CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 54

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp354A54AA872AsyngcCgcA241712410.5134462879-2881
ORF1ab/nsp354A54AA872AsyngcCgcT241711710.4844852879-2881
ORF1ab/nsp354A54AA872AsyngcCgcG241750.002068682879-2881
ORF1ab/nsp354A54VA872VnonsyngCcgTc110110990.9981832879-2881
ORF1ab/nsp354A54VA872VnonsyngCCgTT110120.001816532879-2881
ORF1ab/nsp354A54TA872TnonsynGccAcc78278212879-2881
ORF1ab/nsp354A54SA872SnonsynGccTcc1041030.9903852879-2881
ORF1ab/nsp354A54SA872SnonsynGcCTcT10410.009615382879-2881
ORF1ab/nsp354A54delA872deldelGCC---333312879-2881
ORF1ab/nsp354A54GA872GnonsyngCcgGc15110.7333332879-2881
ORF1ab/nsp354A54GA872GnonsyngCCgGT1540.2666672879-2881
ORF1ab/nsp354A54DA872DnonsyngCcgAc121212879-2881
ORF1ab/nsp354A54PA872PnonsynGccCcc7712879-2881
ORF1ab/nsp354A54NA872NnonsynGCcAAc5512879-2881
ORF1ab/nsp354A54del1A872del1delGcc-cc430.752879-2881
ORF1ab/nsp354A54CA872CnonsynGCcTGc420.52879-2881
ORF1ab/nsp354A54FA872FnonsynGCCTTT420.52879-2881
ORF1ab/nsp354A54FA872FnonsynGCcTTc420.52879-2881
ORF1ab/nsp354A54CA872CnonsynGCCTGT420.52879-2881
ORF1ab/nsp354A54del1A872del1delgcCgc-410.252879-2881
ORF1ab/nsp354A54RA872RnonsynGCCCGT2212879-2881
ORF1ab/nsp354A54IA872InonsynGCcATc210.52879-2881
ORF1ab/nsp354A54IA872InonsynGCCATA210.52879-2881
ORF1ab/nsp354A54del2A872del2delgCCg--1112879-2881

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp354A54AgcCgcA12412417All0.000237
ORF1ab/nsp354A54AgcCgcT11712417All0.000224
ORF1ab/nsp354A54AgcCgcG52417All0.000001
ORF1ab/nsp354A54VgCcgTc10991101All0.00021
ORF1ab/nsp354A54VgCCgTT21101All0
ORF1ab/nsp354A54AgcCgcA10221022AY.460.10637
ORF1ab/nsp354A54TGccAcc782782All0.00015
ORF1ab/nsp354A54VgCcgTc186186B.1.1.70.000167
ORF1ab/nsp354A54TGccAcc165165B.1.10.002993
ORF1ab/nsp354A54AgcCgcT110151AY.40.000171
ORF1ab/nsp354A54AgcCgcA41151AY.40.000064
ORF1ab/nsp354A54AgcCgcT137150B.1.617.20.000516
ORF1ab/nsp354A54AgcCgcA13150B.1.617.20.000049
ORF1ab/nsp354A54AgcCgcT139147B.1.1.70.000124
ORF1ab/nsp354A54AgcCgcA8147B.1.1.70.000007
ORF1ab/nsp354A54TGccAcc147147N.90.875
ORF1ab/nsp354A54SGccTcc103104All0.00002
ORF1ab/nsp354A54SGcCTcT1104All0
ORF1ab/nsp354A54VgCcgTc101101AY.1030.000627
ORF1ab/nsp354A54VgCcgTc8787AY.230.006068
ORF1ab/nsp354A54VgCcgTc7272B.1.4290.001694
ORF1ab/nsp354A54AgcCgcT3870B.1.1770.0005
ORF1ab/nsp354A54AgcCgcA3270B.1.1770.000421
ORF1ab/nsp354A54VgCcgTc7070B.1.3770.319635
ORF1ab/nsp354A54VgCcgTc6767B.1.5690.971014
ORF1ab/nsp354A54AgcCgcT6565B.1.4590.265306
