CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 534

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	534	A534A	A1352A	syn	gcC	gcT	33991	33600	0.988497	4319-4321
ORF1ab/nsp3	534	A534A	A1352A	syn	gcC	gcA	33991	376	0.0110618	4319-4321
ORF1ab/nsp3	534	A534A	A1352A	syn	gcC	gcG	33991	15	0.000441293	4319-4321
ORF1ab/nsp3	534	A534V	A1352V	nonsyn	gCc	gTc	10961	10898	0.994252	4319-4321
ORF1ab/nsp3	534	A534V	A1352V	nonsyn	gCC	gTT	10961	63	0.00574765	4319-4321
ORF1ab/nsp3	534	A534T	A1352T	nonsyn	Gcc	Acc	1181	1180	0.999153	4319-4321
ORF1ab/nsp3	534	A534T	A1352T	nonsyn	GcC	AcT	1181	1	0.00084674	4319-4321
ORF1ab/nsp3	534	A534S	A1352S	nonsyn	Gcc	Tcc	125	124	0.992	4319-4321
ORF1ab/nsp3	534	A534S	A1352S	nonsyn	GCc	AGc	125	1	0.008	4319-4321
ORF1ab/nsp3	534	A534D	A1352D	nonsyn	gCc	gAc	55	55	1	4319-4321
ORF1ab/nsp3	534	A534P	A1352P	nonsyn	Gcc	Ccc	50	50	1	4319-4321
ORF1ab/nsp3	534	A534del	A1352del	del	GCC	---	41	41	1	4319-4321
ORF1ab/nsp3	534	A534H	A1352H	nonsyn	GCc	CAc	12	12	1	4319-4321
ORF1ab/nsp3	534	A534G	A1352G	nonsyn	gCc	gGc	12	11	0.916667	4319-4321
ORF1ab/nsp3	534	A534G	A1352G	nonsyn	gCC	gGG	12	1	0.0833333	4319-4321
ORF1ab/nsp3	534	A534C	A1352C	nonsyn	GCc	TGc	5	5	1	4319-4321
ORF1ab/nsp3	534	A534del1	A1352del1	del	Gcc	-cc	5	3	0.6	4319-4321
ORF1ab/nsp3	534	A534del1	A1352del1	del	gCc	g-c	5	2	0.4	4319-4321
ORF1ab/nsp3	534	A534F	A1352F	nonsyn	GCc	TTc	1	1	1	4319-4321
ORF1ab/nsp3	534	A534K	A1352K	nonsyn	GCC	AAA	1	1	1	4319-4321
ORF1ab/nsp3	534	A534E	A1352E	nonsyn	gCC	gAA	1	1	1	4319-4321
ORF1ab/nsp3	534	A534Y	A1352Y	nonsyn	GCc	TAc	1	1	1	4319-4321
ORF1ab/nsp3	534	A534I	A1352I	nonsyn	GCc	ATc	1	1	1	4319-4321

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	534	A534A	gcC	gcT	33600	33991	All	0.006426
ORF1ab/nsp3	534	A534A	gcC	gcA	376	33991	All	0.000072
ORF1ab/nsp3	534	A534A	gcC	gcG	15	33991	All	0.000003
ORF1ab/nsp3	534	A534A	gcC	gcT	11812	11812	AY.118	0.740008
ORF1ab/nsp3	534	A534A	gcC	gcT	11787	11788	AY.9.1	0.986855
ORF1ab/nsp3	534	A534A	gcC	gcA	1	11788	AY.9.1	0.000084
ORF1ab/nsp3	534	A534V	gCc	gTc	10898	10961	All	0.002084
ORF1ab/nsp3	534	A534V	gCC	gTT	63	10961	All	0.000012
