CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 551

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3551G551GG1369GsynggAggG5084320.8503944370-4372
ORF1ab/nsp3551G551GG1369GsynggAggC508640.1259844370-4372
ORF1ab/nsp3551G551GG1369GsynggAggT508120.0236224370-4372
ORF1ab/nsp3551G551del1G1369del1delGga-ga3453440.9971014370-4372
ORF1ab/nsp3551G551del1G1369del1delggAgg-34510.002898554370-4372
ORF1ab/nsp3551G551RG1369RnonsynGgaAga1811780.9834254370-4372
ORF1ab/nsp3551G551RG1369RnonsynGgaCga18130.01657464370-4372
ORF1ab/nsp3551G551delG1369deldelGGA---474714370-4372
ORF1ab/nsp3551G551VG1369VnonsyngGagTa252514370-4372
ORF1ab/nsp3551G551EG1369EnonsyngGagAa212114370-4372
ORF1ab/nsp3551G551XG1369XnonsynGgaTga161614370-4372
ORF1ab/nsp3551G551LG1369LnonsynGGaTTa4414370-4372
ORF1ab/nsp3551G551PG1369PnonsynGGaCCa2214370-4372
ORF1ab/nsp3551G551del2G1369del2delGGa--a1114370-4372
ORF1ab/nsp3551G551AG1369AnonsyngGagCa1114370-4372

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3551G551GggAggG432508All0.000083
ORF1ab/nsp3551G551GggAggC64508All0.000012
ORF1ab/nsp3551G551GggAggT12508All0.000002
ORF1ab/nsp3551G551del1Gga-ga344345All0.000066
ORF1ab/nsp3551G551del1ggAgg-1345All0
ORF1ab/nsp3551G551GggAggG184184B.1.1.3060.080666
ORF1ab/nsp3551G551RGgaAga178181All0.000034
ORF1ab/nsp3551G551RGgaCga3181All0.000001
ORF1ab/nsp3551G551del1Gga-ga9898AY.440.000597
ORF1ab/nsp3551G551del1Gga-ga6969B.1.20.000608
ORF1ab/nsp3551G551RGgaAga5252AY.190.059293
ORF1ab/nsp3551G551GggAggG3251B.1.1.70.000029
ORF1ab/nsp3551G551GggAggC1951B.1.1.70.000017
ORF1ab/nsp3551G551delGGA---4747All0.000009
ORF1ab/nsp3551G551del1Gga-ga3838AY.1030.000236
ORF1ab/nsp3551G551del1Gga-ga3434AY.120.10.010915
ORF1ab/nsp3551G551RGgaAga3434B.1.1.70.00003
ORF1ab/nsp3551G551GggAggG3134B.1.617.20.000117
ORF1ab/nsp3551G551GggAggC234B.1.617.20.000008
ORF1ab/nsp3551G551GggAggT134B.1.617.20.000004
ORF1ab/nsp3551G551GggAggC2626B.1.416.10.040625
ORF1ab/nsp3551G551VgGagTa2525All0.000005
ORF1ab/nsp3551G551RGgaAga2425AY.40.000037
ORF1ab/nsp3551G551RGgaCga125AY.40.000002
ORF1ab/nsp3551G551delGGA---2525B.1.1.70.000022
ORF1ab/nsp3551G551EgGagAa2121All0.000004
ORF1ab/nsp3551G551GggAggG1819B.1.20.000158
ORF1ab/nsp3551G551GggAggC119B.1.20.000009
ORF1ab/nsp3551G551del1Gga-ga1919B.1.617.20.000072
ORF1ab/nsp3551G551del1Gga-ga1818AY.30.000179
ORF1ab/nsp3551G551GggAggG1717B.1.1.2910.012621
ORF1ab/nsp3551G551GggAggG1717B.1.5480.607143
ORF1ab/nsp3551G551XGgaTga1616All0.000003
ORF1ab/nsp3551G551GggAggG1616AY.1000.000736
ORF1ab/nsp3551G551GggAggG1213AY.1030.000075
