ORF1ab/nsp3	608	T608T	acC	acT	81	81	B.1.160.20	0.723214
ORF1ab/nsp3	608	T608T	acC	acT	75	75	AY.25	0.000451
ORF1ab/nsp3	608	T608T	acC	acT	75	75	B.1.1.519	0.002978
ORF1ab/nsp3	608	T608T	acC	acT	73	73	AY.102	0.001936
ORF1ab/nsp3	608	T608T	acC	acT	72	72	B.1.221	0.005114
ORF1ab/nsp3	608	T608T	acC	acT	70	71	AY.3	0.000696
ORF1ab/nsp3	608	T608T	acC	acA	1	71	AY.3	0.00001
ORF1ab/nsp3	608	T608T	acC	acT	68	68	B.1.351	0.002021
ORF1ab/nsp3	608	T608T	acC	acT	65	65	B.1.160.27	0.984848
ORF1ab/nsp3	608	T608T	acC	acT	63	63	AE.8	0.030807
ORF1ab/nsp3	608	T608T	acC	acT	59	59	B.1.466.2	0.023083
ORF1ab/nsp3	608	T608T	acC	acT	55	55	B.1.1.277	0.04173
ORF1ab/nsp3	608	T608T	acC	acT	51	51	B.1.473	0.980769
ORF1ab/nsp3	608	T608T	acC	acT	50	50	B.1.637	0.003654
ORF1ab/nsp3	608	T608T	acC	acT	48	48	AY.47	0.001493
ORF1ab/nsp3	608	T608N	aCc	aAc	46	46	AY.4	0.000072
ORF1ab/nsp3	608	T608T	acC	acT	46	46	AY.5	0.00095
ORF1ab/nsp3	608	T608T	acC	acT	44	44	B	0.005624
ORF1ab/nsp3	608	T608T	acC	acT	43	43	B.1.177.31	0.494253
ORF1ab/nsp3	608	T608T	acC	acT	40	40	AY.26	0.001132
ORF1ab/nsp3	608	T608T	acC	acT	40	40	B.1.160.21	0.816327
ORF1ab/nsp3	608	T608T	acC	acT	39	39	B.1.177.44	0.020239
ORF1ab/nsp3	608	T608T	acC	acT	35	36	AY.120	0.001301
ORF1ab/nsp3	608	T608T	acC	acA	1	36	AY.120	0.000037
ORF1ab/nsp3	608	T608T	acC	acT	36	36	B.1.160.13	1
ORF1ab/nsp3	608	T608T	acC	acT	36	36	B.1.241	0.029221
ORF1ab/nsp3	608	T608T	acC	acT	35	35	B.1.177.86	0.006421
ORF1ab/nsp3	608	T608T	acC	acT	34	34	B.1.177.54	0.020619
ORF1ab/nsp3	608	T608T	acC	acT	33	33	AY.6	0.001357
ORF1ab/nsp3	608	T608T	acC	acT	32	32	AY.98.1	0.00155
ORF1ab/nsp3	608	T608del	ACC	---	31	31	B.1.1.7	0.000028
ORF1ab/nsp3	608	T608I	aCc	aTc	28	30	All	0.000005
ORF1ab/nsp3	608	T608I	aCC	aTT	2	30	All	0
ORF1ab/nsp3	608	T608T	acC	acT	29	29	AY.7	0.005684
ORF1ab/nsp3	608	T608T	acC	acT	29	29	B.1.243	0.002018
ORF1ab/nsp3	608	T608T	acC	acT	29	29	B.1.601	0.878788
ORF1ab/nsp3	608	T608T	acC	acT	28	28	B.1.160.19	1
ORF1ab/nsp3	608	T608T	acC	acT	26	26	B.1.1.420	0.026157
ORF1ab/nsp3	608	T608T	acC	acT	26	26	B.1.1.445	0.962963
ORF1ab/nsp3	608	T608T	acC	acT	26	26	B.1.177.57	0.007305
ORF1ab/nsp3	608	T608T	acC	acT	26	26	P.1.15	0.006041
ORF1ab/nsp3	608	T608N	aCc	aAc	25	25	B.1.1.7	0.000022
ORF1ab/nsp3	608	T608T	acC	acT	23	24	AY.117	0.001944
ORF1ab/nsp3	608	T608T	acC	acA	1	24	AY.117	0.000085
ORF1ab/nsp3	608	T608T	acC	acT	23	24	AY.39	0.000568
ORF1ab/nsp3	608	T608T	acC	acG	1	24	AY.39	0.000025
ORF1ab/nsp3	608	T608T	acC	acT	23	23	P.1.12	0.011133
ORF1ab/nsp3	608	T608T	acC	acT	22	22	B.1.177.60	0.004806
ORF1ab/nsp3	608	T608T	acC	acT	21	21	B.1.409	0.016406
ORF1ab/nsp3	608	T608S	Acc	Tcc	16	20	All	0.000003
ORF1ab/nsp3	608	T608S	aCc	aGc	3	20	All	0.000001
ORF1ab/nsp3	608	T608S	aCC	aGT	1	20	All	0
ORF1ab/nsp3	608	T608T	acC	acT	20	20	B.1.1.39	0.010194
ORF1ab/nsp3	608	T608T	acC	acT	20	20	B.1.258.11	0.007927
ORF1ab/nsp3	608	T608T	acC	acT	19	19	AY.46.6	0.001372
ORF1ab/nsp3	608	T608T	acC	acT	17	17	Q.1	0.002148
ORF1ab/nsp3	608	T608T	acC	acT	16	16	B.1.36.38	0.026273
ORF1ab/nsp3	608	T608T	acC	acT	15	15	B.1.575	0.004551
ORF1ab/nsp3	608	T608A	Acc	Gcc	14	14	All	0.000003
ORF1ab/nsp3	608	T608T	acC	acT	14	14	AY.119	0.000494
ORF1ab/nsp3	608	T608T	acC	acT	14	14	AY.23	0.000976
ORF1ab/nsp3	608	T608T	acC	acT	14	14	B.1.177.43	0.020679
ORF1ab/nsp3	608	T608T	acC	acT	14	14	B.1.234	0.001847
ORF1ab/nsp3	608	T608T	acC	acT	13	14	B.1.621	0.001151
ORF1ab/nsp3	608	T608T	acC	acA	1	14	B.1.621	0.000089