ORF1ab/nsp3	534	A534A	gcC	gcT	3427	3655	AY.4	0.005334
ORF1ab/nsp3	534	A534A	gcC	gcA	228	3655	AY.4	0.000355
ORF1ab/nsp3	534	A534V	gCc	gTc	1677	1682	AY.4	0.00261
ORF1ab/nsp3	534	A534V	gCC	gTT	5	1682	AY.4	0.000008
ORF1ab/nsp3	534	A534V	gCc	gTc	1648	1648	B.1.1.7	0.001475
ORF1ab/nsp3	534	A534A	gcC	gcT	1352	1365	B.1.1.7	0.00121
ORF1ab/nsp3	534	A534A	gcC	gcA	7	1365	B.1.1.7	0.000006
ORF1ab/nsp3	534	A534A	gcC	gcG	6	1365	B.1.1.7	0.000005
ORF1ab/nsp3	534	A534T	Gcc	Acc	1180	1181	All	0.000226
ORF1ab/nsp3	534	A534T	GcC	AcT	1	1181	All	0
ORF1ab/nsp3	534	A534A	gcC	gcT	1154	1154	AY.63	0.446422
ORF1ab/nsp3	534	A534V	gCc	gTc	660	660	AY.4.2	0.014315
ORF1ab/nsp3	534	A534V	gCc	gTc	615	615	B.1.617.2	0.002316
ORF1ab/nsp3	534	A534V	gCc	gTc	581	581	AY.43	0.002574
ORF1ab/nsp3	534	A534T	Gcc	Acc	423	423	AY.88	0.374005
ORF1ab/nsp3	534	A534A	gcC	gcT	377	377	AY.48	0.175349
ORF1ab/nsp3	534	A534V	gCc	gTc	359	361	AY.25	0.002159
ORF1ab/nsp3	534	A534V	gCC	gTT	2	361	AY.25	0.000012
ORF1ab/nsp3	534	A534V	gCc	gTc	342	342	AY.26	0.009682
ORF1ab/nsp3	534	A534V	gCc	gTc	333	333	P.1.1	0.105781
ORF1ab/nsp3	534	A534V	gCc	gTc	328	328	AY.103	0.002037
ORF1ab/nsp3	534	A534V	gCc	gTc	302	305	B.1.2	0.002659
ORF1ab/nsp3	534	A534V	gCC	gTT	3	305	B.1.2	0.000026
ORF1ab/nsp3	534	A534A	gcC	gcT	278	296	B.1.617.2	0.001047
ORF1ab/nsp3	534	A534A	gcC	gcA	17	296	B.1.617.2	0.000064
ORF1ab/nsp3	534	A534A	gcC	gcG	1	296	B.1.617.2	0.000004
ORF1ab/nsp3	534	A534A	gcC	gcT	291	291	AY.9.2	0.010688
ORF1ab/nsp3	534	A534A	gcC	gcT	259	259	AY.103	0.001608
ORF1ab/nsp3	534	A534T	Gcc	Acc	252	252	B.1	0.002308
ORF1ab/nsp3	534	A534V	gCc	gTc	243	243	B.1.1	0.004408
ORF1ab/nsp3	534	A534T	Gcc	Acc	212	212	AY.4	0.00033
ORF1ab/nsp3	534	A534V	gCc	gTc	192	192	AY.95	0.146119
ORF1ab/nsp3	534	A534A	gcC	gcT	172	172	B.1.2	0.001515
ORF1ab/nsp3	534	A534V	gCc	gTc	163	163	AY.44	0.000992
ORF1ab/nsp3	534	A534V	gCc	gTc	159	159	AY.120	0.005911
ORF1ab/nsp3	534	A534A	gcC	gcT	149	150	AY.25	0.000896
ORF1ab/nsp3	534	A534A	gcC	gcA	1	150	AY.25	0.000006
ORF1ab/nsp3	534	A534V	gCc	gTc	129	129	B.1.637	0.009426
ORF1ab/nsp3	534	A534A	gcC	gcT	122	126	AY.43	0.000541