ORF1ab/nsp354A54AgcCgcT5364B.10.000485
ORF1ab/nsp354A54AgcCgcA1164B.10.000101
ORF1ab/nsp354A54TGccAcc6363B.1.617.20.000237
ORF1ab/nsp354A54AgcCgcT5656B.1.2340.007389
ORF1ab/nsp354A54VgCcgTc5050B.10.000458
ORF1ab/nsp354A54VgCcgTc5050B.1.1.2740.252525
ORF1ab/nsp354A54AgcCgcT4748AY.39.10.001862
ORF1ab/nsp354A54AgcCgcA148AY.39.10.00004
ORF1ab/nsp354A54TGccAcc4848AY.40.000075
ORF1ab/nsp354A54TGccAcc3939AY.1000.001794
ORF1ab/nsp354A54TGccAcc3939B.1.1.70.000035
ORF1ab/nsp354A54VgCcgTc3737AY.40.000058
ORF1ab/nsp354A54SGccTcc3737B.1.1.70.000033
ORF1ab/nsp354A54AgcCgcA3737B.1.177.810.007005
ORF1ab/nsp354A54AgcCgcT3436AY.390.00084
ORF1ab/nsp354A54AgcCgcA236AY.390.000049
ORF1ab/nsp354A54AgcCgcT3435AY.30.000338
ORF1ab/nsp354A54AgcCgcA135AY.30.00001
ORF1ab/nsp354A54delGCC---3333All0.000006
ORF1ab/nsp354A54AgcCgcT2933AY.430.000128
ORF1ab/nsp354A54AgcCgcA433AY.430.000018
ORF1ab/nsp354A54AgcCgcT3233AY.99.20.002949
ORF1ab/nsp354A54AgcCgcA133AY.99.20.000092
ORF1ab/nsp354A54VgCcgTc3232B.1.617.20.00012
ORF1ab/nsp354A54AgcCgcT2831AY.250.000168
ORF1ab/nsp354A54AgcCgcA331AY.250.000018
ORF1ab/nsp354A54VgCcgTc3131AY.430.000137
ORF1ab/nsp354A54TGccAcc2828AY.1030.000174
ORF1ab/nsp354A54AgcCgcT2027B.1.20.000176
ORF1ab/nsp354A54AgcCgcA727B.1.20.000062
ORF1ab/nsp354A54AgcCgcT1724AY.1030.000106
ORF1ab/nsp354A54AgcCgcA724AY.1030.000043
ORF1ab/nsp354A54AgcCgcT2424B.1.177.580.031957
ORF1ab/nsp354A54TGccAcc2323AY.30.000229
ORF1ab/nsp354A54AgcCgcT1921B.1.10.000345
ORF1ab/nsp354A54AgcCgcA221B.1.10.000036
ORF1ab/nsp354A54AgcCgcT1818B.1.1.630.006944
ORF1ab/nsp354A54VgCcgTc1818B.1.20.000158
ORF1ab/nsp354A54TGccAcc1717AY.1200.000632
ORF1ab/nsp354A54VgCcgTc1616AY.1020.000424
ORF1ab/nsp354A54GgCcgGc1115All0.000002
ORF1ab/nsp354A54GgCCgGT415All0.000001
ORF1ab/nsp354A54AgcCgcT1215AY.440.000073
ORF1ab/nsp354A54AgcCgcA315AY.440.000018
ORF1ab/nsp354A54AgcCgcT1515P.10.000236
ORF1ab/nsp354A54VgCcgTc1414AQ.11
ORF1ab/nsp354A54AgcCgcT1414P.20.002613
ORF1ab/nsp354A54VgCcgTc1313P.1.150.00302
ORF1ab/nsp354A54DgCcgAc1212All0.000002
ORF1ab/nsp354A54VgCcgTc1212AY.390.000297
ORF1ab/nsp354A54SGccTcc1212AY.40.000019
ORF1ab/nsp354A54VgCcgTc1212AY.50.000248
ORF1ab/nsp354A54VgCcgTc1212B.1.10.000218
ORF1ab/nsp354A54VgCcgTc1212B.1.1.370.002314
ORF1ab/nsp354A54VgCcgTc1111AY.4.20.000239
ORF1ab/nsp354A54AgcCgcT1111B.1.1.2970.024609
ORF1ab/nsp354A54AgcCgcT1111B.1.6030.117021
ORF1ab/nsp354A54AgcCgcA710AY.1190.000247
ORF1ab/nsp354A54AgcCgcT310AY.1190.000106
ORF1ab/nsp354A54VgCcgTc1010AY.120.003161
ORF1ab/nsp354A54TGccAcc1010AY.250.00006
