CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 543

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3543S543PS1361PnonsynTctCct100161001614346-4348
ORF1ab/nsp3543S543FS1361FnonsyntCttTt93493414346-4348
ORF1ab/nsp3543S543SS1361SsyntcTtcC1751250.7142864346-4348
ORF1ab/nsp3543S543SS1361SsyntcTtcG175380.2171434346-4348
ORF1ab/nsp3543S543SS1361SsyntcTtcA175120.06857144346-4348
ORF1ab/nsp3543S543AS1361AnonsynTctGct636314346-4348
ORF1ab/nsp3543S543YS1361YnonsyntCttAt383814346-4348
ORF1ab/nsp3543S543delS1361deldelTCT---333314346-4348
ORF1ab/nsp3543S543TS1361TnonsynTctAct212114346-4348
ORF1ab/nsp3543S543CS1361CnonsyntCttGt121214346-4348
ORF1ab/nsp3543S543del1S1361del1delTct-ct210.54346-4348
ORF1ab/nsp3543S543del1S1361del1delTCTCT-210.54346-4348
ORF1ab/nsp3543S543LS1361LnonsynTCtCTt1114346-4348
ORF1ab/nsp3543S543del2S1361del2deltCTt--1114346-4348
ORF1ab/nsp3543S543DS1361DnonsynTCtGAt1114346-4348

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3543S543PTctCct1001610016All0.001916
ORF1ab/nsp3543S543PTctCct93109310B.1.1.2840.999893
ORF1ab/nsp3543S543FtCttTt934934All0.000179
ORF1ab/nsp3543S543FtCttTt315315B.1.1.70.000282
ORF1ab/nsp3543S543PTctCct203203AY.470.006314
ORF1ab/nsp3543S543StcTtcC125175All0.000024
ORF1ab/nsp3543S543StcTtcG38175All0.000007
ORF1ab/nsp3543S543StcTtcA12175All0.000002
ORF1ab/nsp3543S543PTctCct126126B.1.10.002286
ORF1ab/nsp3543S543ATctGct6363All0.000012
ORF1ab/nsp3543S543FtCttTt6161AY.1030.000379
ORF1ab/nsp3543S543PTctCct6060B.1.5260.00141
ORF1ab/nsp3543S543PTctCct4949B.1.2430.00341
ORF1ab/nsp3543S543FtCttTt4949B.1.617.20.000185
ORF1ab/nsp3543S543FtCttTt4444AY.1200.001636
ORF1ab/nsp3543S543StcTtcC3743B.1.1.70.000033
ORF1ab/nsp3543S543StcTtcG443B.1.1.70.000004
ORF1ab/nsp3543S543StcTtcA243B.1.1.70.000002
ORF1ab/nsp3543S543FtCttTt4141AY.40.000064
ORF1ab/nsp3543S543YtCttAt3838All0.000007
ORF1ab/nsp3543S543delTCT---3333All0.000006
ORF1ab/nsp3543S543StcTtcG3133B.1.4270.001565
ORF1ab/nsp3543S543StcTtcC233B.1.4270.000101
ORF1ab/nsp3543S543FtCttTt3232P.10.000504
ORF1ab/nsp3543S543PTctCct3131B.1.617.20.000117
ORF1ab/nsp3543S543PTctCct3030B.1.1.1600.714286
ORF1ab/nsp3543S543PTctCct2626B.1.1.70.000023
ORF1ab/nsp3543S543FtCttTt2424B.1.20.000211
ORF1ab/nsp3543S543PTctCct2323B.10.000211
ORF1ab/nsp3543S543FtCttTt2323P.1.70.007344
ORF1ab/nsp3543S543TTctAct2121All0.000004
ORF1ab/nsp3543S543PTctCct2121B.1.360.003064
ORF1ab/nsp3543S543FtCttTt2020AY.430.000089
ORF1ab/nsp3543S543YtCttAt1919B.1.1.70.000017
ORF1ab/nsp3543S543FtCttTt1818AY.80.010909