ORF1ab/nsp3	608	T608T	acC	acT	14	14	C.37	0.001625
ORF1ab/nsp3	608	T608T	acC	acT	12	13	B.1.258	0.000799
ORF1ab/nsp3	608	T608T	acC	acA	1	13	B.1.258	0.000067
ORF1ab/nsp3	608	T608T	acC	acT	13	13	B.1.36	0.001897
ORF1ab/nsp3	608	T608T	acC	acT	13	13	B.1.617.1	0.001677
ORF1ab/nsp3	608	T608T	acC	acT	12	12	AY.29	0.000189
ORF1ab/nsp3	608	T608T	acC	acT	12	12	AY.42	0.000483
ORF1ab/nsp3	608	T608T	acC	acT	12	12	B.1.1.28	0.003735
ORF1ab/nsp3	608	T608T	acC	acT	12	12	C.14	0.051948
ORF1ab/nsp3	608	T608T	acC	acT	11	11	AY.121	0.001488
ORF1ab/nsp3	608	T608T	acC	acT	6	11	B.1.509	0.005195
ORF1ab/nsp3	608	T608T	acC	acA	5	11	B.1.509	0.004329
ORF1ab/nsp3	608	T608T	acC	acT	10	10	AY.20	0.000389
ORF1ab/nsp3	608	T608T	acC	acT	10	10	B.1.1.222	0.00204
ORF1ab/nsp3	608	T608T	acC	acT	10	10	B.1.1.294	0.012658
ORF1ab/nsp3	608	T608T	acC	acT	10	10	B.1.177.4	0.002111
ORF1ab/nsp3	608	T608T	acC	acT	10	10	B.1.311	0.002746
ORF1ab/nsp3	608	T608T	acC	acT	10	10	B.1.438.1	0.001073
ORF1ab/nsp3	608	T608T	acC	acT	10	10	B.1.505	0.04386
ORF1ab/nsp3	608	T608T	acC	acT	10	10	B.1.525	0.001132
ORF1ab/nsp3	608	T608T	acC	acT	9	9	AY.94	0.003984
ORF1ab/nsp3	608	T608T	acC	acT	9	9	B.1.177.81	0.001704
ORF1ab/nsp3	608	T608N	aCc	aAc	9	9	B.1.362	0.013867
ORF1ab/nsp3	608	T608T	acC	acT	9	9	B.1.411	0.033333
ORF1ab/nsp3	608	T608T	acC	acT	9	9	Q.4	0.004093
ORF1ab/nsp3	608	T608T	acC	acT	9	9	R.1	0.00081
ORF1ab/nsp3	608	T608N	aCc	aAc	8	8	AY.20	0.000311
ORF1ab/nsp3	608	T608T	acC	acT	8	8	AY.34	0.000776
ORF1ab/nsp3	608	T608T	acC	acT	8	8	AY.46.4	0.001316
ORF1ab/nsp3	608	T608T	acC	acT	7	8	B.1.1.214	0.000388
ORF1ab/nsp3	608	T608T	acC	acA	1	8	B.1.1.214	0.000055
ORF1ab/nsp3	608	T608T	acC	acT	8	8	B.1.232	0.004299
ORF1ab/nsp3	608	T608N	aCc	aAc	8	8	B.1.617.2	0.00003
ORF1ab/nsp3	608	T608T	acC	acT	7	7	A	0.002709
ORF1ab/nsp3	608	T608T	acC	acT	7	7	AY.3.1	0.000597
ORF1ab/nsp3	608	T608T	acC	acT	7	7	AY.4.2	0.000152
ORF1ab/nsp3	608	T608N	aCc	aAc	7	7	AY.44	0.000043
ORF1ab/nsp3	608	T608T	acC	acT	7	7	AY.46	0.000729
ORF1ab/nsp3	608	T608T	acC	acT	7	7	AY.9.2	0.000257
ORF1ab/nsp3	608	T608T	acC	acT	7	7	AY.93	0.001912
ORF1ab/nsp3	608	T608del	ACC	---	7	7	B.1	0.000064
ORF1ab/nsp3	608	T608T	acC	acT	7	7	B.1.1.33	0.002946
ORF1ab/nsp3	608	T608T	acC	acT	7	7	B.1.177.73	0.003964
ORF1ab/nsp3	608	T608T	acC	acT	7	7	B.1.260	0.023411
ORF1ab/nsp3	608	T608T	acC	acT	7	7	P.1.1	0.002224
ORF1ab/nsp3	608	T608T	acC	acT	7	7	P.1.4	0.006836
ORF1ab/nsp3	608	T608T	acC	acT	6	6	AY.4.5	0.000645
ORF1ab/nsp3	608	T608T	acC	acT	6	6	AY.98	0.000474
ORF1ab/nsp3	608	T608T	acC	acT	6	6	B.1.1.306	0.00263
ORF1ab/nsp3	608	T608T	acC	acT	6	6	B.1.1.368	0.018519
ORF1ab/nsp3	608	T608T	acC	acT	6	6	B.1.1.70	0.002046
ORF1ab/nsp3	608	T608T	acC	acT	6	6	B.1.177.21	0.000459
ORF1ab/nsp3	608	T608T	acC	acT	6	6	P.1.14	0.000287
ORF1ab/nsp3	608	T608T	acC	acT	5	5	AY.10	0.00265
ORF1ab/nsp3	608	T608T	acC	acT	5	5	AY.14	0.00044
ORF1ab/nsp3	608	T608T	acC	acT	5	5	AY.24	0.002155
ORF1ab/nsp3	608	T608T	acC	acT	5	5	AY.32	0.002662
ORF1ab/nsp3	608	T608del	ACC	---	5	5	AY.4	0.000008
ORF1ab/nsp3	608	T608T	acC	acT	5	5	AY.45	0.000608
ORF1ab/nsp3	608	T608T	acC	acT	5	5	AY.52	0.004072
ORF1ab/nsp3	608	T608T	acC	acT	5	5	AY.99.2	0.000461
ORF1ab/nsp3	608	T608T	acC	acT	5	5	B.1.1.153	0.005476
ORF1ab/nsp3	608	T608T	acC	acT	5	5	B.1.1.63	0.001929
ORF1ab/nsp3	608	T608T	acC	acT	5	5	B.1.36.22	0.006039
ORF1ab/nsp3	608	T608T	acC	acT	5	5	B.1.389	0.00501
ORF1ab/nsp3	608	T608T	acC	acT	5	5	B.1.609	0.002397
