CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 601

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3601G601CG1419CnonsynGgtTgt13013014520-4522
ORF1ab/nsp3601G601delG1419deldelGGT---767614520-4522
ORF1ab/nsp3601G601GG1419GsynggTggC49420.8571434520-4522
ORF1ab/nsp3601G601GG1419GsynggTggA4940.08163274520-4522
ORF1ab/nsp3601G601GG1419GsynggTggG4930.06122454520-4522
ORF1ab/nsp3601G601VG1419VnonsyngGtgTt393914520-4522
ORF1ab/nsp3601G601DG1419DnonsyngGtgAt242414520-4522
ORF1ab/nsp3601G601SG1419SnonsynGgtAgt212114520-4522
ORF1ab/nsp3601G601RG1419RnonsynGgtCgt320.6666674520-4522
ORF1ab/nsp3601G601RG1419RnonsynGgTAgA310.3333334520-4522
ORF1ab/nsp3601G601AG1419AnonsyngGTgCA210.54520-4522
ORF1ab/nsp3601G601AG1419AnonsyngGtgCt210.54520-4522
ORF1ab/nsp3601G601del2G1419del2delGGt--t1114520-4522
ORF1ab/nsp3601G601EG1419EnonsyngGTgAA1114520-4522
ORF1ab/nsp3601G601del1G1419del1delGgt-gt1114520-4522

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3601G601CGgtTgt130130All0.000025
ORF1ab/nsp3601G601CGgtTgt9696B.1.4230.979592
ORF1ab/nsp3601G601delGGT---7676All0.000015
ORF1ab/nsp3601G601GggTggC4249All0.000008
ORF1ab/nsp3601G601GggTggA449All0.000001
ORF1ab/nsp3601G601GggTggG349All0.000001
ORF1ab/nsp3601G601VgGtgTt3939All0.000007
ORF1ab/nsp3601G601delGGT---2626B.1.1.70.000023
ORF1ab/nsp3601G601DgGtgAt2424All0.000005
ORF1ab/nsp3601G601SGgtAgt2121All0.000004
ORF1ab/nsp3601G601VgGtgTt1414B.10.000128
ORF1ab/nsp3601G601DgGtgAt1313B.1.1.70.000012
ORF1ab/nsp3601G601GggTggC1111B.1.258.170.001144
ORF1ab/nsp3601G601VgGtgTt99AY.440.000055
ORF1ab/nsp3601G601CGgtTgt77Q.10.000884
ORF1ab/nsp3601G601delGGT---55AY.40.000008
ORF1ab/nsp3601G601CGgtTgt55B.10.000046
ORF1ab/nsp3601G601SGgtAgt55B.1.1.70.000004
ORF1ab/nsp3601G601GggTggC55B.1.1.70.000004
ORF1ab/nsp3601G601VgGtgTt44AY.430.000018
ORF1ab/nsp3601G601delGGT---44B.1.1770.000053
ORF1ab/nsp3601G601RGgtCgt23All0
ORF1ab/nsp3601G601RGgTAgA13All0
ORF1ab/nsp3601G601GggTggC33AY.40.000005
ORF1ab/nsp3601G601delGGT---33B.10.000027
ORF1ab/nsp3601G601GggTggC23B.10.000018
ORF1ab/nsp3601G601GggTggA13B.10.000009
ORF1ab/nsp3601G601delGGT---22A0.000774
ORF1ab/nsp3601G601AgGtgCt12All0
ORF1ab/nsp3601G601AgGTgCA12All0
ORF1ab/nsp3601G601GggTggC22AY.1020.000053
ORF1ab/nsp3601G601CGgtTgt22AY.200.000078
ORF1ab/nsp3601G601VgGtgTt22AY.40.000003
ORF1ab/nsp3601G601SGgtAgt22AY.40.000003
ORF1ab/nsp3601G601delGGT---22AY.420.00008
ORF1ab/nsp3601G601delGGT---22AY.430.000009
