CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 534 | A534A | A1352A | syn | gcC | gcT | 33991 | 33600 | 0.988497 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534A | A1352A | syn | gcC | gcA | 33991 | 376 | 0.0110618 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534A | A1352A | syn | gcC | gcG | 33991 | 15 | 0.000441293 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534V | A1352V | nonsyn | gCc | gTc | 10961 | 10898 | 0.994252 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534V | A1352V | nonsyn | gCC | gTT | 10961 | 63 | 0.00574765 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534T | A1352T | nonsyn | Gcc | Acc | 1181 | 1180 | 0.999153 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534T | A1352T | nonsyn | GcC | AcT | 1181 | 1 | 0.00084674 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534S | A1352S | nonsyn | Gcc | Tcc | 125 | 124 | 0.992 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534S | A1352S | nonsyn | GCc | AGc | 125 | 1 | 0.008 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534D | A1352D | nonsyn | gCc | gAc | 55 | 55 | 1 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534P | A1352P | nonsyn | Gcc | Ccc | 50 | 50 | 1 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534del | A1352del | del | GCC | --- | 41 | 41 | 1 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534H | A1352H | nonsyn | GCc | CAc | 12 | 12 | 1 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534G | A1352G | nonsyn | gCc | gGc | 12 | 11 | 0.916667 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534G | A1352G | nonsyn | gCC | gGG | 12 | 1 | 0.0833333 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534C | A1352C | nonsyn | GCc | TGc | 5 | 5 | 1 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534del1 | A1352del1 | del | Gcc | -cc | 5 | 3 | 0.6 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534del1 | A1352del1 | del | gCc | g-c | 5 | 2 | 0.4 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534F | A1352F | nonsyn | GCc | TTc | 1 | 1 | 1 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534K | A1352K | nonsyn | GCC | AAA | 1 | 1 | 1 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534E | A1352E | nonsyn | gCC | gAA | 1 | 1 | 1 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534Y | A1352Y | nonsyn | GCc | TAc | 1 | 1 | 1 | 4319-4321 |
ORF1ab/nsp3 | 534 | A534I | A1352I | nonsyn | GCc | ATc | 1 | 1 | 1 | 4319-4321 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 33600 | 33991 | All | 0.006426 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 376 | 33991 | All | 0.000072 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcG | 15 | 33991 | All | 0.000003 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 11812 | 11812 | AY.118 | 0.740008 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 11787 | 11788 | AY.9.1 | 0.986855 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 11788 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 10898 | 10961 | All | 0.002084 |
ORF1ab/nsp3 | 534 | A534V | gCC | gTT | 63 | 10961 | All | 0.000012 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3427 | 3655 | AY.4 | 0.005334 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 228 | 3655 | AY.4 | 0.000355 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1677 | 1682 | AY.4 | 0.00261 |
ORF1ab/nsp3 | 534 | A534V | gCC | gTT | 5 | 1682 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1648 | 1648 | B.1.1.7 | 0.001475 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1352 | 1365 | B.1.1.7 | 0.00121 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 7 | 1365 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcG | 6 | 1365 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1180 | 1181 | All | 0.000226 |
ORF1ab/nsp3 | 534 | A534T | GcC | AcT | 1 | 1181 | All | 0 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1154 | 1154 | AY.63 | 0.446422 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 660 | 660 | AY.4.2 | 0.014315 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 615 | 615 | B.1.617.2 | 0.002316 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 581 | 581 | AY.43 | 0.002574 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 423 | 423 | AY.88 | 0.374005 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 377 | 377 | AY.48 | 0.175349 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 359 | 361 | AY.25 | 0.002159 |
ORF1ab/nsp3 | 534 | A534V | gCC | gTT | 2 | 361 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 342 | 342 | AY.26 | 0.009682 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 333 | 333 | P.1.1 | 0.105781 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 328 | 328 | AY.103 | 0.002037 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 302 | 305 | B.1.2 | 0.002659 |
ORF1ab/nsp3 | 534 | A534V | gCC | gTT | 3 | 305 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 278 | 296 | B.1.617.2 | 0.001047 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 17 | 296 | B.1.617.2 | 0.000064 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcG | 1 | 296 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 291 | 291 | AY.9.2 | 0.010688 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 259 | 259 | AY.103 | 0.001608 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 252 | 252 | B.1 | 0.002308 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 243 | 243 | B.1.1 | 0.004408 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 212 | 212 | AY.4 | 0.00033 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 192 | 192 | AY.95 | 0.146119 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 172 | 172 | B.1.2 | 0.001515 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 163 | 163 | AY.44 | 0.000992 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 159 | 159 | AY.120 | 0.005911 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 149 | 150 | AY.25 | 0.000896 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 150 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 129 | 129 | B.1.637 | 0.009426 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 122 | 126 | AY.43 | 0.000541 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 4 | 126 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 124 | 125 | All | 0.000024 |