ORF1ab/nsp354A54AgcCgcT1010AY.4.20.000217
ORF1ab/nsp354A54TGccAcc1010B.10.000092
ORF1ab/nsp354A54AgcCgcT1010B.1.6370.000731
ORF1ab/nsp354A54SGccTcc1010B.230.02924
ORF1ab/nsp354A54AgcCgcA89A.2.50.003992
ORF1ab/nsp354A54AgcCgcT19A.2.50.000499
ORF1ab/nsp354A54AgcCgcT89AY.260.000226
ORF1ab/nsp354A54AgcCgcA19AY.260.000028
ORF1ab/nsp354A54AgcCgcT78AY.200.000272
ORF1ab/nsp354A54AgcCgcA18AY.200.000039
ORF1ab/nsp354A54VgCcgTc88AY.440.000049
ORF1ab/nsp354A54AgcCgcA58AY.50.000103
ORF1ab/nsp354A54AgcCgcT38AY.50.000062
ORF1ab/nsp354A54TGccAcc88AY.720.010884
ORF1ab/nsp354A54VgCcgTc88AY.98.10.000387
ORF1ab/nsp354A54AgcCgcT88B.1.1.390.004077
ORF1ab/nsp354A54AgcCgcT58B.1.1.5190.000199
ORF1ab/nsp354A54AgcCgcA38B.1.1.5190.000119
ORF1ab/nsp354A54SGccTcc88B.1.20.00007
ORF1ab/nsp354A54AgcCgcT78B.1.36.290.003621
ORF1ab/nsp354A54AgcCgcA18B.1.36.290.000517
ORF1ab/nsp354A54TGccAcc88P.10.000126
ORF1ab/nsp354A54PGccCcc77All0.000001
ORF1ab/nsp354A54VgCcgTc77AY.470.000218
ORF1ab/nsp354A54VgCcgTc77AY.9.10.000586
ORF1ab/nsp354A54TGccAcc77B.1.1.330.002946
ORF1ab/nsp354A54VgCcgTc77B.1.1.4340.00244
ORF1ab/nsp354A54VgCcgTc77B.1.1770.000092
ORF1ab/nsp354A54TGccAcc77B.1.258.140.006863
ORF1ab/nsp354A54VgCcgTc77B.1.5960.00061
ORF1ab/nsp354A54TGccAcc77B.1.6190.006098
ORF1ab/nsp354A54VgCcgTc77P.10.00011
ORF1ab/nsp354A54GgCCgGT460.222222
ORF1ab/nsp354A54GgCcgGc260.111111
ORF1ab/nsp354A54delGCC---66B.10.000055
ORF1ab/nsp354A54TGccAcc66B.1.1.2840.000644
ORF1ab/nsp354A54TGccAcc66B.1.1.3930.666667
ORF1ab/nsp354A54AgcCgcT66B.1.1600.000187
ORF1ab/nsp354A54AgcCgcT66B.1.2580.000399
ORF1ab/nsp354A54NGCcAAc55All0.000001
ORF1ab/nsp354A54AgcCgcT55AY.1020.000133
ORF1ab/nsp354A54AgcCgcT35AY.1200.000112
ORF1ab/nsp354A54AgcCgcA25AY.1200.000074
ORF1ab/nsp354A54AgcCgcT55AY.230.000349
ORF1ab/nsp354A54TGccAcc55AY.430.000022
ORF1ab/nsp354A54SGccTcc55AY.99.20.000461
ORF1ab/nsp354A54TGccAcc55B.1.2210.000355
ORF1ab/nsp354A54AgcCgcT55B.1.3510.000149
ORF1ab/nsp354A54TGccAcc55B.1.3660.02439
ORF1ab/nsp354A54VgCcgTc55B.1.4220.004062
ORF1ab/nsp354A54VgCCgTT240.111111
ORF1ab/nsp354A54FGCcTTc240.111111
ORF1ab/nsp354A54VgCcgTc240.111111
ORF1ab/nsp354A54FGCCTTT240.111111
ORF1ab/nsp354A54CGCcTGc240.111111
ORF1ab/nsp354A54CGCCTGT240.111111
ORF1ab/nsp354A54del1Gcc-cc34All0.000001
ORF1ab/nsp354A54FGCCTTT24All0
ORF1ab/nsp354A54FGCcTTc24All0
ORF1ab/nsp354A54CGCCTGT24All0
ORF1ab/nsp354A54CGCcTGc24All0
ORF1ab/nsp354A54del1gcCgc-14All0
ORF1ab/nsp354A54TGccAcc44AY.1180.000251
ORF1ab/nsp354A54AgcCgcT44AY.1180.000251
