CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 58

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp358A58TA876TnonsynGcaAca255125490.9992162891-2893
ORF1ab/nsp358A58TA876TnonsynGcAAcT255120.0007840062891-2893
ORF1ab/nsp358A58VA876VnonsyngCagTa1461146112891-2893
ORF1ab/nsp358A58AA876AsyngcAgcG4362400.5504592891-2893
ORF1ab/nsp358A58AA876AsyngcAgcT4361630.3738532891-2893
ORF1ab/nsp358A58AA876AsyngcAgcC436330.07568812891-2893
ORF1ab/nsp358A58SA876SnonsynGcaTca34134112891-2893
ORF1ab/nsp358A58delA876deldelGCA---242412891-2893
ORF1ab/nsp358A58EA876EnonsyngCagAa6612891-2893
ORF1ab/nsp358A58PA876PnonsynGcaCca4412891-2893
ORF1ab/nsp358A58GA876GnonsyngCagGa430.752891-2893
ORF1ab/nsp358A58GA876GnonsyngCAgGT410.252891-2893
ORF1ab/nsp358A58IA876InonsynGCaATa1112891-2893
ORF1ab/nsp358A58del1A876del1delgCag-a1112891-2893

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp358A58TGcaAca25492551All0.000488
ORF1ab/nsp358A58TGcAAcT22551All0
ORF1ab/nsp358A58VgCagTa14611461All0.000279
ORF1ab/nsp358A58TGcaAca11821182B.30.981728
ORF1ab/nsp358A58VgCagTa10781078AY.250.006484
ORF1ab/nsp358A58TGcaAca599599B.3.10.993367
ORF1ab/nsp358A58AgcAgcG240436All0.000046
ORF1ab/nsp358A58AgcAgcT163436All0.000031
ORF1ab/nsp358A58AgcAgcC33436All0.000006
ORF1ab/nsp358A58SGcaTca341341All0.000065
ORF1ab/nsp358A58TGcaAca132132AY.4.10.097345
ORF1ab/nsp358A58SGcaTca129129AY.430.000572
ORF1ab/nsp358A58TGcaAca117117B.1.4680.668571
ORF1ab/nsp358A58TGcaAca113113AY.250.00068
ORF1ab/nsp358A58VgCagTa6868AY.40.000106
ORF1ab/nsp358A58AgcAgcG4453AY.440.000268
ORF1ab/nsp358A58AgcAgcT753AY.440.000043
ORF1ab/nsp358A58AgcAgcC253AY.440.000012
ORF1ab/nsp358A58AgcAgcG4152B.1.1.70.000037
ORF1ab/nsp358A58AgcAgcT852B.1.1.70.000007
ORF1ab/nsp358A58AgcAgcC352B.1.1.70.000003
ORF1ab/nsp358A58SGcaTca4848B.1.617.20.000181
ORF1ab/nsp358A58VgCagTa4848P.10.000756
ORF1ab/nsp358A58VgCagTa4343B.1.221.30.035833
ORF1ab/nsp358A58TGcaAca4242AY.430.000186
ORF1ab/nsp358A58TGcaAca3939AY.1030.000242
ORF1ab/nsp358A58TGcaAca3838B.1.1.70.000034
ORF1ab/nsp358A58TGcaAca3737AY.40.000058
ORF1ab/nsp358A58TGcaAca3737B.1.617.20.000139
ORF1ab/nsp358A58SGcaTca3636AY.40.000056
ORF1ab/nsp358A58AgcAgcG2836B.1.617.20.000105
ORF1ab/nsp358A58AgcAgcT836B.1.617.20.00003
ORF1ab/nsp358A58AgcAgcG2834AY.40.000044
ORF1ab/nsp358A58AgcAgcT434AY.40.000006
ORF1ab/nsp358A58AgcAgcC234AY.40.000003
ORF1ab/nsp358A58VgCagTa2929AY.440.000177
ORF1ab/nsp358A58AgcAgcT2727AY.390.000667
ORF1ab/nsp358A58delGCA---2424All0.000005
ORF1ab/nsp358A58SGcaTca2121B.1.1.70.000019
