CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 595 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3595E595DE1413DnonsyngaGgaT473347140.9959864502-4504

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3595E595DgaGgaT47144733All0.000902
ORF1ab/nsp3595E595DgaGgaT10121016AY.40.001575
ORF1ab/nsp3595E595DgaGgaT819819AY.440.004985
ORF1ab/nsp3595E595DgaGgaT474478B.1.1.70.000424
ORF1ab/nsp3595E595DgaGgaT339339AY.460.035283
ORF1ab/nsp3595E595DgaGgaT303304P.10.004773
ORF1ab/nsp3595E595DgaGgaT249249B.1.221.21
ORF1ab/nsp3595E595DgaGgaT193195B.1.617.20.000727
ORF1ab/nsp3595E595DgaGgaT178179AY.430.000789
ORF1ab/nsp3595E595DgaGgaT7575AY.650.039979
ORF1ab/nsp3595E595DgaGgaT6161AY.1130.008686
ORF1ab/nsp3595E595DgaGgaT5656AY.250.000337
ORF1ab/nsp3595E595DgaGgaT5555B.1.20.000484
ORF1ab/nsp3595E595DgaGgaT4747AY.1030.000292
ORF1ab/nsp3595E595DgaGgaT4545AY.1020.001193
ORF1ab/nsp3595E595DgaGgaT3334B.10.000302
ORF1ab/nsp3595E595DgaGgaT3333A.2.50.016467
ORF1ab/nsp3595E595DgaGgaT3232AY.5.40.008854
ORF1ab/nsp3595E595DgaGgaT2929AY.30.000288
ORF1ab/nsp3595E595DgaGgaT2828Q.30.004061
ORF1ab/nsp3595E595DgaGgaT2323B.1.1.2140.001276
ORF1ab/nsp3595E595DgaGgaT2323B.1.1600.000717
ORF1ab/nsp3595E595DgaGgaT2222B.1.1.4160.01991
ORF1ab/nsp3595E595DgaGgaT2222B.1.1770.00029
ORF1ab/nsp3595E595DgaGgaT2121AY.230.001465
ORF1ab/nsp3595E595DgaGgaT2020B.1.4290.000471
ORF1ab/nsp3595E595DgaGgaT1717P.40.064639
ORF1ab/nsp3595E595DgaGgaT1515AY.420.000603
ORF1ab/nsp3595E595DgaGgaT1414P.1.160.005238
ORF1ab/nsp3595E595DgaGgaT1414Q.80.002309
ORF1ab/nsp3595E595DgaGgaT1313AY.390.000321
ORF1ab/nsp3595E595DgaGgaT1111B.1.2400.002371
ORF1ab/nsp3595E595DgaGgaT1111B.1.360.001605
ORF1ab/nsp3595E595DgaGgaT1010AY.1200.000372
ORF1ab/nsp3595E595DgaGgaT1010AY.740.001156
ORF1ab/nsp3595E595DgaGgaT1010P.1.120.00484
ORF1ab/nsp3595E595DgaGgaT99AE.80.004401
ORF1ab/nsp3595E595DgaGgaT99AY.260.000255
ORF1ab/nsp3595E595DgaGgaT99AY.330.000601
ORF1ab/nsp3595E595DgaGgaT99B.1.10.000163
ORF1ab/nsp3595E595DgaGgaT78AY.60.000288
ORF1ab/nsp3595E595DgaGgaT88AY.720.010884
ORF1ab/nsp3595E595DgaGgaT88B.1.3510.000238
ORF1ab/nsp3595E595DgaGgaT88B.1.6050.047619
ORF1ab/nsp3595E595DgaGgaT77AY.4.20.000152
ORF1ab/nsp3595E595DgaGgaT77AY.46.50.001389
ORF1ab/nsp3595E595DgaGgaT77AY.610.000733
ORF1ab/nsp3595E595DgaGgaT77AY.980.000553
ORF1ab/nsp3595E595DgaGgaT77B.1.1.5280.033654
ORF1ab/nsp3595E595DgaGgaT77B.1.617.10.000903
ORF1ab/nsp3595E595DgaGgaT66AY.840.002625
ORF1ab/nsp3595E595DgaGgaT66B.1.2210.000426
ORF1ab/nsp3595E595DgaGgaT66B.1.2340.000792
ORF1ab/nsp3595E595DgaGgaT66B.1.6370.000438
ORF1ab/nsp3595E595DgaGgaT66P.1.130.005391
ORF1ab/nsp3595E595DgaGgaT66P.1.150.001394
ORF1ab/nsp3595E595DgaGgaT25A0.000774