ORF1ab/nsp3	534	A534A	gcC	gcA	4	126	AY.43	0.000018
ORF1ab/nsp3	534	A534S	Gcc	Tcc	124	125	All	0.000024
ORF1ab/nsp3	534	A534S	GCc	AGc	1	125	All	0
ORF1ab/nsp3	534	A534V	gCc	gTc	123	125	B.1.12	0.984
ORF1ab/nsp3	534	A534V	gCC	gTT	2	125	B.1.12	0.016
ORF1ab/nsp3	534	A534V	gCc	gTc	124	124	B.1.177.21	0.009482
ORF1ab/nsp3	534	A534A	gcC	gcT	119	119	AY.119	0.004202
ORF1ab/nsp3	534	A534A	gcC	gcT	114	116	B.1.177	0.001501
ORF1ab/nsp3	534	A534A	gcC	gcA	2	116	B.1.177	0.000026
ORF1ab/nsp3	534	A534V	gCc	gTc	109	109	B.1	0.000998
ORF1ab/nsp3	534	A534V	gCc	gTc	101	101	AY.33	0.006745
ORF1ab/nsp3	534	A534A	gcC	gcT	101	101	AY.44	0.000615
ORF1ab/nsp3	534	A534V	gCc	gTc	101	101	P.1	0.001591
ORF1ab/nsp3	534	A534V	gCc	gTc	100	100	B.1.177	0.001317
ORF1ab/nsp3	534	A534V	gCc	gTc	99	99	AY.3	0.000985
ORF1ab/nsp3	534	A534V	gCc	gTc	96	96	A.2.5	0.047904
ORF1ab/nsp3	534	A534V	gCc	gTc	90	91	AY.39	0.002224
ORF1ab/nsp3	534	A534V	gCC	gTT	1	91	AY.39	0.000025
ORF1ab/nsp3	534	A534A	gcC	gcT	86	86	B.1.1.214	0.004769
ORF1ab/nsp3	534	A534A	gcC	gcT	77	80	B.1	0.000705
ORF1ab/nsp3	534	A534A	gcC	gcA	3	80	B.1	0.000027
ORF1ab/nsp3	534	A534A	gcC	gcT	79	79	B.1.526	0.001857
ORF1ab/nsp3	534	A534A	gcC	gcT	74	74	AY.39	0.001829
ORF1ab/nsp3	534	A534A	gcC	gcT	73	73	AY.3	0.000726
ORF1ab/nsp3	534	A534A	gcC	gcT	72	72	P.1.16	0.026936
ORF1ab/nsp3	534	A534V	gCc	gTc	70	70	B.1.1.519	0.00278
ORF1ab/nsp3	534	A534V	gCc	gTc	65	65	B.1.526	0.001528
ORF1ab/nsp3	534	A534V	gCc	gTc	62	62	AY.120.2	0.079692
ORF1ab/nsp3	534	A534A	gcC	gcT	62	62	B.1.438.1	0.00665
ORF1ab/nsp3	534	A534V	gCc	gTc	60	60	AY.34	0.005818
ORF1ab/nsp3	534	A534A	gcC	gcT	60	60	P.1	0.000945
ORF1ab/nsp3	534	A534A	gcC	gcT	59	59	A.15	0.936508
ORF1ab/nsp3	534	A534V	gCc	gTc	56	56	AY.102	0.001485
ORF1ab/nsp3	534	A534D	gCc	gAc	55	55	All	0.000011
ORF1ab/nsp3	534	A534V	gCc	gTc	55	55	AY.39.2	0.084746
ORF1ab/nsp3	534	A534V	gCc	gTc	54	54	AY.20	0.002099
ORF1ab/nsp3	534	A534V	gCc	gTc	54	54	AY.5	0.001115
ORF1ab/nsp3	534	A534A	gcC	gcT	54	54	B.1.1	0.00098
ORF1ab/nsp3	534	A534A	gcC	gcT	53	53	B.1.637	0.003873
ORF1ab/nsp3	534	A534P	Gcc	Ccc	50	50	All	0.00001