ORF1ab/nsp3	608	T608del	ACC	---	5	5	B.1.617.2	0.000019
ORF1ab/nsp3	608	T608S	Acc	Tcc	5	5	B.1.617.2	0.000019
ORF1ab/nsp3	608	T608T	acC	acT	5	5	B.23	0.01462
ORF1ab/nsp3	608	T608T	acC	acT	5	5	B.6	0.00455
ORF1ab/nsp3	608	T608T	acC	acT	5	5	C.36.3	0.002836
ORF1ab/nsp3	608	T608N	aCc	aAc	4	4	AY.103	0.000025
ORF1ab/nsp3	608	T608N	aCc	aAc	4	4	AY.106	0.00134
ORF1ab/nsp3	608	T608T	acC	acT	4	4	AY.108	0.00441
ORF1ab/nsp3	608	T608T	acC	acT	4	4	AY.110	0.000451
ORF1ab/nsp3	608	T608T	acC	acT	4	4	AY.29.1	0.000882
ORF1ab/nsp3	608	T608S	Acc	Tcc	4	4	AY.43	0.000018
ORF1ab/nsp3	608	T608T	acC	acT	4	4	AY.61	0.000419
ORF1ab/nsp3	608	T608T	acC	acT	4	4	AY.92	0.001149
ORF1ab/nsp3	608	T608T	acC	acT	4	4	B.1.1.284	0.00043
ORF1ab/nsp3	608	T608T	acC	acT	4	4	B.1.1.328	0.067797
ORF1ab/nsp3	608	T608I	aCc	aTc	4	4	B.1.1.7	0.000004
ORF1ab/nsp3	608	T608del	ACC	---	4	4	B.1.177	0.000053
ORF1ab/nsp3	608	T608T	acC	acT	4	4	B.1.177.23	0.012945
ORF1ab/nsp3	608	T608A	Acc	Gcc	4	4	B.1.177.32	0.005398
ORF1ab/nsp3	608	T608del	ACC	---	4	4	B.1.2	0.000035
ORF1ab/nsp3	608	T608A	Acc	Gcc	4	4	B.1.2	0.000035
ORF1ab/nsp3	608	T608T	acC	acT	4	4	B.1.206	0.003263
ORF1ab/nsp3	608	T608T	acC	acT	4	4	B.1.222	0.006768
ORF1ab/nsp3	608	T608T	acC	acT	4	4	B.1.320	0.004981
ORF1ab/nsp3	608	T608T	acC	acT	4	4	B.1.36.8	0.004
ORF1ab/nsp3	608	T608T	acC	acT	4	4	B.1.469	0.01444
ORF1ab/nsp3	608	T608T	acC	acT	3	4	B.1.596	0.000261
ORF1ab/nsp3	608	T608T	acC	acA	1	4	B.1.596	0.000087
ORF1ab/nsp3	608	T608T	acC	acT	4	4	B.1.617.3	0.01194
ORF1ab/nsp3	608	T608T	acC	acT	4	4	B.1.620	0.003784
ORF1ab/nsp3	608	T608T	acC	acT	4	4	D.2	0.0003
ORF1ab/nsp3	608	T608T	acC	acT	4	4	P.1.7	0.001277
ORF1ab/nsp3	608	T608T	acC	acT	4	4	P.2	0.000747
ORF1ab/nsp3	608	T608T	acC	acT	3	3	A.1	0.000846
ORF1ab/nsp3	608	T608T	acC	acT	3	3	AY.13	0.000483
ORF1ab/nsp3	608	T608T	acC	acT	3	3	AY.27	0.000194
ORF1ab/nsp3	608	T608T	acC	acT	3	3	AY.38	0.001498
ORF1ab/nsp3	608	T608T	acC	acT	3	3	AY.39.1	0.000119
ORF1ab/nsp3	608	T608del	ACC	---	3	3	AY.42	0.000121
ORF1ab/nsp3	608	T608T	acC	acA	2	3	AY.5.3	0.000675
ORF1ab/nsp3	608	T608T	acC	acT	1	3	AY.5.3	0.000337
ORF1ab/nsp3	608	T608T	acC	acT	3	3	AY.75	0.000168
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.1.10	0.003344
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.1.207	0.003546
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.1.216	0.002671
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.1.409	0.008499
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.1.416	0.002715
ORF1ab/nsp3	608	T608del	ACC	---	3	3	B.1.1.519	0.000119
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.139	0.002199
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.157	0.008955
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.177.15	0.001893
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.177.8	0.002257
ORF1ab/nsp3	608	T608I	aCc	aTc	3	3	B.1.2	0.000026
ORF1ab/nsp3	608	T608N	aCc	aAc	3	3	B.1.2	0.000026
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.201	0.017045
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.239	0.003663
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.258.17	0.000312
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.36.29	0.001552
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.375	0.002459
ORF1ab/nsp3	608	T608N	aCc	aAc	3	3	B.1.427	0.000151
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.462	0.021739
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.468	0.017143
