CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 551

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3551G551GG1369GsynggAggG5084320.8503944370-4372
ORF1ab/nsp3551G551GG1369GsynggAggC508640.1259844370-4372
ORF1ab/nsp3551G551GG1369GsynggAggT508120.0236224370-4372
ORF1ab/nsp3551G551del1G1369del1delGga-ga3453440.9971014370-4372
ORF1ab/nsp3551G551del1G1369del1delggAgg-34510.002898554370-4372
ORF1ab/nsp3551G551RG1369RnonsynGgaAga1811780.9834254370-4372
ORF1ab/nsp3551G551RG1369RnonsynGgaCga18130.01657464370-4372
ORF1ab/nsp3551G551delG1369deldelGGA---474714370-4372
ORF1ab/nsp3551G551VG1369VnonsyngGagTa252514370-4372
ORF1ab/nsp3551G551EG1369EnonsyngGagAa212114370-4372
ORF1ab/nsp3551G551XG1369XnonsynGgaTga161614370-4372
ORF1ab/nsp3551G551LG1369LnonsynGGaTTa4414370-4372
ORF1ab/nsp3551G551PG1369PnonsynGGaCCa2214370-4372
ORF1ab/nsp3551G551del2G1369del2delGGa--a1114370-4372
ORF1ab/nsp3551G551AG1369AnonsyngGagCa1114370-4372

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3551G551GggAggG432508All0.000083
ORF1ab/nsp3551G551GggAggC64508All0.000012
ORF1ab/nsp3551G551GggAggT12508All0.000002
ORF1ab/nsp3551G551del1Gga-ga344345All0.000066
ORF1ab/nsp3551G551del1ggAgg-1345All0
ORF1ab/nsp3551G551GggAggG184184B.1.1.3060.080666
ORF1ab/nsp3551G551RGgaAga178181All0.000034
ORF1ab/nsp3551G551RGgaCga3181All0.000001
ORF1ab/nsp3551G551del1Gga-ga9898AY.440.000597
ORF1ab/nsp3551G551del1Gga-ga6969B.1.20.000608
ORF1ab/nsp3551G551RGgaAga5252AY.190.059293
ORF1ab/nsp3551G551GggAggG3251B.1.1.70.000029
ORF1ab/nsp3551G551GggAggC1951B.1.1.70.000017
ORF1ab/nsp3551G551delGGA---4747All0.000009
ORF1ab/nsp3551G551del1Gga-ga3838AY.1030.000236
ORF1ab/nsp3551G551del1Gga-ga3434AY.120.10.010915
ORF1ab/nsp3551G551RGgaAga3434B.1.1.70.00003
ORF1ab/nsp3551G551GggAggG3134B.1.617.20.000117
ORF1ab/nsp3551G551GggAggC234B.1.617.20.000008
ORF1ab/nsp3551G551GggAggT134B.1.617.20.000004
ORF1ab/nsp3551G551GggAggC2626B.1.416.10.040625
ORF1ab/nsp3551G551VgGagTa2525All0.000005
ORF1ab/nsp3551G551RGgaAga2425AY.40.000037
ORF1ab/nsp3551G551RGgaCga125AY.40.000002
ORF1ab/nsp3551G551delGGA---2525B.1.1.70.000022
ORF1ab/nsp3551G551EgGagAa2121All0.000004
ORF1ab/nsp3551G551GggAggG1819B.1.20.000158
ORF1ab/nsp3551G551GggAggC119B.1.20.000009
ORF1ab/nsp3551G551del1Gga-ga1919B.1.617.20.000072
ORF1ab/nsp3551G551del1Gga-ga1818AY.30.000179
ORF1ab/nsp3551G551GggAggG1717B.1.1.2910.012621
ORF1ab/nsp3551G551GggAggG1717B.1.5480.607143
ORF1ab/nsp3551G551XGgaTga1616All0.000003
ORF1ab/nsp3551G551GggAggG1616AY.1000.000736
ORF1ab/nsp3551G551GggAggG1213AY.1030.000075