ORF1ab/nsp3 | 534 | A534S | GCc | AGc | 1 | 125 | All | 0 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 123 | 125 | B.1.12 | 0.984 |
ORF1ab/nsp3 | 534 | A534V | gCC | gTT | 2 | 125 | B.1.12 | 0.016 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 124 | 124 | B.1.177.21 | 0.009482 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 119 | 119 | AY.119 | 0.004202 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 114 | 116 | B.1.177 | 0.001501 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 2 | 116 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 109 | 109 | B.1 | 0.000998 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 101 | 101 | AY.33 | 0.006745 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 101 | 101 | AY.44 | 0.000615 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 101 | 101 | P.1 | 0.001591 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 100 | 100 | B.1.177 | 0.001317 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 99 | 99 | AY.3 | 0.000985 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 96 | 96 | A.2.5 | 0.047904 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 90 | 91 | AY.39 | 0.002224 |
ORF1ab/nsp3 | 534 | A534V | gCC | gTT | 1 | 91 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 86 | 86 | B.1.1.214 | 0.004769 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 77 | 80 | B.1 | 0.000705 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 3 | 80 | B.1 | 0.000027 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 79 | 79 | B.1.526 | 0.001857 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 74 | 74 | AY.39 | 0.001829 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 73 | 73 | AY.3 | 0.000726 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 72 | 72 | P.1.16 | 0.026936 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 70 | 70 | B.1.1.519 | 0.00278 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 65 | 65 | B.1.526 | 0.001528 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 62 | 62 | AY.120.2 | 0.079692 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 62 | 62 | B.1.438.1 | 0.00665 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 60 | 60 | AY.34 | 0.005818 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 60 | 60 | P.1 | 0.000945 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 59 | 59 | A.15 | 0.936508 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 56 | 56 | AY.102 | 0.001485 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 55 | 55 | All | 0.000011 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 55 | 55 | AY.39.2 | 0.084746 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 54 | 54 | AY.20 | 0.002099 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 54 | 54 | AY.5 | 0.001115 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 54 | 54 | B.1.1 | 0.00098 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 53 | 53 | B.1.637 | 0.003873 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 50 | 50 | All | 0.00001 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 49 | 49 | B.1.243 | 0.00341 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 46 | 46 | AY.7.1 | 0.005184 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 46 | 46 | B.1.617.2 | 0.000173 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 44 | 45 | AY.102 | 0.001167 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 45 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 534 | A534V | gCC | gTT | 45 | 45 | AY.9.1 | 0.003768 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 45 | 45 | B.1.234 | 0.005937 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 45 | 45 | B.1.351.2 | 0.013616 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 42 | 42 | B.1.1.431 | 0.677419 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 42 | 42 | B.1.1.524 | 0.875 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 42 | 42 | C.37 | 0.004875 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 41 | 41 | All | 0.000008 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 39 | 41 | P.1.14 | 0.001864 |
ORF1ab/nsp3 | 534 | A534V | gCC | gTT | 2 | 41 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 40 | 40 | AY.116 | 0.011471 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 40 | 40 | B.1.160 | 0.001248 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 37 | 37 | B.1.147 | 0.027967 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 37 | 37 | B.1.177.7 | 0.0061 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 36 | 36 | B.1.1.7 | 0.000032 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 35 | 35 | AY.9.2 | 0.001286 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 35 | 35 | B.1.1.159 | 0.163551 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 35 | 35 | B.1.243.1 | 0.777778 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 34 | 34 | AY.29 | 0.000536 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 34 | 34 | B.1.1.1 | 0.011107 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 33 | 33 | B.1.427 | 0.001666 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 31 | 31 | A.2.5.2 | 0.048742 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 31 | 31 | AY.121 | 0.004195 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 31 | 31 | AY.98.1 | 0.001501 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 30 | 30 | R.1 | 0.0027 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 29 | 29 | B.1.351 | 0.000862 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 27 | 28 | AY.69 | 0.00504 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 28 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 23 | 28 | B.1.351 | 0.000684 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 5 | 28 | B.1.351 | 0.000149 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 23 | 28 | B.1.36 | 0.003356 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 5 | 28 | B.1.36 | 0.00073 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 27 | 27 | AY.26 | 0.000764 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 27 | 27 | AY.42 | 0.001086 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 27 | 27 | B.1.258.14 | 0.026471 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 26 | 26 | AY.4.5 | 0.002795 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 26 | 26 | AY.46 | 0.002706 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 26 | 26 | B.1.429 | 0.000612 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 22 | 26 | B.1.525 | 0.00249 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcG | 4 | 26 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 26 | 26 | B.1.542 | 0.8125 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 25 | 25 | AY.100 | 0.00115 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 23 | 25 | AY.100 | 0.001058 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 2 | 25 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 25 | 25 | AY.110 | 0.002817 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 24 | 24 | AY.33 | 0.001603 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 24 | 24 | AY.4.1 | 0.017699 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 24 | 24 | B.1.429 | 0.000565 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 23 | 23 | AY.20 | 0.000894 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 23 | 23 | AY.5 | 0.000475 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 23 | 23 | AY.5.4 | 0.006364 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 23 | 23 | B.1.36 | 0.003356 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 22 | 22 | AY.111 | 0.004029 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 22 | 22 | B.1.617.2 | 0.000083 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 21 | 21 | B.1.2 | 0.000185 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 20 | 20 | AY.119 | 0.000706 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 20 | 20 | AY.45 | 0.002434 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 20 | 20 | AY.47 | 0.000622 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 20 | 20 | C.37 | 0.002321 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 19 | 19 | B.1.1.311 | 0.006805 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 18 | 18 | AY.23 | 0.001255 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 18 | 18 | B.1.177.4 | 0.003799 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 18 | 18 | B.1.177.5 | 0.02236 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 18 | 18 | B.1.311 | 0.004942 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 18 | 18 | P.1.14 | 0.00086 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 17 | 17 | AY.34 | 0.001648 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 17 | 17 | AY.39.1 | 0.000673 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 17 | 17 | AY.66 | 0.018182 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 17 | 17 | AY.69 | 0.003173 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 16 | 16 | AY.23 | 0.001116 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 16 | 16 | AY.3 | 0.000159 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 16 | 16 | AY.9 | 0.001082 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 16 | 16 | B.1.160 | 0.000499 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 15 | 15 | AY.105 | 0.009646 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 15 | 15 | AY.39.1 | 0.000594 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 15 | 15 | AY.46.6 | 0.001083 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 14 | 14 | AY.37 | 0.004425 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 14 | 14 | AY.98 | 0.001106 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 14 | 14 | AY.99.2 | 0.00129 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 13 | 13 | B.1.177.57 | 0.003653 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 13 | 13 | B.1.243 | 0.000905 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 13 | 13 | Q.3 | 0.001885 |
ORF1ab/nsp3 | 534 | A534H | GCc | CAc | 12 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 534 | A534G | gCc | gGc | 11 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 534 | A534G | gCC | gGG | 1 | 12 | All | 0 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 11 | 12 | AT.1 | 0.05641 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 12 | AT.1 | 0.005128 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 12 | 12 | AY.36 | 0.001779 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 12 | 12 | AY.6 | 0.000494 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 12 | 12 | AY.74 | 0.001388 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 12 | 12 | AY.75.1 | 0.002164 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 12 | 12 | AY.99.2 | 0.001106 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 12 | 12 | B.1.1 | 0.000218 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 12 | 12 | B.1.240 | 0.002587 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 12 | 12 | P.1.4 | 0.011719 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 11 | 11 | A | 0.004257 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 11 | 11 | AY.109 | 0.008136 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 10 | 11 | AY.117 | 0.000845 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 11 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 10 | 11 | AY.46 | 0.001041 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 11 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 11 | 11 | B.1.1.37 | 0.002122 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 11 | 11 | B.1.234 | 0.001451 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 11 | 11 | R.1 | 0.00099 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 10 | 10 | AY.50 | 0.007994 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 10 | 10 | B.1.1.269 | 0.013532 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 10 | 10 | B.1.177.7 | 0.001649 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 10 | 10 | B.1.258.17 | 0.00104 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 10 | 10 | B.1.596 | 0.000871 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 7 | 10 | B.1.621 | 0.00062 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcG | 2 | 10 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 10 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 10 | 10 | B.1.628 | 0.003524 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 9 | 9 | AY.46.4 | 0.001481 