CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 539

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3539P539PP1357PsynccAccG243817570.7206734334-4336
ORF1ab/nsp3539P539PP1357PsynccAccT24386690.2744054334-4336
ORF1ab/nsp3539P539PP1357PsynccAccC2438120.004922074334-4336
ORF1ab/nsp3539P539SP1357SnonsynCcaTca33633614334-4336
ORF1ab/nsp3539P539LP1357LnonsyncCacTa67660.9850754334-4336
ORF1ab/nsp3539P539LP1357LnonsyncCAcTT6710.01492544334-4336
ORF1ab/nsp3539P539delP1357deldelCCA---363614334-4336
ORF1ab/nsp3539P539QP1357QnonsyncCacAa161614334-4336
ORF1ab/nsp3539P539TP1357TnonsynCcAAcG1070.74334-4336
ORF1ab/nsp3539P539TP1357TnonsynCcaAca1030.34334-4336
ORF1ab/nsp3539P539RP1357RnonsyncCacGa2214334-4336
ORF1ab/nsp3539P539AP1357AnonsynCcaGca2214334-4336
ORF1ab/nsp3539P539del2P1357del2delCCa--a1114334-4336
ORF1ab/nsp3539P539del1P1357del1delCCa-Ta1114334-4336
ORF1ab/nsp3539P539EP1357EnonsynCCaGAa1114334-4336

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3539P539PccAccG17572438All0.000336
ORF1ab/nsp3539P539PccAccT6692438All0.000128
ORF1ab/nsp3539P539PccAccC122438All0.000002
ORF1ab/nsp3539P539PccAccG13391339B.1.1280.850699
ORF1ab/nsp3539P539SCcaTca336336All0.000064
ORF1ab/nsp3539P539PccAccT281291B.1.20.002474
ORF1ab/nsp3539P539PccAccG10291B.1.20.000088
ORF1ab/nsp3539P539PccAccT93147B.1.1.70.000083
ORF1ab/nsp3539P539PccAccG53147B.1.1.70.000047
ORF1ab/nsp3539P539PccAccC1147B.1.1.70.000001
ORF1ab/nsp3539P539SCcaTca129129B.1.1.70.000115
ORF1ab/nsp3539P539PccAccT114119B.1.1770.001501
ORF1ab/nsp3539P539PccAccG5119B.1.1770.000066
ORF1ab/nsp3539P539PccAccG9696AY.420.003862
ORF1ab/nsp3539P539PccAccT8282AY.730.054558
ORF1ab/nsp3539P539LcCacTa6667All0.000013
ORF1ab/nsp3539P539LcCAcTT167All0
ORF1ab/nsp3539P539SCcaTca5252B.1.617.20.000196
ORF1ab/nsp3539P539PccAccG4949AY.230.003418
ORF1ab/nsp3539P539PccAccG3446B.1.617.20.000128
ORF1ab/nsp3539P539PccAccT1246B.1.617.20.000045
ORF1ab/nsp3539P539delCCA---3636All0.000007
ORF1ab/nsp3539P539PccAccG2734AY.40.000042
ORF1ab/nsp3539P539PccAccT534AY.40.000008
ORF1ab/nsp3539P539PccAccC234AY.40.000003
ORF1ab/nsp3539P539PccAccG2833B.1.5260.000658
ORF1ab/nsp3539P539PccAccT533B.1.5260.000118
ORF1ab/nsp3539P539SCcaTca3131AY.40.000048
ORF1ab/nsp3539P539PccAccT1323B.10.000119
ORF1ab/nsp3539P539PccAccG723B.10.000064
ORF1ab/nsp3539P539PccAccC323B.10.000027
ORF1ab/nsp3539P539LcCacTa1717B.1.1.70.000015
ORF1ab/nsp3539P539QcCacAa1616All0.000003
ORF1ab/nsp3539P539delCCA---1616B.1.1.70.000014
ORF1ab/nsp3539P539PccAccG1315AY.430.000058
ORF1ab/nsp3539P539PccAccT215AY.430.000009
ORF1ab/nsp3539P539SCcaTca1414AY.30.000139
ORF1ab/nsp3539P539PccAccG1113AY.1030.000068
ORF1ab/nsp3539P539PccAccT213AY.1030.000012
ORF1ab/nsp3539P539PccAccT1111B.1.177.90.014647
ORF1ab/nsp3539P539PccAccG1111R.10.00099