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.1.578	0.053571
ORF1ab/nsp3	608	T608del	ACC	---	3	3	B.1.596	0.000261
ORF1ab/nsp3	608	T608T	acC	acT	3	3	B.6.6	0.002667
ORF1ab/nsp3	608	T608T	acC	acT	3	3	Q.8	0.000495
ORF1ab/nsp3	608	T608T	acC	acT	2	2	A.2	0.001324
ORF1ab/nsp3	608	T608T	acC	acT	2	2	A.23.1	0.001408
ORF1ab/nsp3	608	T608H	ACc	CAc	2	2	All	0
ORF1ab/nsp3	608	T608K	aCC	aAA	2	2	All	0
ORF1ab/nsp3	608	T608Y	ACC	TAT	1	2	All	0
ORF1ab/nsp3	608	T608Y	ACc	TAc	1	2	All	0
ORF1ab/nsp3	608	T608del	ACC	---	2	2	AY.103	0.000012
ORF1ab/nsp3	608	T608T	acC	acT	2	2	AY.114	0.000462
ORF1ab/nsp3	608	T608T	acC	acT	2	2	AY.116	0.000574
ORF1ab/nsp3	608	T608T	acC	acT	2	2	AY.118	0.000125
ORF1ab/nsp3	608	T608N	aCc	aAc	2	2	AY.120	0.000074
ORF1ab/nsp3	608	T608T	acC	acA	1	2	AY.30	0.000396
ORF1ab/nsp3	608	T608T	acC	acT	1	2	AY.30	0.000396
ORF1ab/nsp3	608	T608T	acC	acT	2	2	AY.33	0.000134
ORF1ab/nsp3	608	T608T	acC	acT	2	2	AY.37	0.000632
ORF1ab/nsp3	608	T608del	ACC	---	2	2	AY.43	0.000009
ORF1ab/nsp3	608	T608T	acC	acT	2	2	AY.46.2	0.001271
ORF1ab/nsp3	608	T608N	aCc	aAc	2	2	AY.5	0.000041
ORF1ab/nsp3	608	T608del	ACC	---	2	2	AY.52	0.001629
ORF1ab/nsp3	608	T608T	acC	acT	2	2	AY.7.2	0.001119
ORF1ab/nsp3	608	T608T	acC	acT	2	2	AY.74	0.000231
ORF1ab/nsp3	608	T608T	acC	acT	2	2	AY.75.1	0.000361
ORF1ab/nsp3	608	T608T	acC	acT	2	2	AY.84	0.000875
ORF1ab/nsp3	608	T608Y	ACc	TAc	1	2	AY.85	0.000427
ORF1ab/nsp3	608	T608Y	ACC	TAT	1	2	AY.85	0.000427
ORF1ab/nsp3	608	T608N	aCC	aAT	1	2	AY.85	0.000427
ORF1ab/nsp3	608	T608N	aCc	aAc	1	2	AY.85	0.000427
ORF1ab/nsp3	608	T608del	ACC	---	2	2	AY.9.1	0.000167
ORF1ab/nsp3	608	T608N	aCc	aAc	2	2	AY.9.1	0.000167
ORF1ab/nsp3	608	T608T	acC	acA	1	2	AY.9.1	0.000084
ORF1ab/nsp3	608	T608T	acC	acT	1	2	AY.9.1	0.000084
ORF1ab/nsp3	608	T608I	aCc	aTc	2	2	B.1.1	0.000036
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.1.1	0.000653
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.1.141	0.004024
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.1.231	0.006192
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.1.241	0.004141
ORF1ab/nsp3	608	T608T	acC	acA	1	2	B.1.1.269	0.001353
ORF1ab/nsp3	608	T608T	acC	acT	1	2	B.1.1.269	0.001353
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.1.326	0.003521
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.1.466	0.017391
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.1.54	0.006042
ORF1ab/nsp3	608	T608del	ACC	---	2	2	B.1.160	0.000062
ORF1ab/nsp3	608	T608I	aCc	aTc	2	2	B.1.177	0.000026
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.177.12	0.000303
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.177.29	0.133333
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.177.82	0.000955
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.177.84	0.013333
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.210	0.004264
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.237	0.00995
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.36.10	0.009569
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.36.24	0.012346
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.378	0.013699
ORF1ab/nsp3	608	T608I	aCC	aTT	1	2	B.1.396	0.000706
ORF1ab/nsp3	608	T608I	aCc	aTc	1	2	B.1.396	0.000706
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.416.1	0.003125
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.428	0.002041
ORF1ab/nsp3	608	T608T	acC	acT	2	2	B.1.533	0.019231