ORF1ab/nsp3551G551GggAggC113AY.1030.000006
ORF1ab/nsp3551G551RGgaAga1212AY.390.000297
ORF1ab/nsp3551G551del1Gga-ga1212B.1.1.70.000011
ORF1ab/nsp3551G551GggAggG1111B.1.1.3400.5
ORF1ab/nsp3551G551RGgaAga1111B.1.617.20.000041
ORF1ab/nsp3551G551GggAggG1010B.1.10.000181
ORF1ab/nsp3551G551del1Gga-ga99AY.250.000054
ORF1ab/nsp3551G551EgGagAa99B.1.1.70.000008
ORF1ab/nsp3551G551GggAggG99B.1.1770.000119
ORF1ab/nsp3551G551GggAggG88AY.1090.005917
ORF1ab/nsp3551G551RGgaAga88AY.30.00008
ORF1ab/nsp3551G551GggAggG77AY.430.000031
ORF1ab/nsp3551G551RGgaAga77C.350.005418
ORF1ab/nsp3551G551GggAggG66AY.1080.006615
ORF1ab/nsp3551G551GggAggG56AY.40.000008
ORF1ab/nsp3551G551GggAggC16AY.40.000002
ORF1ab/nsp3551G551GggAggT66AY.680.001642
ORF1ab/nsp3551G551EgGagAa55AY.430.000022
ORF1ab/nsp3551G551RGgaAga55B.1.1770.000066
ORF1ab/nsp3551G551LGGaTTa44All0.000001
ORF1ab/nsp3551G551del1Gga-ga44AY.1190.000141
ORF1ab/nsp3551G551del1Gga-ga44AY.260.000113
ORF1ab/nsp3551G551delGGA---44AY.4.50.00043
ORF1ab/nsp3551G551VgGagTa44AY.430.000018
ORF1ab/nsp3551G551GggAggG24AY.440.000012
ORF1ab/nsp3551G551GggAggC14AY.440.000006
ORF1ab/nsp3551G551GggAggT14AY.440.000006
ORF1ab/nsp3551G551del1Gga-ga44AY.540.000381
ORF1ab/nsp3551G551delGGA---44B.1.1770.000053
ORF1ab/nsp3551G551GggAggG44B.1.177.570.001124
ORF1ab/nsp3551G551VgGagTa44B.1.617.20.000015
ORF1ab/nsp3551G551GggAggT13AY.250.000006
ORF1ab/nsp3551G551GggAggC13AY.250.000006
ORF1ab/nsp3551G551GggAggG13AY.250.000006
ORF1ab/nsp3551G551delGGA---33AY.40.000005
ORF1ab/nsp3551G551del1Gga-ga33AY.470.000093
ORF1ab/nsp3551G551VgGagTa33B.10.000027
ORF1ab/nsp3551G551XGgaTga33B.10.000027
ORF1ab/nsp3551G551del1Gga-ga23B.10.000018
ORF1ab/nsp3551G551del1ggAgg-13B.10.000009
ORF1ab/nsp3551G551GggAggG33B.1.177.430.004431
ORF1ab/nsp3551G551GggAggG23B.1.4270.000101
ORF1ab/nsp3551G551GggAggT13B.1.4270.00005
ORF1ab/nsp3551G551GggAggG23B.1.4290.000047
ORF1ab/nsp3551G551GggAggT13B.1.4290.000024
ORF1ab/nsp3551G551del1Gga-ga220.111111
ORF1ab/nsp3551G551PGGaCCa22All0
ORF1ab/nsp3551G551GggAggC22AY.1020.000053
ORF1ab/nsp3551G551RGgaAga22AY.1110.000366
ORF1ab/nsp3551G551del1Gga-ga22AY.1200.000074
ORF1ab/nsp3551G551GggAggG12AY.1200.000037
ORF1ab/nsp3551G551GggAggC12AY.1200.000037
ORF1ab/nsp3551G551del1Gga-ga22AY.140.000176
ORF1ab/nsp3551G551del1Gga-ga22AY.20.000712
ORF1ab/nsp3551G551GggAggG22AY.230.000139
ORF1ab/nsp3551G551RGgaAga22AY.260.000057
ORF1ab/nsp3551G551RGgaAga22AY.3.10.000171
ORF1ab/nsp3551G551GggAggG22AY.340.000194
ORF1ab/nsp3551G551GggAggG22AY.370.000632
ORF1ab/nsp3551G551del1Gga-ga22AY.390.000049