ORF1ab/nsp3543S543ATctGct1818B.1.1.70.000016
ORF1ab/nsp3543S543FtCttTt1818B.1.4290.000424
ORF1ab/nsp3543S543PTctCct1818B.1.6370.001315
ORF1ab/nsp3543S543FtCttTt1717AY.1020.000451
ORF1ab/nsp3543S543PTctCct1717AY.40.000026
ORF1ab/nsp3543S543StcTtcC1416AY.40.000022
ORF1ab/nsp3543S543StcTtcA216AY.40.000003
ORF1ab/nsp3543S543delTCT---1616B.1.1.70.000014
ORF1ab/nsp3543S543FtCttTt1515AY.250.00009
ORF1ab/nsp3543S543FtCttTt1515B.1.177.620.017878
ORF1ab/nsp3543S543FtCttTt1515B.1.36.290.00776
ORF1ab/nsp3543S543ATctGct1414AD.20.003065
ORF1ab/nsp3543S543FtCttTt1313B.1.2210.000923
ORF1ab/nsp3543S543FtCttTt1313B.1.5250.001471
ORF1ab/nsp3543S543CtCttGt1212All0.000002
ORF1ab/nsp3543S543FtCttTt1212AY.4.20.00026
ORF1ab/nsp3543S543FtCttTt1212B.1.1770.000158
ORF1ab/nsp3543S543StcTtcC1111B.1.5260.000259
ORF1ab/nsp3543S543FtCttTt1111P.1.140.000526
ORF1ab/nsp3543S543FtCttTt99AY.1000.000414
ORF1ab/nsp3543S543FtCttTt99B.10.000082
ORF1ab/nsp3543S543CtCttGt88B.10.000073
ORF1ab/nsp3543S543PTctCct88B.1.1.1350.037559
ORF1ab/nsp3543S543FtCttTt88B.1.2580.000532
ORF1ab/nsp3543S543FtCttTt77AY.10.00277
ORF1ab/nsp3543S543FtCttTt77AY.30.00007
ORF1ab/nsp3543S543FtCttTt77AY.520.0057
ORF1ab/nsp3543S543FtCttTt77B.1.5260.000165
ORF1ab/nsp3543S543StcTtcC77P.1.140.000335
ORF1ab/nsp3543S543PTctCct66AY.1030.000037
ORF1ab/nsp3543S543PTctCct66AY.1130.000854
ORF1ab/nsp3543S543FtCttTt66AY.440.000037
ORF1ab/nsp3543S543FtCttTt66B.1.1.3690.002677
ORF1ab/nsp3543S543FtCttTt66B.1.258.170.000624
ORF1ab/nsp3543S543StcTtcC46B.1.4290.000094
ORF1ab/nsp3543S543StcTtcG26B.1.4290.000047
ORF1ab/nsp3543S543StcTtcC66B.1.617.20.000023
ORF1ab/nsp3543S543PTctCct66B.1.6210.000531
ORF1ab/nsp3543S543FtCttTt55AY.1190.000177
ORF1ab/nsp3543S543FtCttTt55AY.260.000142
ORF1ab/nsp3543S543PTctCct55AY.46.60.000361
ORF1ab/nsp3543S543FtCttTt55AY.50.000103
ORF1ab/nsp3543S543TTctAct55B.1.2580.000333
ORF1ab/nsp3543S543PTctCct44AY.290.000063
ORF1ab/nsp3543S543delTCT---44AY.40.000006
ORF1ab/nsp3543S543StcTtcC34AY.440.000018
ORF1ab/nsp3543S543StcTtcG14AY.440.000006
ORF1ab/nsp3543S543FtCttTt44AY.470.000124
ORF1ab/nsp3543S543StcTtcA34B.10.000027
ORF1ab/nsp3543S543StcTtcC14B.10.000009
ORF1ab/nsp3543S543TTctAct44B.1.1.1700.004988
ORF1ab/nsp3543S543StcTtcC44B.1.1.5190.000159
ORF1ab/nsp3543S543StcTtcC44B.1.20.000035
ORF1ab/nsp3543S543FtCttTt44B.1.3510.000119
ORF1ab/nsp3543S543ATctGct44B.1.617.20.000015
ORF1ab/nsp3543S543FtCttTt33AD.20.000657
ORF1ab/nsp3543S543PTctCct33AD.20.000657
ORF1ab/nsp3543S543StcTtcC33AY.240.001293
ORF1ab/nsp3543S543StcTtcC33AY.250.000018
