CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 58 | A58T | A876T | nonsyn | Gca | Aca | 2551 | 2549 | 0.999216 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58T | A876T | nonsyn | GcA | AcT | 2551 | 2 | 0.000784006 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58V | A876V | nonsyn | gCa | gTa | 1461 | 1461 | 1 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58A | A876A | syn | gcA | gcG | 436 | 240 | 0.550459 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58A | A876A | syn | gcA | gcT | 436 | 163 | 0.373853 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58A | A876A | syn | gcA | gcC | 436 | 33 | 0.0756881 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58S | A876S | nonsyn | Gca | Tca | 341 | 341 | 1 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58del | A876del | del | GCA | --- | 24 | 24 | 1 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58E | A876E | nonsyn | gCa | gAa | 6 | 6 | 1 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58P | A876P | nonsyn | Gca | Cca | 4 | 4 | 1 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58G | A876G | nonsyn | gCa | gGa | 4 | 3 | 0.75 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58G | A876G | nonsyn | gCA | gGT | 4 | 1 | 0.25 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58I | A876I | nonsyn | GCa | ATa | 1 | 1 | 1 | 2891-2893 |
ORF1ab/nsp3 | 58 | A58del1 | A876del1 | del | gCa | g-a | 1 | 1 | 1 | 2891-2893 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2549 | 2551 | All | 0.000488 |
ORF1ab/nsp3 | 58 | A58T | GcA | AcT | 2 | 2551 | All | 0 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1461 | 1461 | All | 0.000279 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1182 | 1182 | B.3 | 0.981728 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1078 | 1078 | AY.25 | 0.006484 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 599 | 599 | B.3.1 | 0.993367 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 240 | 436 | All | 0.000046 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 163 | 436 | All | 0.000031 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcC | 33 | 436 | All | 0.000006 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 341 | 341 | All | 0.000065 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 132 | 132 | AY.4.1 | 0.097345 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 129 | 129 | AY.43 | 0.000572 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 117 | 117 | B.1.468 | 0.668571 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 113 | 113 | AY.25 | 0.00068 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 68 | 68 | AY.4 | 0.000106 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 44 | 53 | AY.44 | 0.000268 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 7 | 53 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcC | 2 | 53 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 41 | 52 | B.1.1.7 | 0.000037 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 8 | 52 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcC | 3 | 52 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 48 | 48 | B.1.617.2 | 0.000181 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 48 | 48 | P.1 | 0.000756 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 43 | 43 | B.1.221.3 | 0.035833 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 42 | 42 | AY.43 | 0.000186 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 39 | 39 | AY.103 | 0.000242 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 38 | 38 | B.1.1.7 | 0.000034 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 37 | 37 | AY.4 | 0.000058 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 37 | 37 | B.1.617.2 | 0.000139 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 36 | 36 | AY.4 | 0.000056 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 28 | 36 | B.1.617.2 | 0.000105 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 8 | 36 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 28 | 34 | AY.4 | 0.000044 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 4 | 34 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcC | 2 | 34 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 29 | 29 | AY.44 | 0.000177 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 27 | 27 | AY.39 | 0.000667 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 24 | 24 | All | 0.000005 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 20 | 20 | AY.100 | 0.00092 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 20 | 20 | B | 0.002556 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 17 | 17 | AY.5 | 0.000351 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 17 | 17 | B.1.1.302 | 0.03527 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 10 | 17 | B.1.526 | 0.000235 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcC | 7 | 17 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 14 | 14 | B.1.1.519 | 0.000556 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 13 | 13 | B.1.177.17 | 0.010673 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 8 | 12 | AY.25 | 0.000048 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 4 | 12 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 12 | 12 | AY.74 | 0.001388 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 10 | 12 | B.1 | 0.000092 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 2 | 12 | B.1 | 0.000018 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 11 | 12 | C.37 | 0.001277 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 12 | C.37 | 0.000116 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 11 | 11 | B.1.1.222 | 0.002244 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 11 | 11 | B.1.221 | 0.000781 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 10 | 10 | AY.3 | 0.000099 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcC | 10 | 10 | AY.39.1 | 0.000396 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 6 | 9 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 3 | 9 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 8 | 9 | B.1.2 | 0.00007 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcC | 1 | 9 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 8 | 8 | AY.102 | 0.000212 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 6 | 8 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 2 | 8 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 6 | 7 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 7 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 7 | 7 | B.1.258.16 | 0.011457 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 5 | 7 | P.1 | 0.000079 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 7 | P.1 | 0.000016 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcC | 1 | 7 | P.1 | 0.000016 |
ORF1ab/nsp3 | 58 | A58E | gCa | gAa | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 6 | 6 | B.1.1.37 | 0.001157 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 5 | 6 | B.1.466.2 | 0.001956 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 6 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 5 | 5 | AY.2 | 0.001781 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 5 | 5 | AY.37 | 0.00158 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 5 | 5 | B.1.177.73 | 0.002831 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 3 | 5 | B.1.36.17 | 0.001482 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 2 | 5 | B.1.36.17 | 0.000988 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 5 | 5 | B.1.361 | 0.006443 |
ORF1ab/nsp3 | 58 | A58P | Gca | Cca | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 58 | A58G | gCa | gGa | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 58 | A58G | gCA | gGT | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcC | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 2 | 4 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 2 | 4 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcC | 3 | 3 | A.25 | 0.054545 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 3 | 3 | B.4 | 0.006623 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp3 | 58 | A58T | GcA | AcT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 2 | 2 | AT.1 | 0.010256 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 58 | A58G | gCa | gGa | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 58 | A58E | gCa | gAa | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 58 | A58E | gCa | gAa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 58 | A58P | Gca | Cca | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 58 | A58G | gCA | gGT | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 58 | A58G | gCa | gGa | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 2 | 2 | B.1.1.219 | 0.01 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 2 | 2 | B.1.527 | 0.007407 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 2 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 2 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 2 | 2 | B.10 | 0.016529 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | B.55 | 0.0059 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp3 | 58 | A58del1 | gCa | g-a | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 58 | A58I | GCa | ATa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 58 | A58E | gCa | gAa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 58 | A58P | Gca | Cca | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 58 | A58P | Gca | Cca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | B.1.1.132 | 0.014925 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | B.1.1.31 | 0.066667 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | B.1.1.418 | 0.022727 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | B.1.1.500 | 0.02 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | B.1.162 | 0.005025 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 58 | A58del1 | gCa | g-a | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 58 | A58I | GCa | ATa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.1.467 | 0.04 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 58 | A58E | gCa | gAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp3 | 58 | A58del | GCA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 58 | A58V | gCa | gTa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 58 | A58A | gcA | gcG | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp3 | 58 | A58S | Gca | Tca | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 58 | A58T | Gca | Aca | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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