CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 543 | S543P | S1361P | nonsyn | Tct | Cct | 10016 | 10016 | 1 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543F | S1361F | nonsyn | tCt | tTt | 934 | 934 | 1 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543S | S1361S | syn | tcT | tcC | 175 | 125 | 0.714286 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543S | S1361S | syn | tcT | tcG | 175 | 38 | 0.217143 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543S | S1361S | syn | tcT | tcA | 175 | 12 | 0.0685714 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543A | S1361A | nonsyn | Tct | Gct | 63 | 63 | 1 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543Y | S1361Y | nonsyn | tCt | tAt | 38 | 38 | 1 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543del | S1361del | del | TCT | --- | 33 | 33 | 1 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543T | S1361T | nonsyn | Tct | Act | 21 | 21 | 1 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543C | S1361C | nonsyn | tCt | tGt | 12 | 12 | 1 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543del1 | S1361del1 | del | Tct | -ct | 2 | 1 | 0.5 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543del1 | S1361del1 | del | TCT | CT- | 2 | 1 | 0.5 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543L | S1361L | nonsyn | TCt | CTt | 1 | 1 | 1 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543del2 | S1361del2 | del | tCT | t-- | 1 | 1 | 1 | 4346-4348 |
ORF1ab/nsp3 | 543 | S543D | S1361D | nonsyn | TCt | GAt | 1 | 1 | 1 | 4346-4348 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 10016 | 10016 | All | 0.001916 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 9310 | 9310 | B.1.1.284 | 0.999893 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 934 | 934 | All | 0.000179 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 315 | 315 | B.1.1.7 | 0.000282 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 203 | 203 | AY.47 | 0.006314 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 125 | 175 | All | 0.000024 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcG | 38 | 175 | All | 0.000007 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcA | 12 | 175 | All | 0.000002 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 126 | 126 | B.1.1 | 0.002286 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 63 | 63 | All | 0.000012 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 61 | 61 | AY.103 | 0.000379 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 60 | 60 | B.1.526 | 0.00141 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 49 | 49 | B.1.243 | 0.00341 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 49 | 49 | B.1.617.2 | 0.000185 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 44 | 44 | AY.120 | 0.001636 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 37 | 43 | B.1.1.7 | 0.000033 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcG | 4 | 43 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcA | 2 | 43 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 38 | 38 | All | 0.000007 |
ORF1ab/nsp3 | 543 | S543del | TCT | --- | 33 | 33 | All | 0.000006 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcG | 31 | 33 | B.1.427 | 0.001565 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 2 | 33 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 32 | 32 | P.1 | 0.000504 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 31 | 31 | B.1.617.2 | 0.000117 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 30 | 30 | B.1.1.160 | 0.714286 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 24 | 24 | B.1.2 | 0.000211 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 23 | 23 | B.1 | 0.000211 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 23 | 23 | P.1.7 | 0.007344 |
ORF1ab/nsp3 | 543 | S543T | Tct | Act | 21 | 21 | All | 0.000004 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 21 | 21 | B.1.36 | 0.003064 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 20 | 20 | AY.43 | 0.000089 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 18 | 18 | AY.8 | 0.010909 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 18 | 18 | B.1.429 | 0.000424 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 18 | 18 | B.1.637 | 0.001315 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 17 | 17 | AY.102 | 0.000451 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 14 | 16 | AY.4 | 0.000022 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcA | 2 | 16 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 543 | S543del | TCT | --- | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 15 | 15 | B.1.177.62 | 0.017878 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 15 | 15 | B.1.36.29 | 0.00776 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 14 | 14 | AD.2 | 0.003065 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 13 | 13 | B.1.221 | 0.000923 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 13 | 13 | B.1.525 | 0.001471 |
ORF1ab/nsp3 | 543 | S543C | tCt | tGt | 12 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 11 | 11 | P.1.14 | 0.000526 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 9 | 9 | AY.100 | 0.000414 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 543 | S543C | tCt | tGt | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 8 | 8 | B.1.1.135 | 0.037559 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 7 | 7 | AY.1 | 0.00277 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 7 | 7 | AY.52 | 0.0057 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 6 | 6 | B.1.1.369 | 0.002677 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 4 | 6 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcG | 2 | 6 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 543 | S543T | Tct | Act | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 543 | S543del | TCT | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 3 | 4 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcG | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcA | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 543 | S543T | Tct | Act | 4 | 4 | B.1.1.170 | 0.004988 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 543 | S543T | Tct | Act | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcA | 2 | 3 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 3 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp3 | 543 | S543del | TCT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 3 | 3 | AY.96 | 0.006224 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 3 | 3 | B.1.1.207 | 0.003546 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 3 | 3 | B.1.1.253 | 0.007519 |
ORF1ab/nsp3 | 543 | S543T | Tct | Act | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 543 | S543del | TCT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 543 | S543del1 | TCT | CT- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 543 | S543del1 | Tct | -ct | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 2 | 2 | AY.49 | 0.00639 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 543 | S543T | Tct | Act | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 2 | 2 | B.1.1.56 | 0.035714 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 543 | S543C | tCt | tGt | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 2 | 2 | W.1 | 0.017391 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 543 | S543del2 | tCT | t-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 543 | S543L | TCt | CTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 543 | S543D | TCt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 543 | S543del | TCT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 543 | S543del | TCT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 543 | S543del1 | TCT | CT- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 543 | S543C | tCt | tGt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 543 | S543L | TCt | CTt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 543 | S543T | Tct | Act | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 543 | S543del1 | Tct | -ct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.1.366 | 0.015873 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 543 | S543del | TCT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 543 | S543del2 | tCT | t-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 543 | S543del | TCT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.294 | 0.032258 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcA | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 543 | S543del | TCT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 543 | S543del | TCT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 543 | S543T | Tct | Act | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 543 | S543D | TCt | GAt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp3 | 543 | S543Y | tCt | tAt | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 543 | S543del | TCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 543 | S543S | tcT | tcC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp3 | 543 | S543C | tCt | tGt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 543 | S543T | Tct | Act | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 543 | S543A | Tct | Gct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 543 | S543F | tCt | tTt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 543 | S543T | Tct | Act | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 543 | S543P | Tct | Cct | 1 | 1 | P.1.14 | 0.000048 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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