ORF1ab/nsp3543S543TTctAct33AY.370.000948
ORF1ab/nsp3543S543StcTtcA23AY.390.000049
ORF1ab/nsp3543S543StcTtcC13AY.390.000025
ORF1ab/nsp3543S543FtCttTt33AY.4.40.001227
ORF1ab/nsp3543S543delTCT---33AY.4.50.000322
ORF1ab/nsp3543S543PTctCct33AY.420.000121
ORF1ab/nsp3543S543ATctGct33AY.440.000018
ORF1ab/nsp3543S543PTctCct33AY.440.000018
ORF1ab/nsp3543S543PTctCct33AY.750.000168
ORF1ab/nsp3543S543PTctCct33AY.960.006224
ORF1ab/nsp3543S543FtCttTt33B.1.10.000054
ORF1ab/nsp3543S543PTctCct33B.1.1.2070.003546
ORF1ab/nsp3543S543PTctCct33B.1.1.2530.007519
ORF1ab/nsp3543S543TTctAct33B.1.1.70.000003
ORF1ab/nsp3543S543delTCT---33B.1.1770.00004
ORF1ab/nsp3543S543PTctCct33B.1.1770.00004
ORF1ab/nsp3543S543PTctCct33B.1.20.000026
ORF1ab/nsp3543S543FtCttTt33B.1.3110.000824
ORF1ab/nsp3543S543FtCttTt33B.1.360.000438
ORF1ab/nsp3543S543ATctGct33B.1.5260.000071
ORF1ab/nsp3543S543YtCttAt33B.1.617.20.000011
ORF1ab/nsp3543S543ATctGct33B.1.6210.000266
ORF1ab/nsp3543S543PTctCct33C.370.000348
ORF1ab/nsp3543S543del1TCTCT-12All0
ORF1ab/nsp3543S543del1Tct-ct12All0
ORF1ab/nsp3543S543FtCttTt22AY.100.00106
ORF1ab/nsp3543S543PTctCct22AY.1000.000092
ORF1ab/nsp3543S543FtCttTt22AY.1180.000125
ORF1ab/nsp3543S543StcTtcC22AY.230.000139
ORF1ab/nsp3543S543PTctCct22AY.250.000012
ORF1ab/nsp3543S543FtCttTt22AY.330.000134
ORF1ab/nsp3543S543FtCttTt22AY.390.000049
ORF1ab/nsp3543S543PTctCct22AY.390.000049
ORF1ab/nsp3543S543FtCttTt22AY.39.10.000079
ORF1ab/nsp3543S543FtCttTt22AY.410.000588
ORF1ab/nsp3543S543FtCttTt22AY.450.000243
ORF1ab/nsp3543S543FtCttTt22AY.490.00639
ORF1ab/nsp3543S543FtCttTt22AY.7.20.001119
ORF1ab/nsp3543S543PTctCct22AY.98.10.000097
ORF1ab/nsp3543S543ATctGct22B.10.000018
ORF1ab/nsp3543S543YtCttAt22B.10.000018
ORF1ab/nsp3543S543TTctAct22B.10.000018
ORF1ab/nsp3543S543YtCttAt22B.1.10.000036
ORF1ab/nsp3543S543PTctCct22B.1.1.560.035714
ORF1ab/nsp3543S543ATctGct22B.1.1600.000062
ORF1ab/nsp3543S543StcTtcC22B.1.1770.000026
ORF1ab/nsp3543S543YtCttAt22B.1.2340.000264
ORF1ab/nsp3543S543CtCttGt22B.1.3670.001585
ORF1ab/nsp3543S543FtCttTt22B.1.5640.000852
ORF1ab/nsp3543S543ATctGct22B.1.5680.002222
ORF1ab/nsp3543S543StcTtcC22P.10.000032
ORF1ab/nsp3543S543FtCttTt22W.10.017391
ORF1ab/nsp3543S543FtCttTt11A0.000387
ORF1ab/nsp3543S543FtCttTt11A.10.000282
ORF1ab/nsp3543S543StcTtcC11A.20.000662
ORF1ab/nsp3543S543del2tCTt--11All0
ORF1ab/nsp3543S543LTCtCTt11All0
ORF1ab/nsp3543S543DTCtGAt11All0
ORF1ab/nsp3543S543StcTtcC11AY.1000.000046
ORF1ab/nsp3543S543ATctGct11AY.1030.000006
ORF1ab/nsp3543S543delTCT---11AY.1030.000006