ORF1ab/nsp3	608	T608I	aCc	aTc	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	608	T608K	aCC	aAA	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	608	T608del	ACC	---	2	2	P.1	0.000032
ORF1ab/nsp3	608	T608T	acC	acT	2	2	P.1.17	0.000324
ORF1ab/nsp3	608	T608T	acC	acT	2	2	P.1.2	0.002312
ORF1ab/nsp3	608	T608T	acC	acT	2	2	P.3	0.00319
ORF1ab/nsp3	608	T608del	ACC	---	1	1	A	0.000387
ORF1ab/nsp3	608	T608del	ACC	---	1	1	A.2.2	0.001689
ORF1ab/nsp3	608	T608S	Acc	Tcc	1	1	A.2.2	0.001689
ORF1ab/nsp3	608	T608T	acC	acT	1	1	A.2.2	0.001689
ORF1ab/nsp3	608	T608T	acC	acT	1	1	A.2.4	0.003367
ORF1ab/nsp3	608	T608T	acC	acT	1	1	A.6	0.005128
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AE.1	0.011364
ORF1ab/nsp3	608	T608R	aCC	aGA	1	1	All	0
ORF1ab/nsp3	608	T608M	aCC	aTG	1	1	All	0
ORF1ab/nsp3	608	T608del1	ACC	-NN	1	1	All	0
ORF1ab/nsp3	608	T608P	Acc	Ccc	1	1	All	0
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AN.1	0.02
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AP.1	0.001502
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AQ.1	0.071429
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AU.1	0.001266
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.1	0.000396
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.101	0.00049
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.101	0.00049
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	AY.103	0.000006
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.104	0.001984
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.105	0.000643
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.107	0.000466
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.113	0.000142
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.118	0.000063
ORF1ab/nsp3	608	T608S	Acc	Tcc	1	1	AY.12	0.000316
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.120.1	0.000321
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.120.2.1	0.000498
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.16.1	0.00047
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.17	0.008197
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.24	0.000431
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	AY.25	0.000006
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.25	0.000006
ORF1ab/nsp3	608	T608H	ACc	CAc	1	1	AY.26	0.000028
ORF1ab/nsp3	608	T608del	ACC	---	1	1	AY.3	0.00001
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.30	0.000396
ORF1ab/nsp3	608	T608S	aCc	aGc	1	1	AY.30	0.000396
ORF1ab/nsp3	608	T608R	aCC	aGA	1	1	AY.30	0.000396
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.34.1	0.00051
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.36	0.000148
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.39	0.000025
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.39.1	0.00004
ORF1ab/nsp3	608	T608A	Acc	Gcc	1	1	AY.39.2	0.001541
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	AY.4	0.000002
ORF1ab/nsp3	608	T608A	Acc	Gcc	1	1	AY.4	0.000002
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.4.3	0.000842
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.4.4	0.000409
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.41	0.000294
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.43	0.000004
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	AY.44	0.000006
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.45	0.000122
