CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 550 & Codon = ctA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3550L550LL1368LsynctTctA8042220.2761194367-4369

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3550L550LctTctA222804All0.000042
ORF1ab/nsp3550L550LctTctA95104AY.1030.00059
ORF1ab/nsp3550L550LctTctA6771AY.430.000297
ORF1ab/nsp3550L550LctTctA460AY.30.00004
ORF1ab/nsp3550L550LctTctA124B.10.000009
ORF1ab/nsp3550L550LctTctA616B.1.1.70.000005
ORF1ab/nsp3550L550LctTctA514AY.40.000008
ORF1ab/nsp3550L550LctTctA77AY.1190.000247
ORF1ab/nsp3550L550LctTctA26AY.250.000012
ORF1ab/nsp3550L550LctTctA55AY.610.000524
ORF1ab/nsp3550L550LctTctA14AY.330.000067
ORF1ab/nsp3550L550LctTctA34AY.350.000699
ORF1ab/nsp3550L550LctTctA44B.1.3750.003279
ORF1ab/nsp3550L550LctTctA33B.1.1600.000094
ORF1ab/nsp3550L550LctTctA23C.370.000232
ORF1ab/nsp3550L550LctTctA12AY.270.000065
ORF1ab/nsp3550L550LctTctA22AY.440.000012
ORF1ab/nsp3550L550LctTctA12AY.540.000095
ORF1ab/nsp3550L550LctTctA22B.1.1.3260.003521
ORF1ab/nsp3550L550LctTctA22C.360.001821
ORF1ab/nsp3550L550LctTctA11AY.1130.000142
ORF1ab/nsp3550L550LctTctA11AY.160.00038
ORF1ab/nsp3550L550LctTctA11AY.70.000196
ORF1ab/nsp3550L550LctTctA11AY.850.000427
ORF1ab/nsp3550L550LctTctA11B.1.1.630.000386
ORF1ab/nsp3550L550LctTctA11B.1.4290.000024
ORF1ab/nsp3550L550LctTctA11B.400.000364
ORF1ab/nsp3550L550LctTctA11B.6.60.000889
ORF1ab/nsp3550L550LctTctA11Q.30.000145