ORF1ab/nsp354A54TGccAcc44AY.1190.000141
ORF1ab/nsp354A54AgcCgcT44AY.140.000352
ORF1ab/nsp354A54VgCcgTc44AY.250.000024
ORF1ab/nsp354A54TGccAcc44AY.260.000113
ORF1ab/nsp354A54AgcCgcT44AY.270.000259
ORF1ab/nsp354A54VgCcgTc44AY.30.00004
ORF1ab/nsp354A54SGccTcc44AY.390.000099
ORF1ab/nsp354A54AgcCgcT44AY.60.000165
ORF1ab/nsp354A54TGccAcc44AY.670.001857
ORF1ab/nsp354A54AgcCgcT44AY.710.0019
ORF1ab/nsp354A54TGccAcc44AY.750.000224
ORF1ab/nsp354A54VgCcgTc44B.1.1.5190.000159
ORF1ab/nsp354A54delGCC---44B.1.1.70.000004
ORF1ab/nsp354A54AgcCgcT44B.1.214.20.002398
ORF1ab/nsp354A54VgCcgTc44B.1.2340.000528
ORF1ab/nsp354A54TGccAcc44B.1.258.170.000416
ORF1ab/nsp354A54AgcCgcT34B.1.4290.000071
ORF1ab/nsp354A54AgcCgcA14B.1.4290.000024
ORF1ab/nsp354A54AgcCgcT44P.1.140.000191
ORF1ab/nsp354A54VgCcgTc33A.2.5.20.004717
ORF1ab/nsp354A54TGccAcc33AY.1020.00008
ORF1ab/nsp354A54SGccTcc33AY.1020.00008
ORF1ab/nsp354A54SGccTcc33AY.1030.000019
ORF1ab/nsp354A54AgcCgcT33AY.130.000483
ORF1ab/nsp354A54TGccAcc33AY.390.000074
ORF1ab/nsp354A54AgcCgcT33AY.4.50.000322
ORF1ab/nsp354A54AgcCgcT33AY.420.000121
ORF1ab/nsp354A54GgCcgGc33AY.430.000013
ORF1ab/nsp354A54TGccAcc33AY.440.000018
ORF1ab/nsp354A54SGccTcc33AY.450.000365
ORF1ab/nsp354A54TGccAcc33AY.470.000093
ORF1ab/nsp354A54AgcCgcT33AY.650.001599
ORF1ab/nsp354A54TGccAcc33AY.70.000588
ORF1ab/nsp354A54VgCcgTc33AY.750.000168
ORF1ab/nsp354A54VgCcgTc33AY.920.000862
ORF1ab/nsp354A54DgCcgAc33B.10.000027
ORF1ab/nsp354A54TGccAcc33B.1.1.3060.001315
ORF1ab/nsp354A54delGCC---33B.1.1.330.001263
ORF1ab/nsp354A54TGccAcc33B.1.1.3680.009259
ORF1ab/nsp354A54TGccAcc33B.1.1.5190.000119
ORF1ab/nsp354A54TGccAcc33B.1.1110.003525
ORF1ab/nsp354A54TGccAcc33B.1.177.100.002634
ORF1ab/nsp354A54TGccAcc33B.1.20.000026
ORF1ab/nsp354A54VgCcgTc33B.1.2430.000209
ORF1ab/nsp354A54VgCcgTc33B.1.2580.0002
ORF1ab/nsp354A54AgcCgcA33B.1.36.360.001806
ORF1ab/nsp354A54VgCcgTc33B.1.4590.012245
ORF1ab/nsp354A54VgCcgTc33B.1.5090.002597
ORF1ab/nsp354A54VgCcgTc33B.1.6390.065217
ORF1ab/nsp354A54AgcCgcA23B.400.000729
ORF1ab/nsp354A54AgcCgcT13B.400.000364
ORF1ab/nsp354A54AgcCgcG33C.1.20.012766
ORF1ab/nsp354A54AgcCgcT33C.160.003181
ORF1ab/nsp354A54TGccAcc33Q.10.000379
ORF1ab/nsp354A54RGCCCGT220.111111
ORF1ab/nsp354A54delGCC---220.111111
ORF1ab/nsp354A54TGccAcc22A0.000774
ORF1ab/nsp354A54AgcCgcT22A0.000774
ORF1ab/nsp354A54RGCCCGT22All0
ORF1ab/nsp354A54IGCcATc12All0
ORF1ab/nsp354A54IGCCATA12All0
ORF1ab/nsp354A54VgCcgTc22AY.1000.000092
ORF1ab/nsp354A54AgcCgcT12AY.1050.000643
ORF1ab/nsp354A54AgcCgcA12AY.1050.000643