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.46.6	0.000072
ORF1ab/nsp3	608	T608del	ACC	---	1	1	AY.5	0.000021
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.5.1	0.003759
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.5.4	0.000277
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.54	0.000095
ORF1ab/nsp3	608	T608del	ACC	---	1	1	AY.54	0.000095
ORF1ab/nsp3	608	T608S	aCc	aGc	1	1	AY.6	0.000041
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.62	0.000436
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.63	0.000387
ORF1ab/nsp3	608	T608del	ACC	---	1	1	AY.67	0.000464
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.67	0.000464
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.77	0.001127
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.83	0.001724
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.85	0.000427
ORF1ab/nsp3	608	T608del	ACC	---	1	1	AY.9	0.000068
ORF1ab/nsp3	608	T608T	acC	acT	1	1	AY.9	0.000068
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.9.2	0.000037
ORF1ab/nsp3	608	T608S	aCc	aGc	1	1	AY.98	0.000079
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.98.1	0.000048
ORF1ab/nsp3	608	T608del	ACC	---	1	1	AY.99	0.001049
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	AY.99.2	0.000092
ORF1ab/nsp3	608	T608H	ACc	CAc	1	1	B	0.000128
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	B.1	0.000009
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	B.1	0.000009
ORF1ab/nsp3	608	T608M	aCC	aTG	1	1	B.1	0.000009
ORF1ab/nsp3	608	T608del1	ACC	-NN	1	1	B.1	0.000009
ORF1ab/nsp3	608	T608P	Acc	Ccc	1	1	B.1	0.000009
ORF1ab/nsp3	608	T608S	Acc	Tcc	1	1	B.1	0.000009
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.1	0.000018
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	B.1.1	0.000018
ORF1ab/nsp3	608	T608A	Acc	Gcc	1	1	B.1.1	0.000018
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.1.142	0.017544
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.161	0.003534
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.174	0.003378
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.181	0.004545
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.192	0.002309
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.220	0.001859
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.228	0.003049
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.236	0.006897
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.25	0.000569
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.265	0.003155
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.275	0.011236
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.298	0.000862
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.301	0.001179
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.307	0.002532
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.1.315	0.008475
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	B.1.1.317	0.000412
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.318	0.000302
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.343	0.020833
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.37	0.000193
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.372	0.000689
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.397	0.002252
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.432	0.001266
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	B.1.1.464	0.001473