ORF1ab/nsp3551G551GggAggC113AY.1030.000006
ORF1ab/nsp3551G551RGgaAga1212AY.390.000297
ORF1ab/nsp3551G551del1Gga-ga1212B.1.1.70.000011
ORF1ab/nsp3551G551GggAggG1111B.1.1.3400.5
ORF1ab/nsp3551G551RGgaAga1111B.1.617.20.000041
ORF1ab/nsp3551G551GggAggG1010B.1.10.000181
ORF1ab/nsp3551G551del1Gga-ga99AY.250.000054
ORF1ab/nsp3551G551EgGagAa99B.1.1.70.000008
ORF1ab/nsp3551G551GggAggG99B.1.1770.000119
ORF1ab/nsp3551G551GggAggG88AY.1090.005917
ORF1ab/nsp3551G551RGgaAga88AY.30.00008
ORF1ab/nsp3551G551GggAggG77AY.430.000031
ORF1ab/nsp3551G551RGgaAga77C.350.005418
ORF1ab/nsp3551G551GggAggG66AY.1080.006615
ORF1ab/nsp3551G551GggAggG56AY.40.000008
ORF1ab/nsp3551G551GggAggC16AY.40.000002
ORF1ab/nsp3551G551GggAggT66AY.680.001642
ORF1ab/nsp3551G551EgGagAa55AY.430.000022
ORF1ab/nsp3551G551RGgaAga55B.1.1770.000066
ORF1ab/nsp3551G551LGGaTTa44All0.000001
ORF1ab/nsp3551G551del1Gga-ga44AY.1190.000141
ORF1ab/nsp3551G551del1Gga-ga44AY.260.000113
ORF1ab/nsp3551G551delGGA---44AY.4.50.00043
ORF1ab/nsp3551G551VgGagTa44AY.430.000018
ORF1ab/nsp3551G551GggAggG24AY.440.000012
ORF1ab/nsp3551G551GggAggC14AY.440.000006
ORF1ab/nsp3551G551GggAggT14AY.440.000006
ORF1ab/nsp3551G551del1Gga-ga44AY.540.000381
ORF1ab/nsp3551G551delGGA---44B.1.1770.000053
ORF1ab/nsp3551G551GggAggG44B.1.177.570.001124
ORF1ab/nsp3551G551VgGagTa44B.1.617.20.000015
ORF1ab/nsp3551G551GggAggT13AY.250.000006
ORF1ab/nsp3551G551GggAggC13AY.250.000006
ORF1ab/nsp3551G551GggAggG13AY.250.000006
ORF1ab/nsp3551G551delGGA---33AY.40.000005
ORF1ab/nsp3551G551del1Gga-ga33AY.470.000093
ORF1ab/nsp3551G551VgGagTa33B.10.000027
ORF1ab/nsp3551G551XGgaTga33B.10.000027
ORF1ab/nsp3551G551del1Gga-ga23B.10.000018
ORF1ab/nsp3551G551del1ggAgg-13B.10.000009
ORF1ab/nsp3551G551GggAggG33B.1.177.430.004431
ORF1ab/nsp3551G551GggAggG23B.1.4270.000101
ORF1ab/nsp3551G551GggAggT13B.1.4270.00005
ORF1ab/nsp3551G551GggAggG23B.1.4290.000047
ORF1ab/nsp3551G551GggAggT13B.1.4290.000024
ORF1ab/nsp3551G551del1Gga-ga220.111111
ORF1ab/nsp3551G551PGGaCCa22All0
ORF1ab/nsp3551G551GggAggC22AY.1020.000053
ORF1ab/nsp3551G551RGgaAga22AY.1110.000366
ORF1ab/nsp3551G551del1Gga-ga22AY.1200.000074
ORF1ab/nsp3551G551GggAggG12AY.1200.000037
ORF1ab/nsp3551G551GggAggC12AY.1200.000037
ORF1ab/nsp3551G551del1Gga-ga22AY.140.000176
ORF1ab/nsp3551G551del1Gga-ga22AY.20.000712
ORF1ab/nsp3551G551GggAggG22AY.230.000139
ORF1ab/nsp3551G551RGgaAga22AY.260.000057
ORF1ab/nsp3551G551RGgaAga22AY.3.10.000171
ORF1ab/nsp3551G551GggAggG22AY.340.000194
ORF1ab/nsp3551G551GggAggG22AY.370.000632
ORF1ab/nsp3551G551del1Gga-ga22AY.390.000049
ORF1ab/nsp3551G551LGGaTTa22AY.430.000009