ORF1ab/nsp3551G551LGGaTTa22AY.430.000009
ORF1ab/nsp3551G551XGgaTga22AY.430.000009
ORF1ab/nsp3551G551XGgaTga22AY.440.000012
ORF1ab/nsp3551G551GggAggC12B.10.000009
ORF1ab/nsp3551G551GggAggG12B.10.000009
ORF1ab/nsp3551G551RGgaAga12B.1.10.000018
ORF1ab/nsp3551G551RGgaCga12B.1.10.000018
ORF1ab/nsp3551G551GggAggG22B.1.1.370.000386
ORF1ab/nsp3551G551del1Gga-ga22B.1.1.5190.000079
ORF1ab/nsp3551G551VgGagTa22B.1.1.70.000002
ORF1ab/nsp3551G551del1Gga-ga22B.1.110.30.001437
ORF1ab/nsp3551G551GggAggG22B.1.177.540.001213
ORF1ab/nsp3551G551EgGagAa22B.1.20.000018
ORF1ab/nsp3551G551del1Gga-ga22B.1.4260.002018
ORF1ab/nsp3551G551RGgaAga22B.1.4280.002041
ORF1ab/nsp3551G551VgGagTa22B.1.5960.000174
ORF1ab/nsp3551G551RGgaAga12B.1.5960.000087
ORF1ab/nsp3551G551RGgaCga12B.1.5960.000087
ORF1ab/nsp3551G551delGGA---22B.1.617.20.000008
ORF1ab/nsp3551G551GggAggG22B.1.6200.001892
ORF1ab/nsp3551G551XGgaTga22D.20.00015
ORF1ab/nsp3551G551VgGagTa11A0.000387
ORF1ab/nsp3551G551GggAggG11A.23.10.000704
ORF1ab/nsp3551G551GggAggG11AE.20.058824
ORF1ab/nsp3551G551AgGagCa11All0
ORF1ab/nsp3551G551del2GGa--a11All0
ORF1ab/nsp3551G551delGGA---11AY.1110.000183
ORF1ab/nsp3551G551del1Gga-ga11AY.1130.000142
ORF1ab/nsp3551G551RGgaAga11AY.1190.000035
ORF1ab/nsp3551G551XGgaTga11AY.120.10.000321
ORF1ab/nsp3551G551RGgaAga11AY.120.2.10.000498
ORF1ab/nsp3551G551del1Gga-ga11AY.200.000039
ORF1ab/nsp3551G551PGGaCCa11AY.230.00007
ORF1ab/nsp3551G551delGGA---11AY.250.000006
ORF1ab/nsp3551G551GggAggG11AY.260.000028
ORF1ab/nsp3551G551GggAggC11AY.270.000065
ORF1ab/nsp3551G551GggAggC11AY.290.000016
ORF1ab/nsp3551G551GggAggC11AY.300.000396
ORF1ab/nsp3551G551RGgaAga11AY.330.000067
ORF1ab/nsp3551G551GggAggG11AY.34.10.00051
ORF1ab/nsp3551G551del2GGa--a11AY.40.000002
ORF1ab/nsp3551G551EgGagAa11AY.40.000002
ORF1ab/nsp3551G551RGgaAga11AY.4.20.000022
ORF1ab/nsp3551G551GggAggC11AY.420.00004
ORF1ab/nsp3551G551delGGA---11AY.430.000004
ORF1ab/nsp3551G551RGgaAga11AY.430.000004
ORF1ab/nsp3551G551EgGagAa11AY.440.000006
ORF1ab/nsp3551G551RGgaAga11AY.440.000006
ORF1ab/nsp3551G551GggAggC11AY.460.000104
ORF1ab/nsp3551G551XGgaTga11AY.46.20.000635
ORF1ab/nsp3551G551RGgaAga11AY.46.50.000198
ORF1ab/nsp3551G551GggAggG11AY.46.60.000072
ORF1ab/nsp3551G551RGgaAga11AY.50.000021
ORF1ab/nsp3551G551GggAggG11AY.5.30.000337
ORF1ab/nsp3551G551VgGagTa11AY.520.000814
ORF1ab/nsp3551G551VgGagTa11AY.60.000041
ORF1ab/nsp3551G551GggAggG11AY.610.000105
ORF1ab/nsp3551G551del1Gga-ga11AY.670.000464
ORF1ab/nsp3551G551del1Gga-ga11AY.710.000475
ORF1ab/nsp3551G551del1Gga-ga11AY.790.001211
ORF1ab/nsp3551G551del1Gga-ga11AY.810.001992