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.523	0.001563
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.524	0.020833
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.525	0.005464
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.53	0.013699
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.58	0.005376
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.1.61	0.008772
ORF1ab/nsp3	608	T608A	Acc	Gcc	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	608	T608S	Acc	Tcc	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.120	0.007692
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.124	0.007812
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.126	0.001276
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.157	0.002985
ORF1ab/nsp3	608	T608S	aCC	aGT	1	1	B.1.160	0.000031
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.160.30	0.002976
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.177.17	0.000821
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.177.18	0.00116
ORF1ab/nsp3	608	T608S	Acc	Tcc	1	1	B.1.177.23	0.003236
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	B.1.177.35	0.000691
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.177.50	0.004695
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.177.51	0.004566
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.177.52	0.001757
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.177.56	0.000668
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	B.1.177.60	0.000218
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.177.63	0.002703
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.177.71	0.010101
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.177.76	0.002494
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.177.77	0.000726
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.177.87	0.000728
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.177.89	0.02439
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.177.9	0.001332
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.199	0.004132
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	B.1.210	0.002132
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.214.2	0.0006
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.221.2	0.004016
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.240	0.000216
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.258.4	0.003448
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.268	0.010417
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.279	0.000514
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.319	0.003049
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.326	0.007576
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	B.1.346	0.001311
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	B.1.351	0.00003
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	B.1.351.3	0.000876
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.36	0.000146
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.36.17	0.000494
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.36.31	0.001751
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.36.9	0.003215
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.361	0.001289
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	B.1.362.2	0.004717
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.396	0.000706