ORF1ab/nsp3	534	A534A	gcC	gcT	49	49	B.1.243	0.00341
ORF1ab/nsp3	534	A534V	gCc	gTc	46	46	AY.7.1	0.005184
ORF1ab/nsp3	534	A534T	Gcc	Acc	46	46	B.1.617.2	0.000173
ORF1ab/nsp3	534	A534A	gcC	gcT	44	45	AY.102	0.001167
ORF1ab/nsp3	534	A534A	gcC	gcA	1	45	AY.102	0.000027
ORF1ab/nsp3	534	A534V	gCC	gTT	45	45	AY.9.1	0.003768
ORF1ab/nsp3	534	A534A	gcC	gcT	45	45	B.1.234	0.005937
ORF1ab/nsp3	534	A534V	gCc	gTc	45	45	B.1.351.2	0.013616
ORF1ab/nsp3	534	A534T	Gcc	Acc	42	42	B.1.1.431	0.677419
ORF1ab/nsp3	534	A534V	gCc	gTc	42	42	B.1.1.524	0.875
ORF1ab/nsp3	534	A534A	gcC	gcT	42	42	C.37	0.004875
ORF1ab/nsp3	534	A534del	GCC	---	41	41	All	0.000008
ORF1ab/nsp3	534	A534V	gCc	gTc	39	41	P.1.14	0.001864
ORF1ab/nsp3	534	A534V	gCC	gTT	2	41	P.1.14	0.000096
ORF1ab/nsp3	534	A534T	Gcc	Acc	40	40	AY.116	0.011471
ORF1ab/nsp3	534	A534V	gCc	gTc	40	40	B.1.160	0.001248
ORF1ab/nsp3	534	A534A	gcC	gcT	37	37	B.1.147	0.027967
ORF1ab/nsp3	534	A534T	Gcc	Acc	37	37	B.1.177.7	0.0061
ORF1ab/nsp3	534	A534S	Gcc	Tcc	36	36	B.1.1.7	0.000032
ORF1ab/nsp3	534	A534V	gCc	gTc	35	35	AY.9.2	0.001286
ORF1ab/nsp3	534	A534V	gCc	gTc	35	35	B.1.1.159	0.163551
ORF1ab/nsp3	534	A534A	gcC	gcT	35	35	B.1.243.1	0.777778
ORF1ab/nsp3	534	A534V	gCc	gTc	34	34	AY.29	0.000536
ORF1ab/nsp3	534	A534A	gcC	gcT	34	34	B.1.1.1	0.011107
ORF1ab/nsp3	534	A534V	gCc	gTc	33	33	B.1.427	0.001666
ORF1ab/nsp3	534	A534A	gcC	gcT	31	31	A.2.5.2	0.048742
ORF1ab/nsp3	534	A534V	gCc	gTc	31	31	AY.121	0.004195
ORF1ab/nsp3	534	A534V	gCc	gTc	31	31	AY.98.1	0.001501
ORF1ab/nsp3	534	A534A	gcC	gcT	30	30	R.1	0.0027
ORF1ab/nsp3	534	A534V	gCc	gTc	29	29	B.1.351	0.000862
ORF1ab/nsp3	534	A534A	gcC	gcA	27	28	AY.69	0.00504
ORF1ab/nsp3	534	A534A	gcC	gcT	1	28	AY.69	0.000187
ORF1ab/nsp3	534	A534A	gcC	gcT	23	28	B.1.351	0.000684
ORF1ab/nsp3	534	A534A	gcC	gcA	5	28	B.1.351	0.000149
ORF1ab/nsp3	534	A534A	gcC	gcA	23	28	B.1.36	0.003356
ORF1ab/nsp3	534	A534A	gcC	gcT	5	28	B.1.36	0.00073
ORF1ab/nsp3	534	A534A	gcC	gcT	27	27	AY.26	0.000764
ORF1ab/nsp3	534	A534V	gCc	gTc	27	27	AY.42	0.001086
ORF1ab/nsp3	534	A534A	gcC	gcT	27	27	B.1.258.14	0.026471
ORF1ab/nsp3	534	A534V	gCc	gTc	26	26	AY.4.5	0.002795