ORF1ab/nsp3551G551RGgaAga11AY.860.00083
ORF1ab/nsp3551G551GggAggG11AY.90.000068
ORF1ab/nsp3551G551del1Gga-ga11AY.9.20.000037
ORF1ab/nsp3551G551GggAggG11AY.98.10.000048
ORF1ab/nsp3551G551VgGagTa11B0.000128
ORF1ab/nsp3551G551XGgaTga11B0.000128
ORF1ab/nsp3551G551LGGaTTa11B0.000128
ORF1ab/nsp3551G551GggAggT11B0.000128
ORF1ab/nsp3551G551del1Gga-ga11B.1.10.000018
ORF1ab/nsp3551G551GggAggG11B.1.1.1590.004673
ORF1ab/nsp3551G551XGgaTga11B.1.1.2160.00089
ORF1ab/nsp3551G551GggAggC11B.1.1.2850.006536
ORF1ab/nsp3551G551delGGA---11B.1.1.3110.000358
ORF1ab/nsp3551G551RGgaAga11B.1.1.3170.000412
ORF1ab/nsp3551G551EgGagAa11B.1.1.3180.000302
ORF1ab/nsp3551G551GggAggG11B.1.1.3710.010417
ORF1ab/nsp3551G551VgGagTa11B.1.1.4090.002833
ORF1ab/nsp3551G551GggAggG11B.1.1.4090.002833
ORF1ab/nsp3551G551delGGA---11B.1.1.5190.00004
ORF1ab/nsp3551G551AgGagCa11B.1.1.70.000001
ORF1ab/nsp3551G551EgGagAa11B.1.1260.001276
ORF1ab/nsp3551G551VgGagTa11B.1.1600.000031
ORF1ab/nsp3551G551delGGA---11B.1.1600.000031
ORF1ab/nsp3551G551delGGA---11B.1.177.630.002703
ORF1ab/nsp3551G551GggAggC11B.1.177.690.001484
ORF1ab/nsp3551G551GggAggG11B.1.177.770.000726
ORF1ab/nsp3551G551del1Gga-ga11B.1.2340.000132
ORF1ab/nsp3551G551GggAggG11B.1.2340.000132
ORF1ab/nsp3551G551RGgaAga11B.1.2430.00007
ORF1ab/nsp3551G551VgGagTa11B.1.2430.00007
ORF1ab/nsp3551G551VgGagTa11B.1.2580.000067
ORF1ab/nsp3551G551VgGagTa11B.1.3010.005917
ORF1ab/nsp3551G551LGGaTTa11B.1.3010.005917
ORF1ab/nsp3551G551XGgaTga11B.1.3010.005917
ORF1ab/nsp3551G551del1Gga-ga11B.1.3240.001605
ORF1ab/nsp3551G551RGgaAga11B.1.3490.000715
ORF1ab/nsp3551G551RGgaAga11B.1.3510.00003
ORF1ab/nsp3551G551delGGA---11B.1.360.000146
ORF1ab/nsp3551G551GggAggC11B.1.36.310.001751
ORF1ab/nsp3551G551GggAggG11B.1.3690.000285
ORF1ab/nsp3551G551XGgaTga11B.1.3770.004566
ORF1ab/nsp3551G551del1Gga-ga11B.1.3770.004566
ORF1ab/nsp3551G551delGGA---11B.1.4150.014286
ORF1ab/nsp3551G551RGgaAga11B.1.4250.002994
ORF1ab/nsp3551G551GggAggG11B.1.4280.00102
ORF1ab/nsp3551G551EgGagAa11B.1.4290.000024
ORF1ab/nsp3551G551GggAggG11B.1.5030.002488
ORF1ab/nsp3551G551GggAggG11B.1.5250.000113
ORF1ab/nsp3551G551del1Gga-ga11B.1.5260.000024
ORF1ab/nsp3551G551del1Gga-ga11B.1.5760.000907
ORF1ab/nsp3551G551XGgaTga11B.1.5950.000261
ORF1ab/nsp3551G551del1Gga-ga11B.1.5960.000087
ORF1ab/nsp3551G551PGGaCCa11B.1.617.10.000129
ORF1ab/nsp3551G551VgGagTa11B.1.6230.000536
ORF1ab/nsp3551G551GggAggG11B.1.6370.000073
ORF1ab/nsp3551G551GggAggG11P.10.000016
ORF1ab/nsp3551G551GggAggG11P.1.100.000269
ORF1ab/nsp3551G551RGgaAga11Q.10.000126