ORF1ab/nsp3543S543FtCttTt11AY.1110.000183
ORF1ab/nsp3543S543delTCT---11AY.1110.000183
ORF1ab/nsp3543S543FtCttTt11AY.1170.000085
ORF1ab/nsp3543S543PTctCct11AY.1190.000035
ORF1ab/nsp3543S543del1TCTCT-11AY.1200.000037
ORF1ab/nsp3543S543FtCttTt11AY.1210.000135
ORF1ab/nsp3543S543FtCttTt11AY.130.000161
ORF1ab/nsp3543S543PTctCct11AY.140.000088
ORF1ab/nsp3543S543FtCttTt11AY.16.10.00047
ORF1ab/nsp3543S543FtCttTt11AY.20.000356
ORF1ab/nsp3543S543FtCttTt11AY.200.000039
ORF1ab/nsp3543S543PTctCct11AY.200.000039
ORF1ab/nsp3543S543FtCttTt11AY.230.00007
ORF1ab/nsp3543S543CtCttGt11AY.250.000006
ORF1ab/nsp3543S543ATctGct11AY.250.000006
ORF1ab/nsp3543S543YtCttAt11AY.260.000028
ORF1ab/nsp3543S543StcTtcC11AY.290.000016
ORF1ab/nsp3543S543StcTtcC11AY.30.00001
ORF1ab/nsp3543S543PTctCct11AY.320.000532
ORF1ab/nsp3543S543PTctCct11AY.34.10.00051
ORF1ab/nsp3543S543ATctGct11AY.40.000002
ORF1ab/nsp3543S543StcTtcC11AY.4.20.000022
ORF1ab/nsp3543S543PTctCct11AY.4.2.10.000149
ORF1ab/nsp3543S543PTctCct11AY.4.30.000842
ORF1ab/nsp3543S543FtCttTt11AY.420.00004
ORF1ab/nsp3543S543ATctGct11AY.430.000004
ORF1ab/nsp3543S543PTctCct11AY.430.000004
ORF1ab/nsp3543S543LTCtCTt11AY.440.000006
ORF1ab/nsp3543S543TTctAct11AY.440.000006
ORF1ab/nsp3543S543PTctCct11AY.450.000122
ORF1ab/nsp3543S543ATctGct11AY.470.000031
ORF1ab/nsp3543S543YtCttAt11AY.50.000021
ORF1ab/nsp3543S543StcTtcC11AY.50.000021
ORF1ab/nsp3543S543FtCttTt11AY.580.000907
ORF1ab/nsp3543S543YtCttAt11AY.610.000105
ORF1ab/nsp3543S543FtCttTt11AY.650.000533
ORF1ab/nsp3543S543PTctCct11AY.650.000533
ORF1ab/nsp3543S543FtCttTt11AY.670.000464
ORF1ab/nsp3543S543PTctCct11AY.910.00073
ORF1ab/nsp3543S543FtCttTt11AY.99.20.000092
ORF1ab/nsp3543S543YtCttAt11AY.99.20.000092
ORF1ab/nsp3543S543StcTtcC11B0.000128
ORF1ab/nsp3543S543del1Tct-ct11B.10.000009
ORF1ab/nsp3543S543StcTtcC11B.1.10.000018
ORF1ab/nsp3543S543FtCttTt11B.1.1.2140.000055
ORF1ab/nsp3543S543PTctCct11B.1.1.2360.006897
ORF1ab/nsp3543S543StcTtcC11B.1.1.250.000569
ORF1ab/nsp3543S543PTctCct11B.1.1.2770.000759
ORF1ab/nsp3543S543PTctCct11B.1.1.2910.000742
ORF1ab/nsp3543S543ATctGct11B.1.1.2940.001266
ORF1ab/nsp3543S543StcTtcC11B.1.1.2940.001266
ORF1ab/nsp3543S543PTctCct11B.1.1.3660.015873
ORF1ab/nsp3543S543PTctCct11B.1.1.370.000193
ORF1ab/nsp3543S543FtCttTt11B.1.1.4290.004608
ORF1ab/nsp3543S543StcTtcC11B.1.1.4340.000349
ORF1ab/nsp3543S543PTctCct11B.1.1.4480.002033
ORF1ab/nsp3543S543FtCttTt11B.1.1.500.000679
ORF1ab/nsp3543S543StcTtcC11B.1.1.500.000679
ORF1ab/nsp3543S543YtCttAt11B.1.1.500.000679