ORF1ab/nsp3	534	A534V	gCc	gTc	26	26	AY.46	0.002706
ORF1ab/nsp3	534	A534V	gCc	gTc	26	26	B.1.429	0.000612
ORF1ab/nsp3	534	A534A	gcC	gcT	22	26	B.1.525	0.00249
ORF1ab/nsp3	534	A534A	gcC	gcG	4	26	B.1.525	0.000453
ORF1ab/nsp3	534	A534A	gcC	gcT	26	26	B.1.542	0.8125
ORF1ab/nsp3	534	A534V	gCc	gTc	25	25	AY.100	0.00115
ORF1ab/nsp3	534	A534A	gcC	gcT	23	25	AY.100	0.001058
ORF1ab/nsp3	534	A534A	gcC	gcA	2	25	AY.100	0.000092
ORF1ab/nsp3	534	A534A	gcC	gcT	25	25	AY.110	0.002817
ORF1ab/nsp3	534	A534A	gcC	gcT	24	24	AY.33	0.001603
ORF1ab/nsp3	534	A534A	gcC	gcA	24	24	AY.4.1	0.017699
ORF1ab/nsp3	534	A534A	gcC	gcT	24	24	B.1.429	0.000565
ORF1ab/nsp3	534	A534A	gcC	gcT	23	23	AY.20	0.000894
ORF1ab/nsp3	534	A534A	gcC	gcT	23	23	AY.5	0.000475
ORF1ab/nsp3	534	A534V	gCc	gTc	23	23	AY.5.4	0.006364
ORF1ab/nsp3	534	A534V	gCc	gTc	23	23	B.1.36	0.003356
ORF1ab/nsp3	534	A534A	gcC	gcT	22	22	AY.111	0.004029
ORF1ab/nsp3	534	A534S	Gcc	Tcc	22	22	B.1.617.2	0.000083
ORF1ab/nsp3	534	A534T	Gcc	Acc	21	21	B.1.2	0.000185
ORF1ab/nsp3	534	A534V	gCc	gTc	20	20	AY.119	0.000706
ORF1ab/nsp3	534	A534V	gCc	gTc	20	20	AY.45	0.002434
ORF1ab/nsp3	534	A534V	gCc	gTc	20	20	AY.47	0.000622
ORF1ab/nsp3	534	A534V	gCc	gTc	20	20	C.37	0.002321
ORF1ab/nsp3	534	A534V	gCc	gTc	19	19	B.1.1.311	0.006805
ORF1ab/nsp3	534	A534A	gcC	gcT	18	18	AY.23	0.001255
ORF1ab/nsp3	534	A534V	gCc	gTc	18	18	B.1.177.4	0.003799
ORF1ab/nsp3	534	A534V	gCc	gTc	18	18	B.1.177.5	0.02236
ORF1ab/nsp3	534	A534V	gCc	gTc	18	18	B.1.311	0.004942
ORF1ab/nsp3	534	A534A	gcC	gcT	18	18	P.1.14	0.00086
ORF1ab/nsp3	534	A534A	gcC	gcT	17	17	AY.34	0.001648
ORF1ab/nsp3	534	A534A	gcC	gcT	17	17	AY.39.1	0.000673
ORF1ab/nsp3	534	A534V	gCc	gTc	17	17	AY.66	0.018182
ORF1ab/nsp3	534	A534V	gCc	gTc	17	17	AY.69	0.003173
ORF1ab/nsp3	534	A534del	GCC	---	17	17	B.1.1.7	0.000015
ORF1ab/nsp3	534	A534V	gCc	gTc	16	16	AY.23	0.001116
ORF1ab/nsp3	534	A534D	gCc	gAc	16	16	AY.3	0.000159
ORF1ab/nsp3	534	A534V	gCc	gTc	16	16	AY.9	0.001082
ORF1ab/nsp3	534	A534A	gcC	gcT	16	16	B.1.160	0.000499
ORF1ab/nsp3	534	A534V	gCc	gTc	15	15	AY.105	0.009646
ORF1ab/nsp3	534	A534V	gCc	gTc	15	15	AY.39.1	0.000594