ORF1ab/nsp3539P539TCcAAcG710All0.000001
ORF1ab/nsp3539P539TCcaAca310All0.000001
ORF1ab/nsp3539P539SCcaTca1010AY.1030.000062
ORF1ab/nsp3539P539SCcaTca1010AY.250.00006
ORF1ab/nsp3539P539SCcaTca99AY.430.00004
ORF1ab/nsp3539P539PccAccG88AY.1190.000282
ORF1ab/nsp3539P539SCcaTca88AY.3.10.000682
ORF1ab/nsp3539P539SCcaTca88B.10.000073
ORF1ab/nsp3539P539PccAccG77AY.250.000042
ORF1ab/nsp3539P539SCcaTca77AY.440.000043
ORF1ab/nsp3539P539QcCacAa77B.1.1.70.000006
ORF1ab/nsp3539P539PccAccG77B.1.177.120.001062
ORF1ab/nsp3539P539PccAccG77B.1.5250.000792
ORF1ab/nsp3539P539PccAccT57B.1.5960.000436
ORF1ab/nsp3539P539PccAccG27B.1.5960.000174
ORF1ab/nsp3539P539TCcAAcG56B.1.1.70.000004
ORF1ab/nsp3539P539TCcaAca16B.1.1.70.000001
ORF1ab/nsp3539P539SCcaTca66B.1.1770.000079
ORF1ab/nsp3539P539PccAccT35AY.1020.00008
ORF1ab/nsp3539P539PccAccG25AY.1020.000053
ORF1ab/nsp3539P539SCcaTca55AY.1190.000177
ORF1ab/nsp3539P539PccAccG35AY.440.000018
ORF1ab/nsp3539P539PccAccT15AY.440.000006
ORF1ab/nsp3539P539PccAccC15AY.440.000006
ORF1ab/nsp3539P539PccAccT44AY.1090.002959
ORF1ab/nsp3539P539delCCA---44AY.40.000006
ORF1ab/nsp3539P539LcCacTa44AY.40.000006
ORF1ab/nsp3539P539delCCA---44AY.4.50.00043
ORF1ab/nsp3539P539LcCacTa44AY.430.000018
ORF1ab/nsp3539P539PccAccG34AY.610.000314
ORF1ab/nsp3539P539PccAccT14AY.610.000105
ORF1ab/nsp3539P539PccAccT34B.1.10.000054
ORF1ab/nsp3539P539PccAccC14B.1.10.000018
ORF1ab/nsp3539P539delCCA---44B.1.1770.000053
ORF1ab/nsp3539P539PccAccG44B.1.360.000584
ORF1ab/nsp3539P539SCcaTca44B.1.4290.000094
ORF1ab/nsp3539P539SCcaTca33AY.1020.00008
ORF1ab/nsp3539P539SCcaTca33AY.290.000047
ORF1ab/nsp3539P539QcCacAa33B.10.000027
ORF1ab/nsp3539P539PccAccT33B.1.2340.000396
ORF1ab/nsp3539P539PccAccT33B.1.2430.000209
ORF1ab/nsp3539P539LcCacTa33B.1.5640.001278
ORF1ab/nsp3539P539PccAccG23P.10.000032
ORF1ab/nsp3539P539PccAccT13P.10.000016
ORF1ab/nsp3539P539RcCacGa22All0
ORF1ab/nsp3539P539ACcaGca22All0
ORF1ab/nsp3539P539LcCacTa22AY.1030.000012
ORF1ab/nsp3539P539PccAccG12AY.200.000039
ORF1ab/nsp3539P539PccAccC12AY.200.000039
ORF1ab/nsp3539P539PccAccT12AY.390.000025
ORF1ab/nsp3539P539PccAccG12AY.390.000025
ORF1ab/nsp3539P539PccAccT12AY.39.10.00004
ORF1ab/nsp3539P539PccAccG12AY.39.10.00004
ORF1ab/nsp3539P539PccAccG22AY.980.000158
ORF1ab/nsp3539P539LcCacTa22B.10.000018
ORF1ab/nsp3539P539PccAccT22B.1.1.3050.007722
ORF1ab/nsp3539P539LcCacTa22B.1.1770.000026
ORF1ab/nsp3539P539LcCacTa22B.1.20.000018
ORF1ab/nsp3539P539PccAccG22B.1.240.10.05
ORF1ab/nsp3539P539PccAccT22B.1.3690.00057
ORF1ab/nsp3539P539PccAccG12B.1.4290.000024
ORF1ab/nsp3539P539PccAccT12B.1.4290.000024
ORF1ab/nsp3539P539TCcAAcG22B.1.5250.000226
ORF1ab/nsp3539P539LcCacTa22B.1.5950.000522
ORF1ab/nsp3539P539LcCacTa22B.1.617.20.000008
ORF1ab/nsp3539P539QcCacAa22B.1.617.20.000008