ORF1ab/nsp3551G551XGgaTga22AY.430.000009
ORF1ab/nsp3551G551XGgaTga22AY.440.000012
ORF1ab/nsp3551G551GggAggC12B.10.000009
ORF1ab/nsp3551G551GggAggG12B.10.000009
ORF1ab/nsp3551G551RGgaAga12B.1.10.000018
ORF1ab/nsp3551G551RGgaCga12B.1.10.000018
ORF1ab/nsp3551G551GggAggG22B.1.1.370.000386
ORF1ab/nsp3551G551del1Gga-ga22B.1.1.5190.000079
ORF1ab/nsp3551G551VgGagTa22B.1.1.70.000002
ORF1ab/nsp3551G551del1Gga-ga22B.1.110.30.001437
ORF1ab/nsp3551G551GggAggG22B.1.177.540.001213
ORF1ab/nsp3551G551EgGagAa22B.1.20.000018
ORF1ab/nsp3551G551del1Gga-ga22B.1.4260.002018
ORF1ab/nsp3551G551RGgaAga22B.1.4280.002041
ORF1ab/nsp3551G551VgGagTa22B.1.5960.000174
ORF1ab/nsp3551G551RGgaAga12B.1.5960.000087
ORF1ab/nsp3551G551RGgaCga12B.1.5960.000087
ORF1ab/nsp3551G551delGGA---22B.1.617.20.000008
ORF1ab/nsp3551G551GggAggG22B.1.6200.001892
ORF1ab/nsp3551G551XGgaTga22D.20.00015
ORF1ab/nsp3551G551VgGagTa11A0.000387
ORF1ab/nsp3551G551GggAggG11A.23.10.000704
ORF1ab/nsp3551G551GggAggG11AE.20.058824
ORF1ab/nsp3551G551AgGagCa11All0
ORF1ab/nsp3551G551del2GGa--a11All0
ORF1ab/nsp3551G551delGGA---11AY.1110.000183
ORF1ab/nsp3551G551del1Gga-ga11AY.1130.000142
ORF1ab/nsp3551G551RGgaAga11AY.1190.000035
ORF1ab/nsp3551G551XGgaTga11AY.120.10.000321
ORF1ab/nsp3551G551RGgaAga11AY.120.2.10.000498
ORF1ab/nsp3551G551del1Gga-ga11AY.200.000039
ORF1ab/nsp3551G551PGGaCCa11AY.230.00007
ORF1ab/nsp3551G551delGGA---11AY.250.000006
ORF1ab/nsp3551G551GggAggG11AY.260.000028
ORF1ab/nsp3551G551GggAggC11AY.270.000065
ORF1ab/nsp3551G551GggAggC11AY.290.000016
ORF1ab/nsp3551G551GggAggC11AY.300.000396
ORF1ab/nsp3551G551RGgaAga11AY.330.000067
ORF1ab/nsp3551G551GggAggG11AY.34.10.00051
ORF1ab/nsp3551G551del2GGa--a11AY.40.000002
ORF1ab/nsp3551G551EgGagAa11AY.40.000002
ORF1ab/nsp3551G551RGgaAga11AY.4.20.000022
ORF1ab/nsp3551G551GggAggC11AY.420.00004
ORF1ab/nsp3551G551delGGA---11AY.430.000004
ORF1ab/nsp3551G551RGgaAga11AY.430.000004
ORF1ab/nsp3551G551EgGagAa11AY.440.000006
ORF1ab/nsp3551G551RGgaAga11AY.440.000006
ORF1ab/nsp3551G551GggAggC11AY.460.000104
ORF1ab/nsp3551G551XGgaTga11AY.46.20.000635
ORF1ab/nsp3551G551RGgaAga11AY.46.50.000198
ORF1ab/nsp3551G551GggAggG11AY.46.60.000072
ORF1ab/nsp3551G551RGgaAga11AY.50.000021
ORF1ab/nsp3551G551GggAggG11AY.5.30.000337
ORF1ab/nsp3551G551VgGagTa11AY.520.000814
ORF1ab/nsp3551G551VgGagTa11AY.60.000041
ORF1ab/nsp3551G551GggAggG11AY.610.000105
ORF1ab/nsp3551G551del1Gga-ga11AY.670.000464
ORF1ab/nsp3551G551del1Gga-ga11AY.710.000475
ORF1ab/nsp3551G551del1Gga-ga11AY.790.001211
ORF1ab/nsp3551G551del1Gga-ga11AY.810.001992