ORF1ab/nsp3543S543delTCT---11B.1.1.5190.00004
ORF1ab/nsp3543S543ATctGct11B.1.1.5190.00004
ORF1ab/nsp3543S543StcTtcC11B.1.1.630.000386
ORF1ab/nsp3543S543del2tCTt--11B.1.1.70.000001
ORF1ab/nsp3543S543YtCttAt11B.1.1180.006711
ORF1ab/nsp3543S543FtCttTt11B.1.1260.001276
ORF1ab/nsp3543S543delTCT---11B.1.1600.000031
ORF1ab/nsp3543S543YtCttAt11B.1.1770.000013
ORF1ab/nsp3543S543FtCttTt11B.1.177.210.000076
ORF1ab/nsp3543S543StcTtcC11B.1.177.600.000218
ORF1ab/nsp3543S543FtCttTt11B.1.177.600.000218
ORF1ab/nsp3543S543ATctGct11B.1.20.000009
ORF1ab/nsp3543S543FtCttTt11B.1.214.20.0006
ORF1ab/nsp3543S543ATctGct11B.1.2220.001692
ORF1ab/nsp3543S543PTctCct11B.1.2400.000216
ORF1ab/nsp3543S543StcTtcA11B.1.2580.000067
ORF1ab/nsp3543S543PTctCct11B.1.258.170.000104
ORF1ab/nsp3543S543ATctGct11B.1.2600.003344
ORF1ab/nsp3543S543PTctCct11B.1.2940.032258
ORF1ab/nsp3543S543StcTtcC11B.1.3010.005917
ORF1ab/nsp3543S543StcTtcA11B.1.3320.003497
ORF1ab/nsp3543S543YtCttAt11B.1.3510.00003
ORF1ab/nsp3543S543FtCttTt11B.1.351.20.000303
ORF1ab/nsp3543S543YtCttAt11B.1.351.20.000303
ORF1ab/nsp3543S543FtCttTt11B.1.351.50.0006
ORF1ab/nsp3543S543delTCT---11B.1.360.000146
ORF1ab/nsp3543S543StcTtcC11B.1.360.000146
ORF1ab/nsp3543S543PTctCct11B.1.36.220.001208
ORF1ab/nsp3543S543FtCttTt11B.1.3610.001289
ORF1ab/nsp3543S543FtCttTt11B.1.4090.000781
ORF1ab/nsp3543S543delTCT---11B.1.4150.014286
ORF1ab/nsp3543S543TTctAct11B.1.4290.000024
ORF1ab/nsp3543S543DTCtGAt11B.1.4620.007246
ORF1ab/nsp3543S543FtCttTt11B.1.466.10.007194
ORF1ab/nsp3543S543YtCttAt11B.1.4730.019231
ORF1ab/nsp3543S543FtCttTt11B.1.4740.001901
ORF1ab/nsp3543S543PTctCct11B.1.5030.002488
ORF1ab/nsp3543S543ATctGct11B.1.5250.000113
ORF1ab/nsp3543S543StcTtcC11B.1.5250.000113
ORF1ab/nsp3543S543PTctCct11B.1.5810.009434
ORF1ab/nsp3543S543FtCttTt11B.1.5850.027778
ORF1ab/nsp3543S543PTctCct11B.1.5870.001898
ORF1ab/nsp3543S543StcTtcC11B.1.5950.000261
ORF1ab/nsp3543S543StcTtcA11B.1.5960.000087
ORF1ab/nsp3543S543FtCttTt11B.1.5960.000087
ORF1ab/nsp3543S543FtCttTt11B.1.6090.000479
ORF1ab/nsp3543S543delTCT---11B.1.617.20.000004
ORF1ab/nsp3543S543StcTtcC11B.1.6210.000089
ORF1ab/nsp3543S543PTctCct11B.1.6280.000352
ORF1ab/nsp3543S543PTctCct11B.1.80.001972
ORF1ab/nsp3543S543CtCttGt11B.30.000831
ORF1ab/nsp3543S543FtCttTt11B.400.000364
ORF1ab/nsp3543S543FtCttTt11D.20.000075
ORF1ab/nsp3543S543TTctAct11P.10.000016
ORF1ab/nsp3543S543ATctGct11P.10.000016
ORF1ab/nsp3543S543FtCttTt11P.1.100.000269
ORF1ab/nsp3543S543TTctAct11P.1.140.000048
ORF1ab/nsp3543S543PTctCct11P.1.140.000048