ORF1ab/nsp3595E595DgaGgaT55AY.1180.000313
ORF1ab/nsp3595E595DgaGgaT55AY.1210.000677
ORF1ab/nsp3595E595DgaGgaT55AY.200.000194
ORF1ab/nsp3595E595DgaGgaT55AY.270.000324
ORF1ab/nsp3595E595DgaGgaT55AY.700.001043
ORF1ab/nsp3595E595DgaGgaT55AY.920.001436
ORF1ab/nsp3595E595DgaGgaT55B.1.2520.033113
ORF1ab/nsp3595E595DgaGgaT55B.1.5260.000118
ORF1ab/nsp3595E595DgaGgaT55B.1.5620.092593
ORF1ab/nsp3595E595DgaGgaT44AY.1190.000141
ORF1ab/nsp3595E595DgaGgaT44AY.290.000063
ORF1ab/nsp3595E595DgaGgaT44AY.360.000593
ORF1ab/nsp3595E595DgaGgaT44AY.750.000224
ORF1ab/nsp3595E595DgaGgaT44B.1.1.2790.004484
ORF1ab/nsp3595E595DgaGgaT44B.1.1.3060.001754
ORF1ab/nsp3595E595DgaGgaT44B.1.1.3180.001207
ORF1ab/nsp3595E595DgaGgaT44B.1.258.40.013793
ORF1ab/nsp3595E595DgaGgaT44B.1.5750.001214
ORF1ab/nsp3595E595DgaGgaT44C.350.003096
ORF1ab/nsp3595E595DgaGgaT44P.1.10.001271
ORF1ab/nsp3595E595DgaGgaT33A.190.028302
ORF1ab/nsp3595E595DgaGgaT33AY.1000.000138
ORF1ab/nsp3595E595DgaGgaT33AY.1170.000254
ORF1ab/nsp3595E595DgaGgaT33AY.120.2.10.001495
ORF1ab/nsp3595E595DgaGgaT33AY.150.006667
ORF1ab/nsp3595E595DgaGgaT33AY.340.000291
ORF1ab/nsp3595E595DgaGgaT33AY.380.001498
ORF1ab/nsp3595E595DgaGgaT33AY.450.000365
ORF1ab/nsp3595E595DgaGgaT33AY.470.000093
ORF1ab/nsp3595E595DgaGgaT33B.1.1.1640.015464
ORF1ab/nsp3595E595DgaGgaT33B.1.1.2940.003797
ORF1ab/nsp3595E595DgaGgaT33B.1.1.370.000579
ORF1ab/nsp3595E595DgaGgaT33B.1.1.5190.000119
ORF1ab/nsp3595E595DgaGgaT33B.1.36.80.003
ORF1ab/nsp3595E595DgaGgaT33B.1.466.20.001174
ORF1ab/nsp3595E595DgaGgaT33B.1.5250.000339
ORF1ab/nsp3595E595DgaGgaT33B.1.621.10.001517
ORF1ab/nsp3595E595DgaGgaT33N.30.017442
ORF1ab/nsp3595E595DgaGgaT33P.1.140.000143
ORF1ab/nsp3595E595DgaGgaT33P.1.170.000485
ORF1ab/nsp3595E595DgaGgaT22AY.300.000791
ORF1ab/nsp3595E595DgaGgaT22AY.46.60.000144
ORF1ab/nsp3595E595DgaGgaT22AY.50.000041
ORF1ab/nsp3595E595DgaGgaT22AY.5.30.000675
ORF1ab/nsp3595E595DgaGgaT22AY.590.001059
ORF1ab/nsp3595E595DgaGgaT22AY.90.000135
ORF1ab/nsp3595E595DgaGgaT12B.1.1.280.000311
ORF1ab/nsp3595E595DgaGgaT22B.1.1.3480.001592
ORF1ab/nsp3595E595DgaGgaT22B.1.1.3720.001377
ORF1ab/nsp3595E595DgaGgaT22B.1.177.60.001953
ORF1ab/nsp3595E595DgaGgaT22B.1.2580.000133
ORF1ab/nsp3595E595DgaGgaT22B.1.4560.006536
ORF1ab/nsp3595E595DgaGgaT22B.1.4700.002809
ORF1ab/nsp3595E595DgaGgaT22B.1.5960.000174
ORF1ab/nsp3595E595DgaGgaT22B.230.005848
ORF1ab/nsp3595E595DgaGgaT22B.60.00182
ORF1ab/nsp3595E595DgaGgaT11A.2.20.001689
ORF1ab/nsp3595E595DgaGgaT11AU.20.002421
ORF1ab/nsp3595E595DgaGgaT11AY.1060.000335
ORF1ab/nsp3595E595DgaGgaT11AY.1070.000466
ORF1ab/nsp3595E595DgaGgaT11AY.1080.001103
ORF1ab/nsp3595E595DgaGgaT11AY.1140.000231
ORF1ab/nsp3595E595DgaGgaT11AY.3.10.000085
ORF1ab/nsp3595E595DgaGgaT11AY.34.10.00051
