CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 550

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3550L550LL1368LsynctTctC8045560.6915424367-4369
ORF1ab/nsp3550L550LL1368LsynctTctA8042220.2761194367-4369
ORF1ab/nsp3550L550LL1368LsynctTctG804160.01990054367-4369
ORF1ab/nsp3550L550LL1368LsynCtTTtG80490.0111944367-4369
ORF1ab/nsp3550L550LL1368LsynCtTTtA80410.001243784367-4369
ORF1ab/nsp3550L550IL1368InonsynCttAtt13013014367-4369
ORF1ab/nsp3550L550FL1368FnonsynCttTtt535314367-4369
ORF1ab/nsp3550L550delL1368deldelCTT---494914367-4369
ORF1ab/nsp3550L550del1L1368del1delCtt-tt1360.4615384367-4369
ORF1ab/nsp3550L550del1L1368del1delctTct-1330.2307694367-4369
ORF1ab/nsp3550L550del1L1368del1delcTtc-t1320.1538464367-4369
ORF1ab/nsp3550L550del1L1368del1delCtTTt-1320.1538464367-4369
ORF1ab/nsp3550L550PL1368PnonsyncTtcCt6614367-4369
ORF1ab/nsp3550L550VL1368VnonsynCttGtt6614367-4369
ORF1ab/nsp3550L550RL1368RnonsyncTtcGt430.754367-4369
ORF1ab/nsp3550L550RL1368RnonsyncTTcGC410.254367-4369
ORF1ab/nsp3550L550del2L1368del2delCTt--t1114367-4369
ORF1ab/nsp3550L550SL1368SnonsynCTtTCt1114367-4369

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3550L550LctTctC556804All0.000106
ORF1ab/nsp3550L550LctTctA222804All0.000042
ORF1ab/nsp3550L550LctTctG16804All0.000003
ORF1ab/nsp3550L550LCtTTtG9804All0.000002
ORF1ab/nsp3550L550LCtTTtA1804All0
ORF1ab/nsp3550L550LctTctC323323B.1.1.2800.996914
ORF1ab/nsp3550L550ICttAtt130130All0.000025
ORF1ab/nsp3550L550LctTctA95104AY.1030.00059
ORF1ab/nsp3550L550LctTctC9104AY.1030.000056
ORF1ab/nsp3550L550ICttAtt9090B.1.20.000792
ORF1ab/nsp3550L550LctTctA6771AY.430.000297
ORF1ab/nsp3550L550LctTctC271AY.430.000009
ORF1ab/nsp3550L550LctTctG271AY.430.000009
ORF1ab/nsp3550L550LctTctC5660AY.30.000557
ORF1ab/nsp3550L550LctTctA460AY.30.00004
ORF1ab/nsp3550L550LctTctC5656AY.1110.010256
ORF1ab/nsp3550L550FCttTtt5353All0.00001
ORF1ab/nsp3550L550delCTT---4949All0.000009
ORF1ab/nsp3550L550delCTT---2525B.1.1.70.000022
ORF1ab/nsp3550L550LctTctC2224B.10.000202
ORF1ab/nsp3550L550LctTctG124B.10.000009
ORF1ab/nsp3550L550LctTctA124B.10.000009
ORF1ab/nsp3550L550ICttAtt1717B.1.1.70.000015
ORF1ab/nsp3550L550LctTctC916B.1.1.70.000008
ORF1ab/nsp3550L550LctTctA616B.1.1.70.000005
ORF1ab/nsp3550L550LctTctG116B.1.1.70.000001
ORF1ab/nsp3550L550LctTctC914AY.40.000014
ORF1ab/nsp3550L550LctTctA514AY.40.000008
ORF1ab/nsp3550L550del1Ctt-tt613All0.000001
ORF1ab/nsp3550L550del1ctTct-313All0.000001
ORF1ab/nsp3550L550del1cTtc-t213All0
ORF1ab/nsp3550L550del1CtTTt-213All0
ORF1ab/nsp3550L550LctTctC1313AY.5.40.003597
ORF1ab/nsp3550L550FCttTtt1111AY.340.001067
ORF1ab/nsp3550L550LctTctA77AY.1190.000247
ORF1ab/nsp3550L550LCtTTtG77AY.140.000616
ORF1ab/nsp3550L550FCttTtt77B.1.1.70.000006
ORF1ab/nsp3550L550PcTtcCt66All0.000001
ORF1ab/nsp3550L550VCttGtt66All0.000001
ORF1ab/nsp3550L550LctTctC26AY.250.000012
ORF1ab/nsp3550L550LctTctG26AY.250.000012