ORF1ab/nsp354A54TGccAcc22AY.1130.000285
ORF1ab/nsp354A54VgCcgTc22AY.1160.000574
ORF1ab/nsp354A54AgcCgcA22AY.1170.000169
ORF1ab/nsp354A54VgCcgTc22AY.1180.000125
ORF1ab/nsp354A54VgCcgTc22AY.1190.000071
ORF1ab/nsp354A54VgCcgTc22AY.200.000078
ORF1ab/nsp354A54TGccAcc22AY.230.000139
ORF1ab/nsp354A54TGccAcc22AY.3.10.000171
ORF1ab/nsp354A54VgCcgTc22AY.330.000134
ORF1ab/nsp354A54AgcCgcT22AY.340.000194
ORF1ab/nsp354A54VgCcgTc22AY.39.10.000079
ORF1ab/nsp354A54TGccAcc22AY.4.20.000043
ORF1ab/nsp354A54SGccTcc22AY.430.000009
ORF1ab/nsp354A54AgcCgcT22AY.450.000243
ORF1ab/nsp354A54VgCcgTc22AY.46.40.000329
ORF1ab/nsp354A54AgcCgcA12AY.46.60.000072
ORF1ab/nsp354A54AgcCgcT12AY.46.60.000072
ORF1ab/nsp354A54AgcCgcT22AY.470.000062
ORF1ab/nsp354A54AgcCgcT22AY.5.30.000675
ORF1ab/nsp354A54AgcCgcA22AY.590.001059
ORF1ab/nsp354A54VgCcgTc22AY.9.20.000073
ORF1ab/nsp354A54VgCcgTc22B0.000256
ORF1ab/nsp354A54TGccAcc22B.1.1.1450.074074
ORF1ab/nsp354A54AgcCgcT22B.1.1.1920.004619
ORF1ab/nsp354A54TGccAcc22B.1.1.2140.000111
ORF1ab/nsp354A54VgCcgTc22B.1.1.2140.000111
ORF1ab/nsp354A54AgcCgcT22B.1.1.2220.000408
ORF1ab/nsp354A54TGccAcc22B.1.1.2220.000408
ORF1ab/nsp354A54TGccAcc22B.1.1.280.000622
ORF1ab/nsp354A54delGCC---22B.1.1.3480.001592
ORF1ab/nsp354A54AgcCgcA12B.1.1.4090.002833
ORF1ab/nsp354A54AgcCgcT12B.1.1.4090.002833
ORF1ab/nsp354A54VgCcgTc22B.1.1.630.000772
ORF1ab/nsp354A54VgCcgTc22B.1.1600.000062
ORF1ab/nsp354A54TGccAcc22B.1.177.120.000303
ORF1ab/nsp354A54TGccAcc22B.1.177.810.000379
ORF1ab/nsp354A54DgCcgAc22B.1.20.000018
ORF1ab/nsp354A54del1Gcc-cc22B.1.20.000018
ORF1ab/nsp354A54VgCcgTc22B.1.214.20.001199
ORF1ab/nsp354A54TGccAcc22B.1.2240.05
ORF1ab/nsp354A54VgCcgTc22B.1.2370.00995
ORF1ab/nsp354A54VgCcgTc22B.1.36.180.00084
ORF1ab/nsp354A54AgcCgcT22B.1.3970.009709
ORF1ab/nsp354A54delGCC---22B.1.4240.016129
ORF1ab/nsp354A54delGCC---22B.1.4290.000047
ORF1ab/nsp354A54TGccAcc22B.1.4290.000047
ORF1ab/nsp354A54TGccAcc22B.1.5260.000047
ORF1ab/nsp354A54AgcCgcT22B.1.5760.001813
ORF1ab/nsp354A54AgcCgcT22B.1.5960.000174
ORF1ab/nsp354A54SGccTcc22B.1.617.20.000008
ORF1ab/nsp354A54AgcCgcT22B.40.004415
ORF1ab/nsp354A54SGcCTcT12B.400.000364
ORF1ab/nsp354A54SGccTcc12B.400.000364
ORF1ab/nsp354A54TGccAcc22N.60.014184
ORF1ab/nsp354A54delGCC---22N.60.014184
ORF1ab/nsp354A54delGCC---22P.10.000032
ORF1ab/nsp354A54TGccAcc22P.1.140.000096
ORF1ab/nsp354A54DgCcgAc11A0.000387
ORF1ab/nsp354A54NGCcAAc11A0.000387
ORF1ab/nsp354A54PGccCcc11A.2.40.003367
ORF1ab/nsp354A54SGccTcc11A.2.50.000499
ORF1ab/nsp354A54AgcCgcT11AD.20.000219