ORF1ab/nsp358A58SGcaTca2020AY.1000.00092
ORF1ab/nsp358A58TGcaAca2020B0.002556
ORF1ab/nsp358A58VgCagTa1919B.1.617.20.000072
ORF1ab/nsp358A58AgcAgcT1717AY.50.000351
ORF1ab/nsp358A58TGcaAca1717B.1.1.3020.03527
ORF1ab/nsp358A58AgcAgcG1017B.1.5260.000235
ORF1ab/nsp358A58AgcAgcC717B.1.5260.000165
ORF1ab/nsp358A58AgcAgcG1616AY.260.000453
ORF1ab/nsp358A58VgCagTa1515B.1.10.000272
ORF1ab/nsp358A58VgCagTa1414B.1.1.5190.000556
ORF1ab/nsp358A58VgCagTa1414B.1.1.70.000013
ORF1ab/nsp358A58AgcAgcT1313B.1.177.170.010673
ORF1ab/nsp358A58AgcAgcT812AY.250.000048
ORF1ab/nsp358A58AgcAgcG412AY.250.000024
ORF1ab/nsp358A58TGcaAca1212AY.30.000119
ORF1ab/nsp358A58SGcaTca1212AY.740.001388
ORF1ab/nsp358A58AgcAgcG1012B.10.000092
ORF1ab/nsp358A58AgcAgcT212B.10.000018
ORF1ab/nsp358A58AgcAgcG1112C.370.001277
ORF1ab/nsp358A58AgcAgcT112C.370.000116
ORF1ab/nsp358A58TGcaAca1111B.1.1.2220.002244
ORF1ab/nsp358A58SGcaTca1111B.1.2210.000781
ORF1ab/nsp358A58SGcaTca1010AY.30.000099
ORF1ab/nsp358A58AgcAgcC1010AY.39.10.000396
ORF1ab/nsp358A58TGcaAca1010B.10.000092
ORF1ab/nsp358A58TGcaAca1010B.1.20.000088
ORF1ab/nsp358A58VgCagTa1010B.1.5260.000235
ORF1ab/nsp358A58AgcAgcG69AY.1030.000037
ORF1ab/nsp358A58AgcAgcT39AY.1030.000019
ORF1ab/nsp358A58AgcAgcT89B.1.20.00007
ORF1ab/nsp358A58AgcAgcC19B.1.20.000009
ORF1ab/nsp358A58VgCagTa88AY.1020.000212
ORF1ab/nsp358A58TGcaAca88AY.1190.000282
ORF1ab/nsp358A58VgCagTa88AY.430.000035
ORF1ab/nsp358A58VgCagTa88B.1.1770.000105
ORF1ab/nsp358A58AgcAgcT68B.1.1770.000079
ORF1ab/nsp358A58AgcAgcG28B.1.1770.000026
ORF1ab/nsp358A58VgCagTa88B.1.4270.000404
ORF1ab/nsp358A58AgcAgcT88B.1.5960.000697
ORF1ab/nsp358A58TGcaAca88B.1.6370.000585
ORF1ab/nsp358A58TGcaAca77AY.290.00011
ORF1ab/nsp358A58AgcAgcT67AY.430.000027
ORF1ab/nsp358A58AgcAgcG17AY.430.000004
ORF1ab/nsp358A58VgCagTa77B.1.1.330.002946
ORF1ab/nsp358A58VgCagTa77B.1.20.000062
ORF1ab/nsp358A58TGcaAca77B.1.258.160.011457
ORF1ab/nsp358A58AgcAgcT57P.10.000079
ORF1ab/nsp358A58AgcAgcG17P.10.000016
ORF1ab/nsp358A58AgcAgcC17P.10.000016
ORF1ab/nsp358A58EgCagAa66All0.000001
ORF1ab/nsp358A58SGcaTca66B.10.000055
ORF1ab/nsp358A58TGcaAca66B.1.1.370.001157
ORF1ab/nsp358A58TGcaAca66B.1.1770.000079
ORF1ab/nsp358A58AgcAgcT56B.1.466.20.001956
ORF1ab/nsp358A58AgcAgcG16B.1.466.20.000391
ORF1ab/nsp358A58TGcaAca66P.10.000095
ORF1ab/nsp358A58TGcaAca55AY.1020.000133
ORF1ab/nsp358A58VgCagTa55AY.1200.000186
ORF1ab/nsp358A58AgcAgcG55AY.20.001781
ORF1ab/nsp358A58TGcaAca55AY.370.00158
ORF1ab/nsp358A58TGcaAca55AY.390.000124
ORF1ab/nsp358A58AgcAgcG55AY.460.00052