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.400	0.000429
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	B.1.404	0.001302
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.438	0.006536
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.448	0.002625
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.450	0.011364
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.456	0.003268
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.459	0.004082
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.460	0.017857
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.471	0.002732
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.474	0.001901
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.497	0.000315
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.516	0.001957
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.523	0.002451
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	B.1.525	0.000113
ORF1ab/nsp3	608	T608A	Acc	Gcc	1	1	B.1.526	0.000024
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.527	0.003704
ORF1ab/nsp3	608	T608T	acC	acA	1	1	B.1.537	0.02
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	B.1.558	0.004566
ORF1ab/nsp3	608	T608I	aCC	aTT	1	1	B.1.561	0.000397
ORF1ab/nsp3	608	T608S	Acc	Tcc	1	1	B.1.564	0.000426
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.564	0.000426
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.564.1	0.001577
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.567	0.003333
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.567	0.003333
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.576	0.000907
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.577	0.000687
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.590	0.004545
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.595	0.000261
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.599	0.00365
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.600	0.005848
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.609	0.000479
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.621	0.000089
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.623	0.000536
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.636	0.006711
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.1.637	0.000073
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.1.9.5	0.005682
ORF1ab/nsp3	608	T608del	ACC	---	1	1	B.15	0.017544
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.30	0.014706
ORF1ab/nsp3	608	T608S	Acc	Tcc	1	1	B.31	0.003731
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	B.39	0.002331
ORF1ab/nsp3	608	T608T	acC	acT	1	1	B.40	0.000364
ORF1ab/nsp3	608	T608A	Acc	Gcc	1	1	B.6.6	0.000889
ORF1ab/nsp3	608	T608T	acC	acT	1	1	C.35	0.000774
ORF1ab/nsp3	608	T608T	acC	acT	1	1	C.36.3.1	0.002717
ORF1ab/nsp3	608	T608T	acC	acT	1	1	C.4	0.01
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	D.2	0.000075
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	P.1	0.000016
ORF1ab/nsp3	608	T608del	ACC	---	1	1	P.1.4	0.000977
ORF1ab/nsp3	608	T608del	ACC	---	1	1	P.1.7	0.000319
ORF1ab/nsp3	608	T608T	acC	acT	1	1	P.1.9	0.004808
ORF1ab/nsp3	608	T608I	aCc	aTc	1	1	P.2	0.000187
ORF1ab/nsp3	608	T608T	acC	acT	1	1	P.7	0.004367
ORF1ab/nsp3	608	T608N	aCc	aAc	1	1	Q.1	0.000126
ORF1ab/nsp3	608	T608del	ACC	---	1	1	R.1	0.00009
ORF1ab/nsp3	608	T608T	acC	acT	1	1	Y.1	0.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.