ORF1ab/nsp354A54del2gCCg--11All0
ORF1ab/nsp354A54SGccTcc11AY.1000.000046
ORF1ab/nsp354A54AgcCgcT11AY.1000.000046
ORF1ab/nsp354A54GgCcgGc11AY.1020.000027
ORF1ab/nsp354A54IGCcATc11AY.1030.000006
ORF1ab/nsp354A54AgcCgcT11AY.1140.000231
ORF1ab/nsp354A54VgCcgTc11AY.1170.000085
ORF1ab/nsp354A54AgcCgcA11AY.120.000316
ORF1ab/nsp354A54VgCcgTc11AY.1200.000037
ORF1ab/nsp354A54TGccAcc11AY.120.20.001285
ORF1ab/nsp354A54VgCcgTc11AY.120.2.10.000498
ORF1ab/nsp354A54VgCcgTc11AY.1210.000135
ORF1ab/nsp354A54SGccTcc11AY.1210.000135
ORF1ab/nsp354A54VgCcgTc11AY.160.00038
ORF1ab/nsp354A54AgcCgcT11AY.16.10.00047
ORF1ab/nsp354A54VgCcgTc11AY.190.00114
ORF1ab/nsp354A54TGccAcc11AY.200.000039
ORF1ab/nsp354A54VgCcgTc11AY.240.000431
ORF1ab/nsp354A54SGccTcc11AY.250.000006
ORF1ab/nsp354A54AgcCgcT11AY.290.000016
ORF1ab/nsp354A54TGccAcc11AY.290.000016
ORF1ab/nsp354A54delGCC---11AY.30.00001
ORF1ab/nsp354A54AgcCgcA11AY.300.000396
ORF1ab/nsp354A54AgcCgcT11AY.34.10.00051
ORF1ab/nsp354A54VgCcgTc11AY.360.000148
ORF1ab/nsp354A54GgCcgGc11AY.390.000025
ORF1ab/nsp354A54PGccCcc11AY.40.000002
ORF1ab/nsp354A54VgCcgTc11AY.4.2.10.000149
ORF1ab/nsp354A54VgCcgTc11AY.4.40.000409
ORF1ab/nsp354A54TGccAcc11AY.450.000122
ORF1ab/nsp354A54AgcCgcT11AY.46.20.000635
ORF1ab/nsp354A54TGccAcc11AY.520.000814
ORF1ab/nsp354A54VgCcgTc11AY.530.000288
ORF1ab/nsp354A54TGccAcc11AY.530.000288
ORF1ab/nsp354A54TGccAcc11AY.550.000917
ORF1ab/nsp354A54AgcCgcT11AY.610.000105
ORF1ab/nsp354A54AgcCgcT11AY.640.000595
ORF1ab/nsp354A54TGccAcc11AY.650.000533
ORF1ab/nsp354A54VgCcgTc11AY.650.000533
ORF1ab/nsp354A54AgcCgcT11AY.70.000196
ORF1ab/nsp354A54TGccAcc11AY.7.10.000113
ORF1ab/nsp354A54AgcCgcT11AY.750.000056
ORF1ab/nsp354A54TGccAcc11AY.75.10.00018
ORF1ab/nsp354A54VgCcgTc11AY.840.000437
ORF1ab/nsp354A54DgCcgAc11AY.840.000437
ORF1ab/nsp354A54AgcCgcT11AY.880.000884
ORF1ab/nsp354A54VgCcgTc11AY.90.000068
ORF1ab/nsp354A54delGCC---11AY.9.20.000037
ORF1ab/nsp354A54TGccAcc11AY.9.20.000037
ORF1ab/nsp354A54AgcCgcT11AY.9.20.000037
ORF1ab/nsp354A54TGccAcc11AY.910.00073
ORF1ab/nsp354A54AgcCgcT11AY.930.000273
ORF1ab/nsp354A54PGccCcc11AY.980.000079
ORF1ab/nsp354A54TGccAcc11AY.980.000079
ORF1ab/nsp354A54AgcCgcT11AY.980.000079
ORF1ab/nsp354A54AgcCgcT11AY.98.10.000048
ORF1ab/nsp354A54VgCcgTc11AY.99.20.000092
ORF1ab/nsp354A54AgcCgcG11B0.000128
ORF1ab/nsp354A54DgCcgAc11B0.000128
ORF1ab/nsp354A54SGccTcc11B0.000128
ORF1ab/nsp354A54PGccCcc11B.10.000009
ORF1ab/nsp354A54GgCcgGc11B.10.000009
ORF1ab/nsp354A54PGccCcc11B.1.10.000018