ORF1ab/nsp3	534	A534V	gCc	gTc	15	15	AY.46.6	0.001083
ORF1ab/nsp3	534	A534T	Gcc	Acc	15	15	B.1.1.7	0.000013
ORF1ab/nsp3	534	A534S	Gcc	Tcc	14	14	AY.100	0.000644
ORF1ab/nsp3	534	A534V	gCc	gTc	14	14	AY.37	0.004425
ORF1ab/nsp3	534	A534A	gcC	gcT	14	14	AY.98	0.001106
ORF1ab/nsp3	534	A534A	gcC	gcT	14	14	AY.99.2	0.00129
ORF1ab/nsp3	534	A534A	gcC	gcT	14	14	B.1.258	0.000932
ORF1ab/nsp3	534	A534V	gCc	gTc	13	13	B.1.177.57	0.003653
ORF1ab/nsp3	534	A534V	gCc	gTc	13	13	B.1.243	0.000905
ORF1ab/nsp3	534	A534V	gCc	gTc	13	13	B.1.258	0.000865
ORF1ab/nsp3	534	A534V	gCc	gTc	13	13	Q.3	0.001885
ORF1ab/nsp3	534	A534H	GCc	CAc	12	12	All	0.000002
ORF1ab/nsp3	534	A534G	gCc	gGc	11	12	All	0.000002
ORF1ab/nsp3	534	A534G	gCC	gGG	1	12	All	0
ORF1ab/nsp3	534	A534A	gcC	gcA	11	12	AT.1	0.05641
ORF1ab/nsp3	534	A534A	gcC	gcT	1	12	AT.1	0.005128
ORF1ab/nsp3	534	A534V	gCc	gTc	12	12	AY.36	0.001779
ORF1ab/nsp3	534	A534V	gCc	gTc	12	12	AY.6	0.000494
ORF1ab/nsp3	534	A534V	gCc	gTc	12	12	AY.74	0.001388
ORF1ab/nsp3	534	A534V	gCc	gTc	12	12	AY.75.1	0.002164
ORF1ab/nsp3	534	A534V	gCc	gTc	12	12	AY.99.2	0.001106
ORF1ab/nsp3	534	A534T	Gcc	Acc	12	12	B.1.1	0.000218
ORF1ab/nsp3	534	A534V	gCc	gTc	12	12	B.1.240	0.002587
ORF1ab/nsp3	534	A534A	gcC	gcT	12	12	P.1.4	0.011719
ORF1ab/nsp3	534	A534V	gCc	gTc	11	11	A	0.004257
ORF1ab/nsp3	534	A534V	gCc	gTc	11	11	AY.109	0.008136
ORF1ab/nsp3	534	A534A	gcC	gcT	10	11	AY.117	0.000845
ORF1ab/nsp3	534	A534A	gcC	gcA	1	11	AY.117	0.000085
ORF1ab/nsp3	534	A534A	gcC	gcT	11	11	AY.29	0.000174
ORF1ab/nsp3	534	A534A	gcC	gcT	10	11	AY.46	0.001041
ORF1ab/nsp3	534	A534A	gcC	gcA	1	11	AY.46	0.000104
ORF1ab/nsp3	534	A534A	gcC	gcT	11	11	AY.98.1	0.000533
ORF1ab/nsp3	534	A534A	gcC	gcT	11	11	B.1.1.37	0.002122
ORF1ab/nsp3	534	A534V	gCc	gTc	11	11	B.1.234	0.001451
ORF1ab/nsp3	534	A534V	gCc	gTc	11	11	R.1	0.00099
ORF1ab/nsp3	534	A534V	gCc	gTc	10	10	AY.113	0.001424
ORF1ab/nsp3	534	A534A	gcC	gcT	10	10	AY.120	0.000372
ORF1ab/nsp3	534	A534V	gCc	gTc	10	10	AY.50	0.007994
ORF1ab/nsp3	534	A534A	gcC	gcT	10	10	B.1.1.269	0.013532
ORF1ab/nsp3	534	A534V	gCc	gTc	10	10	B.1.177.7	0.001649
ORF1ab/nsp3	534	A534V	gCc	gTc	10	10	B.1.258.17	0.00104