ORF1ab/nsp3550L550LctTctA26AY.250.000012
ORF1ab/nsp3550L550LctTctC55AD.20.001095
ORF1ab/nsp3550L550FCttTtt55AY.40.000008
ORF1ab/nsp3550L550delCTT---55AY.40.000008
ORF1ab/nsp3550L550LctTctA55AY.610.000524
ORF1ab/nsp3550L550ICttAtt55B.10.000046
ORF1ab/nsp3550L550LctTctC45B.1.20.000035
ORF1ab/nsp3550L550LctTctG15B.1.20.000009
ORF1ab/nsp3550L550LctTctC55B.1.5750.001517
ORF1ab/nsp3550L550FCttTtt55B.1.617.20.000019
ORF1ab/nsp3550L550RcTtcGt34All0.000001
ORF1ab/nsp3550L550RcTTcGC14All0
ORF1ab/nsp3550L550LctTctC34AY.330.0002
ORF1ab/nsp3550L550LctTctA14AY.330.000067
ORF1ab/nsp3550L550LctTctA34AY.350.000699
ORF1ab/nsp3550L550LctTctC14AY.350.000233
ORF1ab/nsp3550L550delCTT---44AY.4.50.00043
ORF1ab/nsp3550L550delCTT---44B.1.1770.000053
ORF1ab/nsp3550L550LctTctC44B.1.177.810.000757
ORF1ab/nsp3550L550LctTctA44B.1.3750.003279
ORF1ab/nsp3550L550FCttTtt33AY.1190.000106
ORF1ab/nsp3550L550del1Ctt-tt13AY.440.000006
ORF1ab/nsp3550L550del1CtTTt-13AY.440.000006
ORF1ab/nsp3550L550del1cTtc-t13AY.440.000006
ORF1ab/nsp3550L550FCttTtt33B.10.000027
ORF1ab/nsp3550L550FCttTtt33B.1.10.000054
ORF1ab/nsp3550L550PcTtcCt33B.1.1.70.000003
ORF1ab/nsp3550L550LctTctA33B.1.1600.000094
ORF1ab/nsp3550L550ICttAtt33B.1.2340.000396
ORF1ab/nsp3550L550LctTctC33B.1.360.000438
ORF1ab/nsp3550L550LctTctC33B.1.4700.004213
ORF1ab/nsp3550L550LctTctC33B.1.617.20.000011
ORF1ab/nsp3550L550LctTctA23C.370.000232
ORF1ab/nsp3550L550LctTctC13C.370.000116
ORF1ab/nsp3550L550ICttAtt22AY.1030.000012
ORF1ab/nsp3550L550LctTctC22AY.240.000862
ORF1ab/nsp3550L550LctTctG12AY.270.000065
ORF1ab/nsp3550L550LctTctA12AY.270.000065
ORF1ab/nsp3550L550LctTctC22AY.370.000632
ORF1ab/nsp3550L550VCttGtt22AY.40.000003
ORF1ab/nsp3550L550LctTctA22AY.440.000012
ORF1ab/nsp3550L550FCttTtt22AY.440.000012
ORF1ab/nsp3550L550LctTctG12AY.46.60.000072
ORF1ab/nsp3550L550LctTctC12AY.46.60.000072
ORF1ab/nsp3550L550LCtTTtG12AY.540.000095
ORF1ab/nsp3550L550LctTctA12AY.540.000095
ORF1ab/nsp3550L550RcTtcGt12B.10.000009
ORF1ab/nsp3550L550RcTTcGC12B.10.000009
ORF1ab/nsp3550L550LctTctA22B.1.1.3260.003521
ORF1ab/nsp3550L550LctTctC22B.1.1.330.000842
ORF1ab/nsp3550L550del1ctTct-22B.1.1.70.000002
ORF1ab/nsp3550L550LctTctC22B.1.1770.000026
ORF1ab/nsp3550L550FCttTtt22B.1.1770.000026
ORF1ab/nsp3550L550LCtTTtG12B.1.258.170.000104
ORF1ab/nsp3550L550LctTctC12B.1.258.170.000104
ORF1ab/nsp3550L550FCttTtt22B.1.360.000292
ORF1ab/nsp3550L550LctTctG22B.1.466.20.000782
ORF1ab/nsp3550L550delCTT---22B.1.617.20.000008
ORF1ab/nsp3550L550ICttAtt22B.1.617.20.000008
ORF1ab/nsp3550L550del1Ctt-tt22B.1.617.20.000008
ORF1ab/nsp3550L550LctTctA22C.360.001821
ORF1ab/nsp3550L550LctTctC22P.10.000032
ORF1ab/nsp3550L550ICttAtt11A.2.50.000499
ORF1ab/nsp3550L550del2CTt--t11All0
ORF1ab/nsp3550L550SCTtTCt11All0
ORF1ab/nsp3550L550LctTctC11AU.20.002421
ORF1ab/nsp3550L550LctTctC11AY.1020.000027
ORF1ab/nsp3550L550PcTtcCt11AY.1030.000006
ORF1ab/nsp3550L550delCTT---11AY.1110.000183