ORF1ab/nsp354A54delGCC---11B.1.10.000018
ORF1ab/nsp354A54TGccAcc11B.1.1.10.000327
ORF1ab/nsp354A54TGccAcc11B.1.1.1210.002427
ORF1ab/nsp354A54AgcCgcT11B.1.1.1410.002012
ORF1ab/nsp354A54VgCcgTc11B.1.1.1760.000439
ORF1ab/nsp354A54AgcCgcT11B.1.1.1760.000439
ORF1ab/nsp354A54SGccTcc11B.1.1.1810.004545
ORF1ab/nsp354A54VgCcgTc11B.1.1.1870.00885
ORF1ab/nsp354A54AgcCgcT11B.1.1.1870.00885
ORF1ab/nsp354A54VgCcgTc11B.1.1.2220.000204
ORF1ab/nsp354A54VgCcgTc11B.1.1.250.000569
ORF1ab/nsp354A54VgCcgTc11B.1.1.2770.000759
ORF1ab/nsp354A54AgcCgcT11B.1.1.280.000311
ORF1ab/nsp354A54AgcCgcT11B.1.1.30.008696
ORF1ab/nsp354A54DgCcgAc11B.1.1.3070.002532
ORF1ab/nsp354A54AgcCgcT11B.1.1.3110.000358
ORF1ab/nsp354A54AgcCgcT11B.1.1.3160.000925
ORF1ab/nsp354A54AgcCgcT11B.1.1.3170.000412
ORF1ab/nsp354A54TGccAcc11B.1.1.3260.001761
ORF1ab/nsp354A54AgcCgcT11B.1.1.3260.001761
ORF1ab/nsp354A54AgcCgcA11B.1.1.330.000421
ORF1ab/nsp354A54TGccAcc11B.1.1.3440.010753
ORF1ab/nsp354A54SGccTcc11B.1.1.3480.000796
ORF1ab/nsp354A54AgcCgcT11B.1.1.3740.002375
ORF1ab/nsp354A54del1Gcc-cc11B.1.1.3780.007299
ORF1ab/nsp354A54VgCcgTc11B.1.1.3880.045455
ORF1ab/nsp354A54SGccTcc11B.1.1.4060.006494
ORF1ab/nsp354A54delGCC---11B.1.1.4160.000905
ORF1ab/nsp354A54TGccAcc11B.1.1.4370.010417
ORF1ab/nsp354A54AgcCgcT11B.1.1.4860.001577
ORF1ab/nsp354A54VgCcgTc11B.1.1.5170.006803
ORF1ab/nsp354A54GgCcgGc11B.1.1.5260.003546
ORF1ab/nsp354A54VgCcgTc11B.1.1.5260.003546
ORF1ab/nsp354A54SGccTcc11B.1.1.630.000386
ORF1ab/nsp354A54del2gCCg--11B.1.1.70.000001
ORF1ab/nsp354A54NGCcAAc11B.1.1.70.000001
ORF1ab/nsp354A54IGCCATA11B.1.1.70.000001
ORF1ab/nsp354A54PGccCcc11B.1.1.70.000001
ORF1ab/nsp354A54TGccAcc11B.1.1.830.00271
ORF1ab/nsp354A54AgcCgcT11B.1.1390.000733
ORF1ab/nsp354A54PGccCcc11B.1.1600.000031
ORF1ab/nsp354A54GgCcgGc11B.1.1770.000013
ORF1ab/nsp354A54DgCcgAc11B.1.1770.000013
ORF1ab/nsp354A54TGccAcc11B.1.1770.000013
ORF1ab/nsp354A54SGccTcc11B.1.1770.000013
ORF1ab/nsp354A54VgCcgTc11B.1.177.180.00116
ORF1ab/nsp354A54VgCcgTc11B.1.177.40.000211
ORF1ab/nsp354A54delGCC---11B.1.177.510.004566
ORF1ab/nsp354A54VgCcgTc11B.1.177.70.000165
ORF1ab/nsp354A54AgcCgcT11B.1.177.860.000183
ORF1ab/nsp354A54AgcCgcT11B.1.2140.003663
ORF1ab/nsp354A54VgCcgTc11B.1.2210.000071
ORF1ab/nsp354A54TGccAcc11B.1.2340.000132
ORF1ab/nsp354A54AgcCgcT11B.1.2400.000216
ORF1ab/nsp354A54SGccTcc11B.1.2430.00007
ORF1ab/nsp354A54TGccAcc11B.1.2430.00007
ORF1ab/nsp354A54VgCcgTc11B.1.258.210.007752
ORF1ab/nsp354A54TGccAcc11B.1.2650.001271
ORF1ab/nsp354A54AgcCgcT11B.1.2980.002114