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 9 | 9 | AY.84 | 0.003937 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 9 | 9 | AY.90 | 0.00616 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 9 | 9 | B.1.369 | 0.002567 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 9 | 9 | B.1.596 | 0.000784 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 8 | 8 | AY.105 | 0.005145 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 8 | 8 | AY.111 | 0.001465 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 8 | 8 | AY.114 | 0.001849 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 8 | 8 | AY.116 | 0.002294 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 8 | 8 | AY.121 | 0.001083 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 8 | 8 | B.1.1.214 | 0.000444 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 8 | 8 | B.1.1.284 | 0.000859 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 8 | 8 | B.1.1.356 | 0.068376 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 8 | 8 | B.1.1.50 | 0.005431 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 8 | 8 | B.1.561 | 0.003176 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 8 | 8 | P.1.17 | 0.001294 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 7 | 7 | AY.120.2.1 | 0.003488 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 6 | 7 | AY.65 | 0.003198 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 7 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 7 | 7 | AY.85 | 0.00299 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 7 | 7 | B.1.1.33 | 0.002946 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 6 | 6 | B | 0.000767 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 6 | 6 | B.1.1.216 | 0.005343 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 6 | 6 | B.1.1.273 | 0.040541 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 6 | 6 | B.1.1.306 | 0.00263 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 6 | 6 | B.1.1.368 | 0.018519 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 6 | 6 | B.1.160.11 | 0.034286 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 6 | 6 | B.1.177.74 | 0.090909 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 6 | 6 | B.1.177.80 | 0.011472 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 6 | 6 | B.1.265 | 0.007624 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 6 | 6 | B.1.420 | 0.0625 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 6 | 6 | B.1.428 | 0.006122 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 6 | 6 | B.1.627 | 0.012121 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp3 | 534 | A534C | GCc | TGc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 534 | A534del1 | Gcc | -cc | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 534 | A534del1 | gCc | g-c | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 5 | 5 | AY.107 | 0.00233 |
ORF1ab/nsp3 | 534 | A534V | gCC | gTT | 3 | 5 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 5 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 5 | 5 | AY.49 | 0.015974 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 5 | 5 | AY.64 | 0.002976 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 5 | 5 | AY.71 | 0.002375 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 5 | 5 | AZ.3 | 0.007599 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 4 | 5 | B | 0.000511 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 5 | B | 0.000128 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 5 | 5 | B.1.1.294 | 0.006329 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 5 | 5 | B.1.177.35 | 0.003455 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 5 | 5 | B.1.177.60 | 0.001092 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 5 | 5 | B.1.391 | 0.005637 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 5 | 5 | B.1.400 | 0.002145 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 4 | 5 | B.1.466.2 | 0.001565 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 5 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 5 | 5 | B.1.561 | 0.001985 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 4 | 4 | A.2.4 | 0.013468 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | AY.35 | 0.000932 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | B.1.1.176 | 0.001757 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | B.1.1.5 | 0.033333 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | B.1.1.72 | 0.121212 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | B.1.165 | 0.047619 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 4 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 2 | 4 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | B.1.36.19 | 0.037037 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | B.1.36.22 | 0.004831 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 4 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 4 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 4 | 4 | B.1.523 | 0.009804 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | B.1.612 | 0.01061 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 4 | 4 | B.1.619 | 0.003484 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | B.40 | 0.001457 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 4 | 4 | C.26 | 0.029412 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | P.1.2 | 0.004624 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp3 | 534 | A534G | gCc | gGc | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 534 | A534A | gcC | gcG | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 534 | A534G | gCC | gGG | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 534 | A534S | GCc | AGc | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 3 | 3 | A.2.4 | 0.010101 |
ORF1ab/nsp3 | 534 | A534H | GCc | CAc | 3 | 3 | A.2.4 | 0.010101 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | A.27 | 0.004967 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | AD.2 | 0.000657 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 3 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 3 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | AY.87 | 0.002498 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | AY.93 | 0.000819 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | AY.94 | 0.001328 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | B.1.1.269 | 0.00406 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | B.1.1.277 | 0.002276 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | B.1.1.420 | 0.003018 |