ORF1ab/nsp3550L550LctTctA11AY.1130.000142
ORF1ab/nsp3550L550del1Ctt-tt11AY.1200.000037
ORF1ab/nsp3550L550LctTctA11AY.160.00038
ORF1ab/nsp3550L550VCttGtt11AY.200.000039
ORF1ab/nsp3550L550VCttGtt11AY.230.00007
ORF1ab/nsp3550L550delCTT---11AY.250.000006
ORF1ab/nsp3550L550del1cTtc-t11AY.30.00001
ORF1ab/nsp3550L550LctTctG11AY.3.10.000085
ORF1ab/nsp3550L550ICttAtt11AY.360.000148
ORF1ab/nsp3550L550RcTtcGt11AY.390.000025
ORF1ab/nsp3550L550PcTtcCt11AY.40.000002
ORF1ab/nsp3550L550LctTctC11AY.4.50.000107
ORF1ab/nsp3550L550del1ctTct-11AY.430.000004
ORF1ab/nsp3550L550FCttTtt11AY.430.000004
ORF1ab/nsp3550L550SCTtTCt11AY.440.000006
ORF1ab/nsp3550L550ICttAtt11AY.440.000006
ORF1ab/nsp3550L550delCTT---11AY.440.000006
ORF1ab/nsp3550L550LctTctC11AY.460.000104
ORF1ab/nsp3550L550FCttTtt11AY.460.000104
ORF1ab/nsp3550L550FCttTtt11AY.470.000031
ORF1ab/nsp3550L550del1Ctt-tt11AY.470.000031
ORF1ab/nsp3550L550LctTctC11AY.480.000465
ORF1ab/nsp3550L550ICttAtt11AY.520.000814
ORF1ab/nsp3550L550LctTctC11AY.660.00107
ORF1ab/nsp3550L550del1Ctt-tt11AY.670.000464
ORF1ab/nsp3550L550LctTctA11AY.70.000196
ORF1ab/nsp3550L550LctTctA11AY.850.000427
ORF1ab/nsp3550L550LctTctC11AY.920.000287
ORF1ab/nsp3550L550ICttAtt11B0.000128
ORF1ab/nsp3550L550RcTtcGt11B.1.10.000018
ORF1ab/nsp3550L550LctTctG11B.1.10.000018
ORF1ab/nsp3550L550FCttTtt11B.1.1.10.000327
ORF1ab/nsp3550L550ICttAtt11B.1.1.1230.017857
ORF1ab/nsp3550L550LctTctG11B.1.1.1740.003378
ORF1ab/nsp3550L550ICttAtt11B.1.1.3060.000438
ORF1ab/nsp3550L550delCTT---11B.1.1.3110.000358
ORF1ab/nsp3550L550delCTT---11B.1.1.5190.00004
ORF1ab/nsp3550L550LctTctA11B.1.1.630.000386
ORF1ab/nsp3550L550del2CTt--t11B.1.1.70.000001
ORF1ab/nsp3550L550delCTT---11B.1.1600.000031
ORF1ab/nsp3550L550ICttAtt11B.1.1600.000031
ORF1ab/nsp3550L550FCttTtt11B.1.177.160.000664
ORF1ab/nsp3550L550FCttTtt11B.1.177.210.000076
ORF1ab/nsp3550L550LctTctC11B.1.177.60.000977
ORF1ab/nsp3550L550LctTctC11B.1.177.600.000218
ORF1ab/nsp3550L550delCTT---11B.1.177.630.002703
ORF1ab/nsp3550L550LctTctC11B.1.177.860.000183
ORF1ab/nsp3550L550del1CtTTt-11B.1.20.000009
ORF1ab/nsp3550L550FCttTtt11B.1.20.000009
ORF1ab/nsp3550L550FCttTtt11B.1.2340.000132
ORF1ab/nsp3550L550LCtTTtA11B.1.2370.004975
ORF1ab/nsp3550L550VCttGtt11B.1.3370.005587
ORF1ab/nsp3550L550delCTT---11B.1.360.000146
ORF1ab/nsp3550L550delCTT---11B.1.4150.014286
ORF1ab/nsp3550L550LctTctA11B.1.4290.000024
ORF1ab/nsp3550L550FCttTtt11B.1.5260.000024
ORF1ab/nsp3550L550ICttAtt11B.1.5760.000907
ORF1ab/nsp3550L550ICttAtt11B.1.5960.000087
ORF1ab/nsp3550L550LctTctC11B.1.5960.000087
ORF1ab/nsp3550L550FCttTtt11B.1.5960.000087
ORF1ab/nsp3550L550LctTctG11B.1.5970.00463
ORF1ab/nsp3550L550VCttGtt11B.1.617.10.000129
ORF1ab/nsp3550L550LctTctA11B.400.000364
ORF1ab/nsp3550L550LctTctA11B.6.60.000889
ORF1ab/nsp3550L550ICttAtt11B.6.60.000889
ORF1ab/nsp3550L550LctTctG11D.20.000075
ORF1ab/nsp3550L550PcTtcCt11D.20.000075
ORF1ab/nsp3550L550LctTctA11Q.30.000145