ORF1ab/nsp3539P539PccAccC22P.1.40.001953
ORF1ab/nsp3539P539PccAccG110.055556
ORF1ab/nsp3539P539QcCacAa11A.10.000282
ORF1ab/nsp3539P539SCcaTca11A.2.20.001689
ORF1ab/nsp3539P539del1CCa-Ta11All0
ORF1ab/nsp3539P539ECCaGAa11All0
ORF1ab/nsp3539P539del2CCa--a11All0
ORF1ab/nsp3539P539RcCacGa11AY.1000.000046
ORF1ab/nsp3539P539SCcaTca11AY.1000.000046
ORF1ab/nsp3539P539PccAccT11AY.1000.000046
ORF1ab/nsp3539P539ACcaGca11AY.1030.000006
ORF1ab/nsp3539P539SCcaTca11AY.1060.000335
ORF1ab/nsp3539P539SCcaTca11AY.1110.000183
ORF1ab/nsp3539P539delCCA---11AY.1110.000183
ORF1ab/nsp3539P539SCcaTca11AY.1140.000231
ORF1ab/nsp3539P539PccAccG11AY.1180.000063
ORF1ab/nsp3539P539SCcaTca11AY.1180.000063
ORF1ab/nsp3539P539PccAccG11AY.1200.000037
ORF1ab/nsp3539P539SCcaTca11AY.1210.000135
ORF1ab/nsp3539P539SCcaTca11AY.160.00038
ORF1ab/nsp3539P539PccAccG11AY.20.000356
ORF1ab/nsp3539P539SCcaTca11AY.200.000039
ORF1ab/nsp3539P539LcCacTa11AY.200.000039
ORF1ab/nsp3539P539LcCacTa11AY.30.00001
ORF1ab/nsp3539P539PccAccG11AY.300.000396
ORF1ab/nsp3539P539PccAccG11AY.310.018519
ORF1ab/nsp3539P539PccAccG11AY.320.000532
ORF1ab/nsp3539P539SCcaTca11AY.330.000067
ORF1ab/nsp3539P539PccAccG11AY.330.000067
ORF1ab/nsp3539P539LcCacTa11AY.390.000025
ORF1ab/nsp3539P539ACcaGca11AY.40.000002
ORF1ab/nsp3539P539RcCacGa11AY.40.000002
ORF1ab/nsp3539P539TCcaAca11AY.40.000002
ORF1ab/nsp3539P539PccAccG11AY.4.20.000022
ORF1ab/nsp3539P539LcCacTa11AY.4.20.000022
ORF1ab/nsp3539P539LcCacTa11AY.4.2.10.000149
ORF1ab/nsp3539P539ECCaGAa11AY.430.000004
ORF1ab/nsp3539P539LcCacTa11AY.440.000006
ORF1ab/nsp3539P539PccAccT11AY.46.10.001027
ORF1ab/nsp3539P539SCcaTca11AY.50.000021
ORF1ab/nsp3539P539SCcaTca11AY.540.000095
ORF1ab/nsp3539P539LcCAcTT11AY.600.000938
ORF1ab/nsp3539P539PccAccT11AY.640.000595
ORF1ab/nsp3539P539SCcaTca11AY.70.000196
ORF1ab/nsp3539P539PccAccT11AY.740.000116
ORF1ab/nsp3539P539PccAccC11AY.750.000056
ORF1ab/nsp3539P539PccAccT11AY.75.10.00018
ORF1ab/nsp3539P539PccAccG11AY.760.004831
ORF1ab/nsp3539P539PccAccG11AY.770.001127
ORF1ab/nsp3539P539PccAccT11AY.90.000068
ORF1ab/nsp3539P539LcCacTa11AY.9.10.000084
ORF1ab/nsp3539P539PccAccG11AY.9.20.000037
ORF1ab/nsp3539P539PccAccG11AY.930.000273
ORF1ab/nsp3539P539SCcaTca11AY.99.20.000092
ORF1ab/nsp3539P539LcCacTa11B.1.10.000018
ORF1ab/nsp3539P539SCcaTca11B.1.10.000018
ORF1ab/nsp3539P539LcCacTa11B.1.1.100.001115
ORF1ab/nsp3539P539LcCacTa11B.1.1.1740.003378
ORF1ab/nsp3539P539LcCacTa11B.1.1.2140.000055
ORF1ab/nsp3539P539SCcaTca11B.1.1.2140.000055
ORF1ab/nsp3539P539SCcaTca11B.1.1.2220.000204
ORF1ab/nsp3539P539PccAccT11B.1.1.2220.000204
ORF1ab/nsp3539P539SCcaTca11B.1.1.2320.001815
ORF1ab/nsp3539P539SCcaTca11B.1.1.2840.000107
ORF1ab/nsp3539P539PccAccT11B.1.1.3110.000358
ORF1ab/nsp3539P539SCcaTca11B.1.1.330.000421