ORF1ab/nsp3 | 534 | A534G | gCc | gGc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | B.1.160.16 | 0.002788 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | B.1.160.22 | 0.02027 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 3 | 3 | B.1.232 | 0.001612 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | B.1.36.1 | 0.003421 |
ORF1ab/nsp3 | 534 | A534G | gCc | gGc | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | B.1.459 | 0.012245 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | B.1.469 | 0.01083 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | B.1.524 | 0.004219 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | B.1.6 | 0.051724 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 3 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 3 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | A.2.5.1 | 0.009615 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.4.1 | 0.001475 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 534 | A534C | GCc | TGc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 2 | 2 | B.1.1.298 | 0.001724 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.1.411 | 0.029412 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.1.44 | 0.004819 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.177.19 | 0.002861 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 534 | A534G | gCc | gGc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.314 | 0.015038 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.342 | 0.2 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.346 | 0.002621 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.36.7 | 0.008 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.39 | 0.007812 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.478 | 0.023529 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.493 | 0.051282 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 534 | A534del1 | Gcc | -cc | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.8 | 0.003945 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | B.1.9 | 0.012346 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | L.3 | 0.007092 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 2 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 2 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 534 | A534C | GCc | TGc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 534 | A534Y | GCc | TAc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | A.18 | 0.05 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 534 | A534F | GCc | TTc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 534 | A534I | GCc | ATc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 534 | A534K | GCC | AAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 534 | A534Y | GCc | TAc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 534 | A534E | gCC | gAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AS.2 | 0.015625 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp3 | 534 | A534H | GCc | CAc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 534 | A534T | GcC | AcT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 534 | A534C | GCc | TGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.5.1 | 0.003759 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 534 | A534C | GCc | TGc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 534 | A534I | GCc | ATc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 534 | A534H | GCc | CAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 534 | A534K | GCC | AAA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 534 | A534del1 | Gcc | -cc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | B.1.1.285 | 0.006536 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.320 | 0.018182 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 534 | A534H | GCc | CAc | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.450 | 0.034483 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.512 | 0.028571 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 534 | A534E | gCC | gAA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 534 | A534H | GCc | CAc | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 534 | A534G | gCc | gGc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 534 | A534del1 | gCc | g-c | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 534 | A534H | GCc | CAc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 534 | A534H | GCc | CAc | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 534 | A534del1 | gCc | g-c | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.406 | 0.006061 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 534 | A534H | GCc | CAc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp3 | 534 | A534H | GCc | CAc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.463 | 0.008065 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.493 | 0.025641 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.495 | 0.009091 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.579 | 0.011236 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.603 | 0.010638 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp3 | 534 | A534F | GCc | TTc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcG | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcA | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 534 | A534H | GCc | CAc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 534 | A534P | Gcc | Ccc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 534 | A534T | Gcc | Acc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp3 | 534 | A534D | gCc | gAc | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 534 | A534S | Gcc | Tcc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 534 | A534del | GCC | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 534 | A534A | gcC | gcT | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 534 | A534V | gCc | gTc | 1 | 1 | W.2 | 0.004831 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|