ORF1ab/nsp358A58VgCagTa55AY.470.000156
ORF1ab/nsp358A58VgCagTa55B.1.177.730.002831
ORF1ab/nsp358A58VgCagTa55B.1.2430.000348
ORF1ab/nsp358A58AgcAgcT35B.1.36.170.001482
ORF1ab/nsp358A58AgcAgcG25B.1.36.170.000988
ORF1ab/nsp358A58TGcaAca55B.1.3610.006443
ORF1ab/nsp358A58PGcaCca44All0.000001
ORF1ab/nsp358A58GgCagGa34All0.000001
ORF1ab/nsp358A58GgCAgGT14All0
ORF1ab/nsp358A58SGcaTca44AY.250.000024
ORF1ab/nsp358A58SGcaTca44AY.390.000099
ORF1ab/nsp358A58SGcaTca44AY.50.000083
ORF1ab/nsp358A58VgCagTa44B.10.000037
ORF1ab/nsp358A58TGcaAca44B.1.1.3170.001647
ORF1ab/nsp358A58delGCA---44B.1.1.70.000004
ORF1ab/nsp358A58AgcAgcC44B.1.258.170.000416
ORF1ab/nsp358A58AgcAgcG24B.1.4290.000047
ORF1ab/nsp358A58AgcAgcT24B.1.4290.000047
ORF1ab/nsp358A58AgcAgcC33A.250.054545
ORF1ab/nsp358A58SGcaTca33AY.1030.000019
ORF1ab/nsp358A58TGcaAca33AY.1180.000188
ORF1ab/nsp358A58VgCagTa33AY.390.000074
ORF1ab/nsp358A58SGcaTca33AY.440.000018
ORF1ab/nsp358A58TGcaAca33B.1.10.000054
ORF1ab/nsp358A58delGCA---33B.1.1.330.001263
ORF1ab/nsp358A58VgCagTa33B.40.006623
ORF1ab/nsp358A58VgCagTa33C.160.003181
ORF1ab/nsp358A58TGcAAcT220.111111
ORF1ab/nsp358A58delGCA---220.111111
ORF1ab/nsp358A58VgCagTa22AT.10.010256
ORF1ab/nsp358A58VgCagTa22AY.1030.000012
ORF1ab/nsp358A58GgCagGa22AY.1030.000012
ORF1ab/nsp358A58AgcAgcG22AY.1170.000169
ORF1ab/nsp358A58SGcaTca22AY.1190.000071
ORF1ab/nsp358A58AgcAgcG22AY.160.000759
ORF1ab/nsp358A58SGcaTca22AY.260.000057
ORF1ab/nsp358A58AgcAgcG22AY.30.00002
ORF1ab/nsp358A58SGcaTca22AY.320.001065
ORF1ab/nsp358A58SGcaTca22AY.420.00008
ORF1ab/nsp358A58TGcaAca22AY.420.00008
ORF1ab/nsp358A58AgcAgcT22AY.420.00008
ORF1ab/nsp358A58TGcaAca22AY.440.000012
ORF1ab/nsp358A58TGcaAca22AY.470.000062
ORF1ab/nsp358A58TGcaAca22AY.480.00093
ORF1ab/nsp358A58VgCagTa22AY.50.000041
ORF1ab/nsp358A58EgCagAa22AY.530.000575
ORF1ab/nsp358A58AgcAgcT22AY.60.000082
ORF1ab/nsp358A58TGcaAca22AY.980.000158
ORF1ab/nsp358A58EgCagAa22B.10.000018
ORF1ab/nsp358A58PGcaCca22B.10.000018
ORF1ab/nsp358A58GgCAgGT12B.10.000009
ORF1ab/nsp358A58GgCagGa12B.10.000009
ORF1ab/nsp358A58AgcAgcG22B.1.10.000036
ORF1ab/nsp358A58SGcaTca22B.1.10.000036
ORF1ab/nsp358A58VgCagTa22B.1.1.2140.000111
ORF1ab/nsp358A58VgCagTa22B.1.1.2190.01
ORF1ab/nsp358A58delGCA---22B.1.1.3480.001592
ORF1ab/nsp358A58TGcaAca22B.1.1.5190.000079
ORF1ab/nsp358A58AgcAgcT22B.1.1600.000062
ORF1ab/nsp358A58SGcaTca22B.1.177.500.00939
ORF1ab/nsp358A58VgCagTa22B.1.177.70.00033
ORF1ab/nsp358A58AgcAgcT22B.1.3510.000059
ORF1ab/nsp358A58TGcaAca22B.1.360.000292
ORF1ab/nsp358A58TGcaAca22B.1.36.220.002415
