CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 595 | E595D | E1413D | nonsyn | gaG | gaT | 4733 | 4714 | 0.995986 | 4502-4504 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 4714 | 4733 | All | 0.000902 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1012 | 1016 | AY.4 | 0.001575 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 819 | 819 | AY.44 | 0.004985 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 474 | 478 | B.1.1.7 | 0.000424 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 339 | 339 | AY.46 | 0.035283 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 303 | 304 | P.1 | 0.004773 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 249 | 249 | B.1.221.2 | 1 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 193 | 195 | B.1.617.2 | 0.000727 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 178 | 179 | AY.43 | 0.000789 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 75 | 75 | AY.65 | 0.039979 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 61 | 61 | AY.113 | 0.008686 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 56 | 56 | AY.25 | 0.000337 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 55 | 55 | B.1.2 | 0.000484 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 47 | 47 | AY.103 | 0.000292 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 45 | 45 | AY.102 | 0.001193 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 33 | 34 | B.1 | 0.000302 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 33 | 33 | A.2.5 | 0.016467 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 32 | 32 | AY.5.4 | 0.008854 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 28 | 28 | Q.3 | 0.004061 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 23 | 23 | B.1.1.214 | 0.001276 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 23 | 23 | B.1.160 | 0.000717 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 22 | 22 | B.1.1.416 | 0.01991 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 22 | 22 | B.1.177 | 0.00029 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 21 | 21 | AY.23 | 0.001465 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 17 | 17 | P.4 | 0.064639 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 14 | 14 | P.1.16 | 0.005238 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 14 | 14 | Q.8 | 0.002309 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 11 | 11 | B.1.240 | 0.002371 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 11 | 11 | B.1.36 | 0.001605 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 10 | 10 | AY.74 | 0.001156 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 10 | 10 | P.1.12 | 0.00484 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 9 | 9 | AE.8 | 0.004401 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 7 | 8 | AY.6 | 0.000288 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 8 | 8 | AY.72 | 0.010884 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 8 | 8 | B.1.605 | 0.047619 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 7 | 7 | AY.46.5 | 0.001389 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 7 | 7 | B.1.1.528 | 0.033654 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 6 | 6 | AY.84 | 0.002625 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 6 | 6 | P.1.13 | 0.005391 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 6 | 6 | P.1.15 | 0.001394 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 5 | A | 0.000774 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 5 | 5 | AY.70 | 0.001043 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 5 | 5 | B.1.252 | 0.033113 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 5 | 5 | B.1.562 | 0.092593 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 4 | 4 | B.1.1.279 | 0.004484 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 4 | 4 | B.1.258.4 | 0.013793 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 4 | 4 | C.35 | 0.003096 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | A.19 | 0.028302 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | AY.120.2.1 | 0.001495 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | AY.15 | 0.006667 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | B.1.1.164 | 0.015464 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | N.3 | 0.017442 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 2 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | B.23 | 0.005848 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.1.224 | 0.014286 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.151 | 0.011111 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.532 | 0.006211 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | B.27 | 0.015385 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 595 | E595D | gaG | gaT | 1 | 1 | P.2 | 0.000187 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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