ORF1ab/nsp354A54VgCcgTc11B.1.30.002618
ORF1ab/nsp354A54VgCcgTc11B.1.3110.000275
ORF1ab/nsp354A54AgcCgcT11B.1.3110.000275
ORF1ab/nsp354A54VgCcgTc11B.1.3290.000608
ORF1ab/nsp354A54VgCcgTc11B.1.3320.003497
ORF1ab/nsp354A54TGccAcc11B.1.3440.008197
ORF1ab/nsp354A54VgCcgTc11B.1.3510.00003
ORF1ab/nsp354A54TGccAcc11B.1.351.50.0006
ORF1ab/nsp354A54AgcCgcT11B.1.351.50.0006
ORF1ab/nsp354A54TGccAcc11B.1.3560.001727
ORF1ab/nsp354A54AgcCgcA11B.1.36.100.004785
ORF1ab/nsp354A54VgCcgTc11B.1.3660.004878
ORF1ab/nsp354A54NGCcAAc11B.1.3750.00082
ORF1ab/nsp354A54VgCcgTc11B.1.3960.000706
ORF1ab/nsp354A54TGccAcc11B.1.4090.000781
ORF1ab/nsp354A54AgcCgcT11B.1.4160.001269
ORF1ab/nsp354A54DgCcgAc11B.1.4160.001269
ORF1ab/nsp354A54AgcCgcT11B.1.4270.00005
ORF1ab/nsp354A54AgcCgcT11B.1.438.10.000107
ORF1ab/nsp354A54VgCcgTc11B.1.4410.009615
ORF1ab/nsp354A54VgCcgTc11B.1.4520.013699
ORF1ab/nsp354A54NGCcAAc11B.1.466.20.000391
ORF1ab/nsp354A54AgcCgcT11B.1.4700.001404
ORF1ab/nsp354A54TGccAcc11B.1.4800.002488
ORF1ab/nsp354A54AgcCgcT11B.1.5240.001406
ORF1ab/nsp354A54TGccAcc11B.1.5240.001406
ORF1ab/nsp354A54NGCcAAc11B.1.5260.000024
ORF1ab/nsp354A54DgCcgAc11B.1.5260.000024
ORF1ab/nsp354A54AgcCgcT11B.1.5330.009615
ORF1ab/nsp354A54VgCcgTc11B.1.5510.00129
ORF1ab/nsp354A54SGccTcc11B.1.5600.00463
ORF1ab/nsp354A54VgCcgTc11B.1.5610.000397
ORF1ab/nsp354A54SGccTcc11B.1.5610.000397
ORF1ab/nsp354A54delGCC---11B.1.5610.000397
ORF1ab/nsp354A54TGccAcc11B.1.5940.03125
ORF1ab/nsp354A54AgcCgcA11B.1.6090.000479
ORF1ab/nsp354A54TGccAcc11B.1.617.10.000129
ORF1ab/nsp354A54del1gcCgc-11B.1.617.20.000004
ORF1ab/nsp354A54VgCcgTc11B.1.619.10.000641
ORF1ab/nsp354A54TGccAcc11B.1.6210.000089
ORF1ab/nsp354A54VgCcgTc11B.1.6210.000089
ORF1ab/nsp354A54AgcCgcG11B.1.6230.000536
ORF1ab/nsp354A54VgCcgTc11B.1.6230.000536
ORF1ab/nsp354A54AgcCgcT11B.1.6280.000352
ORF1ab/nsp354A54AgcCgcT11B.1.6340.003425
ORF1ab/nsp354A54TGccAcc11B.1.700.02439
ORF1ab/nsp354A54VgCcgTc11B.1.840.020833
ORF1ab/nsp354A54delGCC---11B.570.015152
ORF1ab/nsp354A54VgCcgTc11B.60.00091
ORF1ab/nsp354A54VgCcgTc11B.6.10.026316
ORF1ab/nsp354A54TGccAcc11C.160.00106
ORF1ab/nsp354A54delGCC---11C.170.055556
ORF1ab/nsp354A54AgcCgcT11C.360.000911
ORF1ab/nsp354A54AgcCgcT11C.370.000116
ORF1ab/nsp354A54VgCcgTc11D.50.004975
ORF1ab/nsp354A54TGccAcc11N.10.016949
ORF1ab/nsp354A54GgCcgGc11P.10.000016
ORF1ab/nsp354A54TGccAcc11P.1.120.000484
ORF1ab/nsp354A54VgCcgTc11P.1.120.000484
ORF1ab/nsp354A54VgCcgTc11P.20.000187
ORF1ab/nsp354A54VgCcgTc11R.10.00009
ORF1ab/nsp354A54TGccAcc11Y.10.012821