ORF1ab/nsp358A58SGcaTca22B.1.5260.000047
ORF1ab/nsp358A58AgcAgcT22B.1.5270.007407
ORF1ab/nsp358A58VgCagTa22B.1.5960.000174
ORF1ab/nsp358A58TGcaAca22B.1.5960.000174
ORF1ab/nsp358A58AgcAgcT12B.1.6210.000089
ORF1ab/nsp358A58AgcAgcG12B.1.6210.000089
ORF1ab/nsp358A58SGcaTca22B.100.016529
ORF1ab/nsp358A58TGcaAca22B.550.0059
ORF1ab/nsp358A58TGcaAca22B.60.00182
ORF1ab/nsp358A58delGCA---22N.60.014184
ORF1ab/nsp358A58TGcaAca22P.1.100.000539
ORF1ab/nsp358A58VgCagTa22P.1.120.000968
ORF1ab/nsp358A58AgcAgcG22P.1.140.000096
ORF1ab/nsp358A58TGcaAca22P.20.000373
ORF1ab/nsp358A58AgcAgcG22R.10.00018
ORF1ab/nsp358A58TGcaAca11A.2.5.10.004808
ORF1ab/nsp358A58del1gCag-a11All0
ORF1ab/nsp358A58IGCaATa11All0
ORF1ab/nsp358A58TGcaAca11AU.30.00211
ORF1ab/nsp358A58TGcaAca11AY.100.00053
ORF1ab/nsp358A58TGcaAca11AY.1000.000046
ORF1ab/nsp358A58AgcAgcT11AY.1020.000027
ORF1ab/nsp358A58SGcaTca11AY.1020.000027
ORF1ab/nsp358A58TGcaAca11AY.1080.001103
ORF1ab/nsp358A58VgCagTa11AY.110.001339
ORF1ab/nsp358A58AgcAgcT11AY.1180.000063
ORF1ab/nsp358A58VgCagTa11AY.1180.000063
ORF1ab/nsp358A58AgcAgcG11AY.1190.000035
ORF1ab/nsp358A58TGcaAca11AY.1200.000037
ORF1ab/nsp358A58SGcaTca11AY.1210.000135
ORF1ab/nsp358A58VgCagTa11AY.20.000356
ORF1ab/nsp358A58AgcAgcG11AY.200.000039
ORF1ab/nsp358A58AgcAgcT11AY.230.00007
ORF1ab/nsp358A58VgCagTa11AY.230.00007
ORF1ab/nsp358A58EgCagAa11AY.250.000006
ORF1ab/nsp358A58VgCagTa11AY.30.00001
ORF1ab/nsp358A58TGcaAca11AY.39.10.00004
ORF1ab/nsp358A58SGcaTca11AY.4.20.000022
ORF1ab/nsp358A58PGcaCca11AY.4.2.10.000149
ORF1ab/nsp358A58TGcaAca11AY.4.40.000409
ORF1ab/nsp358A58VgCagTa11AY.420.00004
ORF1ab/nsp358A58AgcAgcG11AY.450.000122
ORF1ab/nsp358A58TGcaAca11AY.450.000122
ORF1ab/nsp358A58TGcaAca11AY.460.000104
ORF1ab/nsp358A58VgCagTa11AY.46.60.000072
ORF1ab/nsp358A58SGcaTca11AY.46.60.000072
ORF1ab/nsp358A58TGcaAca11AY.50.000021
ORF1ab/nsp358A58VgCagTa11AY.5.40.000277
ORF1ab/nsp358A58TGcaAca11AY.590.00053
ORF1ab/nsp358A58VgCagTa11AY.610.000105
ORF1ab/nsp358A58VgCagTa11AY.650.000533
ORF1ab/nsp358A58AgcAgcG11AY.650.000533
ORF1ab/nsp358A58AgcAgcG11AY.670.000464
ORF1ab/nsp358A58VgCagTa11AY.750.000056
ORF1ab/nsp358A58VgCagTa11AY.75.10.00018
ORF1ab/nsp358A58VgCagTa11AY.840.000437
ORF1ab/nsp358A58VgCagTa11AY.850.000427
ORF1ab/nsp358A58SGcaTca11AY.890.004902
ORF1ab/nsp358A58SGcaTca11AY.90.000068
ORF1ab/nsp358A58delGCA---11AY.9.20.000037
ORF1ab/nsp358A58VgCagTa11AY.910.00073
ORF1ab/nsp358A58SGcaTca11AY.920.000287
ORF1ab/nsp358A58AgcAgcT11AY.980.000079
ORF1ab/nsp358A58AgcAgcT11AY.98.10.000048
ORF1ab/nsp358A58VgCagTa11AY.99.20.000092