ORF1ab/nsp3601G601delGGT---22AY.9.10.000167
ORF1ab/nsp3601G601CGgtTgt22B0.000256
ORF1ab/nsp3601G601SGgtAgt22B0.000256
ORF1ab/nsp3601G601delGGT---22B.1.1.5190.000079
ORF1ab/nsp3601G601GggTggC22B.1.177.790.004684
ORF1ab/nsp3601G601SGgtAgt22B.1.20.000018
ORF1ab/nsp3601G601VgGtgTt22B.1.4330.00639
ORF1ab/nsp3601G601SGgtAgt22B.1.617.20.000008
ORF1ab/nsp3601G601GggTggC12B.1.617.20.000004
ORF1ab/nsp3601G601GggTggG12B.1.617.20.000004
ORF1ab/nsp3601G601GggTggC12D.20.000075
ORF1ab/nsp3601G601GggTggA12D.20.000075
ORF1ab/nsp3601G601delGGT---22P.10.000032
ORF1ab/nsp3601G601delGGT---11A.2.20.001689
ORF1ab/nsp3601G601GggTggC11A.2.40.003367
ORF1ab/nsp3601G601del2GGt--t11All0
ORF1ab/nsp3601G601EgGTgAA11All0
ORF1ab/nsp3601G601del1Ggt-gt11All0
ORF1ab/nsp3601G601VgGtgTt11AY.1030.000006
ORF1ab/nsp3601G601CGgtTgt11AY.1030.000006
ORF1ab/nsp3601G601DgGtgAt11AY.1030.000006
ORF1ab/nsp3601G601GggTggG11AY.1030.000006
ORF1ab/nsp3601G601delGGT---11AY.1190.000035
ORF1ab/nsp3601G601SGgtAgt11AY.200.000039
ORF1ab/nsp3601G601GggTggC11AY.230.00007
ORF1ab/nsp3601G601DgGtgAt11AY.250.000006
ORF1ab/nsp3601G601GggTggC11AY.250.000006
ORF1ab/nsp3601G601CGgtTgt11AY.330.000067
ORF1ab/nsp3601G601VgGtgTt11AY.390.000025
ORF1ab/nsp3601G601GggTggC11AY.39.10.00004
ORF1ab/nsp3601G601GggTggA11AY.39.20.001541
ORF1ab/nsp3601G601GggTggC11AY.420.00004
ORF1ab/nsp3601G601VgGtgTt11AY.420.00004
ORF1ab/nsp3601G601CGgtTgt11AY.430.000004
ORF1ab/nsp3601G601EgGTgAA11AY.440.000006
ORF1ab/nsp3601G601AgGTgCA11AY.440.000006
ORF1ab/nsp3601G601DgGtgAt11AY.440.000006
ORF1ab/nsp3601G601CGgtTgt11AY.440.000006
ORF1ab/nsp3601G601GggTggC11AY.440.000006
ORF1ab/nsp3601G601GggTggC11AY.450.000122
ORF1ab/nsp3601G601SGgtAgt11AY.46.60.000072
ORF1ab/nsp3601G601DgGtgAt11AY.470.000031
ORF1ab/nsp3601G601delGGT---11AY.520.000814
ORF1ab/nsp3601G601CGgtTgt11AY.520.000814
ORF1ab/nsp3601G601CGgtTgt11AY.590.00053
ORF1ab/nsp3601G601GggTggC11AY.620.000436
ORF1ab/nsp3601G601delGGT---11AY.670.000464
ORF1ab/nsp3601G601delGGT---11AY.710.000475
ORF1ab/nsp3601G601CGgtTgt11AY.850.000427
ORF1ab/nsp3601G601DgGtgAt11AY.90.000068
ORF1ab/nsp3601G601DgGtgAt11AY.9.20.000037
ORF1ab/nsp3601G601delGGT---11AY.950.000761
ORF1ab/nsp3601G601delGGT---11AY.990.001049
ORF1ab/nsp3601G601DgGtgAt11B.10.000009
ORF1ab/nsp3601G601DgGtgAt11B.1.10.000018
ORF1ab/nsp3601G601delGGT---11B.1.10.000018
ORF1ab/nsp3601G601SGgtAgt11B.1.10.000018
ORF1ab/nsp3601G601CGgtTgt11B.1.10.000018
ORF1ab/nsp3601G601GggTggC11B.1.10.000018