ORF1ab/nsp3595E595DgaGgaT11AY.370.000316
ORF1ab/nsp3595E595DgaGgaT11AY.39.10.00004
ORF1ab/nsp3595E595DgaGgaT11AY.4.2.10.000149
ORF1ab/nsp3595E595DgaGgaT11AY.400.000964
ORF1ab/nsp3595E595DgaGgaT11AY.480.000465
ORF1ab/nsp3595E595DgaGgaT11AY.5.20.002463
ORF1ab/nsp3595E595DgaGgaT11AY.580.000907
ORF1ab/nsp3595E595DgaGgaT11AY.690.000187
ORF1ab/nsp3595E595DgaGgaT11AY.70.000196
ORF1ab/nsp3595E595DgaGgaT11AY.7.10.000113
ORF1ab/nsp3595E595DgaGgaT11AY.730.000665
ORF1ab/nsp3595E595DgaGgaT11AY.75.10.00018
ORF1ab/nsp3595E595DgaGgaT11AY.770.001127
ORF1ab/nsp3595E595DgaGgaT11AY.800.001129
ORF1ab/nsp3595E595DgaGgaT11AY.9.10.000084
ORF1ab/nsp3595E595DgaGgaT11AY.9.20.000037
ORF1ab/nsp3595E595DgaGgaT11AY.940.000443
ORF1ab/nsp3595E595DgaGgaT11AY.98.10.000048
ORF1ab/nsp3595E595DgaGgaT11B0.000128
ORF1ab/nsp3595E595DgaGgaT11B.1.1.10.000327
ORF1ab/nsp3595E595DgaGgaT11B.1.1.1530.001095
ORF1ab/nsp3595E595DgaGgaT11B.1.1.1920.002309
ORF1ab/nsp3595E595DgaGgaT11B.1.1.1960.005714
ORF1ab/nsp3595E595DgaGgaT11B.1.1.2220.000204
ORF1ab/nsp3595E595DgaGgaT11B.1.1.2240.014286
ORF1ab/nsp3595E595DgaGgaT11B.1.1.3170.000412
ORF1ab/nsp3595E595DgaGgaT11B.1.1.3890.006061
ORF1ab/nsp3595E595DgaGgaT11B.1.1.4640.001473
ORF1ab/nsp3595E595DgaGgaT11B.1.1.5230.001563
ORF1ab/nsp3595E595DgaGgaT11B.1.1510.011111
ORF1ab/nsp3595E595DgaGgaT11B.1.160.160.000929
ORF1ab/nsp3595E595DgaGgaT11B.1.160.260.002421
ORF1ab/nsp3595E595DgaGgaT11B.1.177.70.000165
ORF1ab/nsp3595E595DgaGgaT11B.1.177.860.000183
ORF1ab/nsp3595E595DgaGgaT11B.1.177.90.001332
ORF1ab/nsp3595E595DgaGgaT11B.1.1890.004292
ORF1ab/nsp3595E595DgaGgaT11B.1.2430.00007
ORF1ab/nsp3595E595DgaGgaT11B.1.258.70.001912
ORF1ab/nsp3595E595DgaGgaT11B.1.36.220.001208
ORF1ab/nsp3595E595DgaGgaT11B.1.36.310.001751
ORF1ab/nsp3595E595DgaGgaT11B.1.4270.00005
ORF1ab/nsp3595E595DgaGgaT11B.1.438.10.000107
ORF1ab/nsp3595E595DgaGgaT11B.1.4430.004673
ORF1ab/nsp3595E595DgaGgaT11B.1.4530.003236
ORF1ab/nsp3595E595DgaGgaT11B.1.4590.004082
ORF1ab/nsp3595E595DgaGgaT11B.1.5320.006211
ORF1ab/nsp3595E595DgaGgaT11B.1.5440.006024
ORF1ab/nsp3595E595DgaGgaT11B.1.5610.000397
ORF1ab/nsp3595E595DgaGgaT11B.1.5870.001898
ORF1ab/nsp3595E595DgaGgaT11B.1.5880.00091
ORF1ab/nsp3595E595DgaGgaT11B.1.5990.00365
ORF1ab/nsp3595E595DgaGgaT11B.1.6000.005848
ORF1ab/nsp3595E595DgaGgaT11B.1.6090.000479
ORF1ab/nsp3595E595DgaGgaT11B.1.9.50.005682
ORF1ab/nsp3595E595DgaGgaT11B.270.015385
ORF1ab/nsp3595E595DgaGgaT11C.10.002392
ORF1ab/nsp3595E595DgaGgaT11C.36.30.000567
ORF1ab/nsp3595E595DgaGgaT11N.50.001767
ORF1ab/nsp3595E595DgaGgaT11P.1.110.010204
ORF1ab/nsp3595E595DgaGgaT11P.1.20.001156
ORF1ab/nsp3595E595DgaGgaT11P.1.70.000319
ORF1ab/nsp3595E595DgaGgaT11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.