ORF1ab/nsp3551G551RGgaAga11AY.860.00083
ORF1ab/nsp3551G551GggAggG11AY.90.000068
ORF1ab/nsp3551G551del1Gga-ga11AY.9.20.000037
ORF1ab/nsp3551G551GggAggG11AY.98.10.000048
ORF1ab/nsp3551G551VgGagTa11B0.000128
ORF1ab/nsp3551G551XGgaTga11B0.000128
ORF1ab/nsp3551G551LGGaTTa11B0.000128
ORF1ab/nsp3551G551GggAggT11B0.000128
ORF1ab/nsp3551G551del1Gga-ga11B.1.10.000018
ORF1ab/nsp3551G551GggAggG11B.1.1.1590.004673
ORF1ab/nsp3551G551XGgaTga11B.1.1.2160.00089
ORF1ab/nsp3551G551GggAggC11B.1.1.2850.006536
ORF1ab/nsp3551G551delGGA---11B.1.1.3110.000358
ORF1ab/nsp3551G551RGgaAga11B.1.1.3170.000412
ORF1ab/nsp3551G551EgGagAa11B.1.1.3180.000302
ORF1ab/nsp3551G551GggAggG11B.1.1.3710.010417
ORF1ab/nsp3551G551VgGagTa11B.1.1.4090.002833
ORF1ab/nsp3551G551GggAggG11B.1.1.4090.002833
ORF1ab/nsp3551G551delGGA---11B.1.1.5190.00004
ORF1ab/nsp3551G551AgGagCa11B.1.1.70.000001
ORF1ab/nsp3551G551EgGagAa11B.1.1260.001276
ORF1ab/nsp3551G551VgGagTa11B.1.1600.000031
ORF1ab/nsp3551G551delGGA---11B.1.1600.000031
ORF1ab/nsp3551G551delGGA---11B.1.177.630.002703
ORF1ab/nsp3551G551GggAggC11B.1.177.690.001484
ORF1ab/nsp3551G551GggAggG11B.1.177.770.000726
ORF1ab/nsp3551G551del1Gga-ga11B.1.2340.000132
ORF1ab/nsp3551G551GggAggG11B.1.2340.000132
ORF1ab/nsp3551G551RGgaAga11B.1.2430.00007
ORF1ab/nsp3551G551VgGagTa11B.1.2430.00007
ORF1ab/nsp3551G551VgGagTa11B.1.2580.000067
ORF1ab/nsp3551G551VgGagTa11B.1.3010.005917
ORF1ab/nsp3551G551LGGaTTa11B.1.3010.005917
ORF1ab/nsp3551G551XGgaTga11B.1.3010.005917
ORF1ab/nsp3551G551del1Gga-ga11B.1.3240.001605
ORF1ab/nsp3551G551RGgaAga11B.1.3490.000715
ORF1ab/nsp3551G551RGgaAga11B.1.3510.00003
ORF1ab/nsp3551G551delGGA---11B.1.360.000146
ORF1ab/nsp3551G551GggAggC11B.1.36.310.001751
ORF1ab/nsp3551G551GggAggG11B.1.3690.000285
ORF1ab/nsp3551G551XGgaTga11B.1.3770.004566
ORF1ab/nsp3551G551del1Gga-ga11B.1.3770.004566
ORF1ab/nsp3551G551delGGA---11B.1.4150.014286
ORF1ab/nsp3551G551RGgaAga11B.1.4250.002994
ORF1ab/nsp3551G551GggAggG11B.1.4280.00102
ORF1ab/nsp3551G551EgGagAa11B.1.4290.000024
ORF1ab/nsp3551G551GggAggG11B.1.5030.002488
ORF1ab/nsp3551G551GggAggG11B.1.5250.000113
ORF1ab/nsp3551G551del1Gga-ga11B.1.5260.000024
ORF1ab/nsp3551G551del1Gga-ga11B.1.5760.000907
ORF1ab/nsp3551G551XGgaTga11B.1.5950.000261
ORF1ab/nsp3551G551del1Gga-ga11B.1.5960.000087
ORF1ab/nsp3551G551PGGaCCa11B.1.617.10.000129
ORF1ab/nsp3551G551VgGagTa11B.1.6230.000536
ORF1ab/nsp3551G551GggAggG11B.1.6370.000073
ORF1ab/nsp3551G551GggAggG11P.10.000016
ORF1ab/nsp3551G551GggAggG11P.1.100.000269
ORF1ab/nsp3551G551RGgaAga11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.