ORF1ab/nsp3601G601delGGT---11B.1.1.1420.017544
ORF1ab/nsp3601G601VgGtgTt11B.1.1.1580.012195
ORF1ab/nsp3601G601delGGT---11B.1.1.1700.001247
ORF1ab/nsp3601G601SGgtAgt11B.1.1.1720.018182
ORF1ab/nsp3601G601CGgtTgt11B.1.1.2100.005714
ORF1ab/nsp3601G601GggTggC11B.1.1.2580.003257
ORF1ab/nsp3601G601delGGT---11B.1.1.3150.008475
ORF1ab/nsp3601G601GggTggC11B.1.1.3720.000689
ORF1ab/nsp3601G601CGgtTgt11B.1.1.390.00051
ORF1ab/nsp3601G601delGGT---11B.1.1.4090.002833
ORF1ab/nsp3601G601GggTggC11B.1.1.5190.00004
ORF1ab/nsp3601G601VgGtgTt11B.1.1.70.000001
ORF1ab/nsp3601G601del2GGt--t11B.1.1.70.000001
ORF1ab/nsp3601G601RGgtCgt11B.1.1.70.000001
ORF1ab/nsp3601G601del1Ggt-gt11B.1.1.70.000001
ORF1ab/nsp3601G601CGgtTgt11B.1.1.70.000001
ORF1ab/nsp3601G601delGGT---11B.1.1570.002985
ORF1ab/nsp3601G601CGgtTgt11B.1.1770.000013
ORF1ab/nsp3601G601SGgtAgt11B.1.1770.000013
ORF1ab/nsp3601G601VgGtgTt11B.1.1770.000013
ORF1ab/nsp3601G601GggTggC11B.1.177.210.000076
ORF1ab/nsp3601G601CGgtTgt11B.1.177.40.000211
ORF1ab/nsp3601G601delGGT---11B.1.177.510.004566
ORF1ab/nsp3601G601GggTggA11B.1.177.600.000218
ORF1ab/nsp3601G601delGGT---11B.1.177.630.002703
ORF1ab/nsp3601G601delGGT---11B.1.177.870.000728
ORF1ab/nsp3601G601delGGT---11B.1.20.000009
ORF1ab/nsp3601G601GggTggC11B.1.20.000009
ORF1ab/nsp3601G601DgGtgAt11B.1.20.000009
ORF1ab/nsp3601G601AgGtgCt11B.1.20.000009
ORF1ab/nsp3601G601VgGtgTt11B.1.20.000009
ORF1ab/nsp3601G601DgGtgAt11B.1.2340.000132
ORF1ab/nsp3601G601CGgtTgt11B.1.2430.00007
ORF1ab/nsp3601G601delGGT---11B.1.2580.000067
ORF1ab/nsp3601G601CGgtTgt11B.1.3010.005917
ORF1ab/nsp3601G601delGGT---11B.1.3190.003049
ORF1ab/nsp3601G601GggTggG11B.1.3560.001727
ORF1ab/nsp3601G601delGGT---11B.1.360.000146
ORF1ab/nsp3601G601delGGT---11B.1.36.170.000494
ORF1ab/nsp3601G601CGgtTgt11B.1.3700.008
ORF1ab/nsp3601G601SGgtAgt11B.1.3770.004566
ORF1ab/nsp3601G601SGgtAgt11B.1.4270.00005
ORF1ab/nsp3601G601DgGtgAt11B.1.4290.000024
ORF1ab/nsp3601G601VgGtgTt11B.1.617.20.000004
ORF1ab/nsp3601G601RGgtCgt11B.1.617.20.000004
ORF1ab/nsp3601G601CGgtTgt11B.1.617.20.000004
ORF1ab/nsp3601G601delGGT---11B.1.617.20.000004
ORF1ab/nsp3601G601delGGT---11B.1.6210.000089
ORF1ab/nsp3601G601CGgtTgt11B.1.6230.000536
ORF1ab/nsp3601G601delGGT---11B.150.017544
ORF1ab/nsp3601G601RGgTAgA11B.4.40.018868
ORF1ab/nsp3601G601SGgtAgt11D.20.000075
ORF1ab/nsp3601G601GggTggC11P.1.130.000898
ORF1ab/nsp3601G601delGGT---11P.1.40.000977
ORF1ab/nsp3601G601delGGT---11R.10.00009