ORF1ab/nsp3539P539SCcaTca11B.1.1.370.000193
ORF1ab/nsp3539P539PccAccT11B.1.1.390.00051
ORF1ab/nsp3539P539PccAccG11B.1.1.3980.003226
ORF1ab/nsp3539P539LcCacTa11B.1.1.5190.00004
ORF1ab/nsp3539P539delCCA---11B.1.1.5190.00004
ORF1ab/nsp3539P539SCcaTca11B.1.1.630.000386
ORF1ab/nsp3539P539del2CCa--a11B.1.1.70.000001
ORF1ab/nsp3539P539TCcaAca11B.1.1180.006711
ORF1ab/nsp3539P539delCCA---11B.1.1600.000031
ORF1ab/nsp3539P539SCcaTca11B.1.177.150.000631
ORF1ab/nsp3539P539LcCacTa11B.1.177.210.000076
ORF1ab/nsp3539P539QcCacAa11B.1.177.540.000606
ORF1ab/nsp3539P539PccAccT11B.1.177.560.000668
ORF1ab/nsp3539P539SCcaTca11B.1.177.600.000218
ORF1ab/nsp3539P539LcCacTa11B.1.177.70.000165
ORF1ab/nsp3539P539PccAccT11B.1.177.730.000566
ORF1ab/nsp3539P539LcCacTa11B.1.177.820.000477
ORF1ab/nsp3539P539delCCA---11B.1.177.90.001332
ORF1ab/nsp3539P539SCcaTca11B.1.20.000009
ORF1ab/nsp3539P539del1CCa-Ta11B.1.20.000009
ORF1ab/nsp3539P539LcCacTa11B.1.2060.000816
ORF1ab/nsp3539P539PccAccT11B.1.2140.003663
ORF1ab/nsp3539P539PccAccG11B.1.214.20.0006
ORF1ab/nsp3539P539QcCacAa11B.1.2220.001692
ORF1ab/nsp3539P539SCcaTca11B.1.2400.000216
ORF1ab/nsp3539P539LcCacTa11B.1.2400.000216
ORF1ab/nsp3539P539LcCacTa11B.1.2410.000812
ORF1ab/nsp3539P539SCcaTca11B.1.2430.00007
ORF1ab/nsp3539P539PccAccT11B.1.2640.012346
ORF1ab/nsp3539P539PccAccG11B.1.3110.000275
ORF1ab/nsp3539P539SCcaTca11B.1.3200.001245
ORF1ab/nsp3539P539LcCacTa11B.1.3380.008621
ORF1ab/nsp3539P539PccAccG11B.1.3510.00003
ORF1ab/nsp3539P539delCCA---11B.1.360.000146
ORF1ab/nsp3539P539LcCacTa11B.1.36.180.00042
ORF1ab/nsp3539P539delCCA---11B.1.4150.014286
ORF1ab/nsp3539P539SCcaTca11B.1.4160.001269
ORF1ab/nsp3539P539PccAccG11B.1.4220.000812
ORF1ab/nsp3539P539PccAccT11B.1.4360.001029
ORF1ab/nsp3539P539SCcaTca11B.1.438.10.000107
ORF1ab/nsp3539P539QcCacAa11B.1.4620.007246
ORF1ab/nsp3539P539PccAccT11B.1.5090.000866
ORF1ab/nsp3539P539SCcaTca11B.1.5170.000427
ORF1ab/nsp3539P539SCcaTca11B.1.5260.000024
ORF1ab/nsp3539P539PccAccG11B.1.5370.02
ORF1ab/nsp3539P539SCcaTca11B.1.5640.000426
ORF1ab/nsp3539P539LcCacTa11B.1.5740.002151
ORF1ab/nsp3539P539LcCacTa11B.1.5760.000907
ORF1ab/nsp3539P539LcCacTa11B.1.5800.004065
ORF1ab/nsp3539P539PccAccT11B.1.5950.000261
ORF1ab/nsp3539P539SCcaTca11B.1.5960.000087
ORF1ab/nsp3539P539delCCA---11B.1.617.20.000004
ORF1ab/nsp3539P539PccAccG11B.1.6360.006711
ORF1ab/nsp3539P539SCcaTca11C.160.00106
ORF1ab/nsp3539P539LcCacTa11C.20.016129
ORF1ab/nsp3539P539PccAccG11C.370.000116
ORF1ab/nsp3539P539PccAccT11D.20.000075
ORF1ab/nsp3539P539LcCacTa11D.20.000075
ORF1ab/nsp3539P539SCcaTca11P.10.000016
ORF1ab/nsp3539P539LcCacTa11P.1.140.000048
ORF1ab/nsp3539P539SCcaTca11P.1.140.000048
ORF1ab/nsp3539P539PccAccT11P.1.170.000162
ORF1ab/nsp3539P539delCCA---11U.30.003861