ORF1ab/nsp358A58PGcaCca11B0.000128
ORF1ab/nsp358A58delGCA---11B.10.000009
ORF1ab/nsp358A58delGCA---11B.1.10.000018
ORF1ab/nsp358A58VgCagTa11B.1.1.1320.014925
ORF1ab/nsp358A58AgcAgcT11B.1.1.2200.001859
ORF1ab/nsp358A58SGcaTca11B.1.1.2400.004695
ORF1ab/nsp358A58AgcAgcT11B.1.1.280.000311
ORF1ab/nsp358A58TGcaAca11B.1.1.2940.001266
ORF1ab/nsp358A58VgCagTa11B.1.1.310.066667
ORF1ab/nsp358A58AgcAgcT11B.1.1.370.000193
ORF1ab/nsp358A58AgcAgcT11B.1.1.390.00051
ORF1ab/nsp358A58TGcaAca11B.1.1.4090.002833
ORF1ab/nsp358A58AgcAgcG11B.1.1.410.006329
ORF1ab/nsp358A58VgCagTa11B.1.1.4160.000905
ORF1ab/nsp358A58VgCagTa11B.1.1.4180.022727
ORF1ab/nsp358A58SGcaTca11B.1.1.5000.02
ORF1ab/nsp358A58TGcaAca11B.1.110.30.000718
ORF1ab/nsp358A58VgCagTa11B.1.1110.001175
ORF1ab/nsp358A58TGcaAca11B.1.1470.000756
ORF1ab/nsp358A58VgCagTa11B.1.1620.005025
ORF1ab/nsp358A58SGcaTca11B.1.1770.000013
ORF1ab/nsp358A58delGCA---11B.1.177.510.004566
ORF1ab/nsp358A58AgcAgcG11B.1.177.730.000566
ORF1ab/nsp358A58AgcAgcT11B.1.2390.001221
ORF1ab/nsp358A58del1gCag-a11B.1.2430.00007
ORF1ab/nsp358A58delGCA---11B.1.2580.000067
ORF1ab/nsp358A58AgcAgcG11B.1.30.002618
ORF1ab/nsp358A58delGCA---11B.1.3510.00003
ORF1ab/nsp358A58TGcaAca11B.1.3670.000792
ORF1ab/nsp358A58TGcaAca11B.1.3990.001934
ORF1ab/nsp358A58TGcaAca11B.1.4270.00005
ORF1ab/nsp358A58IGCaATa11B.1.4270.00005
ORF1ab/nsp358A58delGCA---11B.1.4290.000024
ORF1ab/nsp358A58SGcaTca11B.1.4290.000024
ORF1ab/nsp358A58TGcaAca11B.1.438.10.000107
ORF1ab/nsp358A58VgCagTa11B.1.438.10.000107
ORF1ab/nsp358A58TGcaAca11B.1.4670.04
ORF1ab/nsp358A58AgcAgcG11B.1.5170.000427
ORF1ab/nsp358A58TGcaAca11B.1.5610.000397
ORF1ab/nsp358A58delGCA---11B.1.5770.000687
ORF1ab/nsp358A58TGcaAca11B.1.5810.009434
ORF1ab/nsp358A58AgcAgcT11B.1.617.10.000129
ORF1ab/nsp358A58EgCagAa11B.1.617.20.000004
ORF1ab/nsp358A58delGCA---11B.1.617.20.000004
ORF1ab/nsp358A58SGcaTca11B.1.6210.000089
ORF1ab/nsp358A58VgCagTa11B.1.6210.000089
ORF1ab/nsp358A58TGcaAca11B.1.90.006173
ORF1ab/nsp358A58TGcaAca11B.280.003279
ORF1ab/nsp358A58TGcaAca11B.6.60.000889
ORF1ab/nsp358A58delGCA---11C.170.055556
ORF1ab/nsp358A58VgCagTa11C.360.000911
ORF1ab/nsp358A58SGcaTca11C.370.000116
ORF1ab/nsp358A58VgCagTa11C.370.000116
ORF1ab/nsp358A58VgCagTa11N.10.016949
ORF1ab/nsp358A58delGCA---11P.10.000016
ORF1ab/nsp358A58VgCagTa11P.1.150.000232
ORF1ab/nsp358A58AgcAgcG11P.1.150.000232
ORF1ab/nsp358A58TGcaAca11P.1.170.000162
ORF1ab/nsp358A58TGcaAca11P.1.60.001946
ORF1ab/nsp358A58SGcaTca11P.20.000187
ORF1ab/nsp358A58TGcaAca11Q.10.000126