CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 539 | P539P | P1357P | syn | ccA | ccG | 2438 | 1757 | 0.720673 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539P | P1357P | syn | ccA | ccT | 2438 | 669 | 0.274405 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539P | P1357P | syn | ccA | ccC | 2438 | 12 | 0.00492207 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539S | P1357S | nonsyn | Cca | Tca | 336 | 336 | 1 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539L | P1357L | nonsyn | cCa | cTa | 67 | 66 | 0.985075 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539L | P1357L | nonsyn | cCA | cTT | 67 | 1 | 0.0149254 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539del | P1357del | del | CCA | --- | 36 | 36 | 1 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539Q | P1357Q | nonsyn | cCa | cAa | 16 | 16 | 1 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539T | P1357T | nonsyn | CcA | AcG | 10 | 7 | 0.7 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539T | P1357T | nonsyn | Cca | Aca | 10 | 3 | 0.3 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539R | P1357R | nonsyn | cCa | cGa | 2 | 2 | 1 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539A | P1357A | nonsyn | Cca | Gca | 2 | 2 | 1 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539del2 | P1357del2 | del | CCa | --a | 1 | 1 | 1 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539del1 | P1357del1 | del | CCa | -Ta | 1 | 1 | 1 | 4334-4336 |
ORF1ab/nsp3 | 539 | P539E | P1357E | nonsyn | CCa | GAa | 1 | 1 | 1 | 4334-4336 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1757 | 2438 | All | 0.000336 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 669 | 2438 | All | 0.000128 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccC | 12 | 2438 | All | 0.000002 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1339 | 1339 | B.1.128 | 0.850699 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 336 | 336 | All | 0.000064 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 281 | 291 | B.1.2 | 0.002474 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 10 | 291 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 93 | 147 | B.1.1.7 | 0.000083 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 53 | 147 | B.1.1.7 | 0.000047 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccC | 1 | 147 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 129 | 129 | B.1.1.7 | 0.000115 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 114 | 119 | B.1.177 | 0.001501 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 5 | 119 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 96 | 96 | AY.42 | 0.003862 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 82 | 82 | AY.73 | 0.054558 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 66 | 67 | All | 0.000013 |
ORF1ab/nsp3 | 539 | P539L | cCA | cTT | 1 | 67 | All | 0 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 52 | 52 | B.1.617.2 | 0.000196 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 49 | 49 | AY.23 | 0.003418 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 34 | 46 | B.1.617.2 | 0.000128 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 12 | 46 | B.1.617.2 | 0.000045 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 36 | 36 | All | 0.000007 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 27 | 34 | AY.4 | 0.000042 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 5 | 34 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccC | 2 | 34 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 28 | 33 | B.1.526 | 0.000658 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 5 | 33 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 31 | 31 | AY.4 | 0.000048 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 13 | 23 | B.1 | 0.000119 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 7 | 23 | B.1 | 0.000064 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccC | 3 | 23 | B.1 | 0.000027 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 539 | P539Q | cCa | cAa | 16 | 16 | All | 0.000003 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 13 | 15 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 2 | 15 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 11 | 13 | AY.103 | 0.000068 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 2 | 13 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 11 | 11 | B.1.177.9 | 0.014647 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 11 | 11 | R.1 | 0.00099 |
ORF1ab/nsp3 | 539 | P539T | CcA | AcG | 7 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 539 | P539T | Cca | Aca | 3 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 8 | 8 | AY.3.1 | 0.000682 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 539 | P539Q | cCa | cAa | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 7 | 7 | B.1.177.12 | 0.001062 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 5 | 7 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 2 | 7 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 539 | P539T | CcA | AcG | 5 | 6 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 539 | P539T | Cca | Aca | 1 | 6 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 3 | 5 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 2 | 5 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 3 | 5 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 5 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccC | 1 | 5 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 4 | 4 | AY.109 | 0.002959 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 3 | 4 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 4 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccC | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 539 | P539Q | cCa | cAa | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 2 | 3 | P.1 | 0.000032 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp3 | 539 | P539R | cCa | cGa | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 539 | P539A | Cca | Gca | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 2 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccC | 1 | 2 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 2 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 2 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 2 | 2 | B.1.1.305 | 0.007722 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 2 | 2 | B.1.240.1 | 0.05 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 539 | P539T | CcA | AcG | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 539 | P539Q | cCa | cAa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccC | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 539 | P539Q | cCa | cAa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 539 | P539del1 | CCa | -Ta | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 539 | P539E | CCa | GAa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 539 | P539del2 | CCa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 539 | P539R | cCa | cGa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 539 | P539A | Cca | Gca | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 539 | P539A | Cca | Gca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 539 | P539R | cCa | cGa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 539 | P539T | Cca | Aca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 539 | P539E | CCa | GAa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 539 | P539L | cCA | cTT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 539 | P539del2 | CCa | --a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 539 | P539T | Cca | Aca | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 539 | P539Q | cCa | cAa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 539 | P539del1 | CCa | -Ta | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 539 | P539Q | cCa | cAa | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 539 | P539Q | cCa | cAa | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 539 | P539L | cCa | cTa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 539 | P539S | Cca | Tca | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 539 | P539P | ccA | ccT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 539 | P539del | CCA | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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