ORF1ab/nsp3	534	A534A	gcC	gcT	10	10	B.1.596	0.000871
ORF1ab/nsp3	534	A534V	gCc	gTc	10	10	B.1.621	0.000885
ORF1ab/nsp3	534	A534A	gcC	gcT	7	10	B.1.621	0.00062
ORF1ab/nsp3	534	A534A	gcC	gcG	2	10	B.1.621	0.000177
ORF1ab/nsp3	534	A534A	gcC	gcA	1	10	B.1.621	0.000089
ORF1ab/nsp3	534	A534V	gCc	gTc	10	10	B.1.628	0.003524
ORF1ab/nsp3	534	A534A	gcC	gcT	9	9	AY.42	0.000362
ORF1ab/nsp3	534	A534V	gCc	gTc	9	9	AY.46.4	0.001481
ORF1ab/nsp3	534	A534A	gcC	gcT	9	9	AY.84	0.003937
ORF1ab/nsp3	534	A534V	gCc	gTc	9	9	AY.90	0.00616
ORF1ab/nsp3	534	A534A	gcC	gcT	9	9	B.1.1.519	0.000357
ORF1ab/nsp3	534	A534S	Gcc	Tcc	9	9	B.1.177	0.000119
ORF1ab/nsp3	534	A534A	gcC	gcT	9	9	B.1.369	0.002567
ORF1ab/nsp3	534	A534V	gCc	gTc	9	9	B.1.596	0.000784
ORF1ab/nsp3	534	A534A	gcC	gcT	8	8	AY.105	0.005145
ORF1ab/nsp3	534	A534V	gCc	gTc	8	8	AY.111	0.001465
ORF1ab/nsp3	534	A534V	gCc	gTc	8	8	AY.114	0.001849
ORF1ab/nsp3	534	A534A	gcC	gcT	8	8	AY.116	0.002294
ORF1ab/nsp3	534	A534A	gcC	gcT	8	8	AY.121	0.001083
ORF1ab/nsp3	534	A534A	gcC	gcT	8	8	AY.47	0.000249
ORF1ab/nsp3	534	A534V	gCc	gTc	8	8	AY.75	0.000448
ORF1ab/nsp3	534	A534V	gCc	gTc	8	8	B.1.1.214	0.000444
ORF1ab/nsp3	534	A534V	gCc	gTc	8	8	B.1.1.28	0.00249
ORF1ab/nsp3	534	A534V	gCc	gTc	8	8	B.1.1.284	0.000859
ORF1ab/nsp3	534	A534V	gCc	gTc	8	8	B.1.1.356	0.068376
ORF1ab/nsp3	534	A534V	gCc	gTc	8	8	B.1.1.50	0.005431
ORF1ab/nsp3	534	A534V	gCc	gTc	8	8	B.1.221	0.000568
ORF1ab/nsp3	534	A534A	gcC	gcT	8	8	B.1.221	0.000568
ORF1ab/nsp3	534	A534A	gcC	gcT	8	8	B.1.427	0.000404
ORF1ab/nsp3	534	A534V	gCc	gTc	8	8	B.1.561	0.003176
ORF1ab/nsp3	534	A534V	gCc	gTc	8	8	B.1.617.1	0.001032
ORF1ab/nsp3	534	A534A	gcC	gcT	8	8	P.1.17	0.001294
ORF1ab/nsp3	534	A534V	gCc	gTc	7	7	AY.120.2.1	0.003488
ORF1ab/nsp3	534	A534T	Gcc	Acc	7	7	AY.25	0.000042
ORF1ab/nsp3	534	A534A	gcC	gcT	7	7	AY.4.2	0.000152
ORF1ab/nsp3	534	A534T	Gcc	Acc	7	7	AY.43	0.000031
ORF1ab/nsp3	534	A534V	gCc	gTc	7	7	AY.54	0.000667
ORF1ab/nsp3	534	A534V	gCc	gTc	7	7	AY.61	0.000733
ORF1ab/nsp3	534	A534A	gcC	gcT	6	7	AY.65	0.003198
ORF1ab/nsp3	534	A534A	gcC	gcA	1	7	AY.65	0.000533
ORF1ab/nsp3	534	A534A	gcC	gcT	7	7	AY.85	0.00299
ORF1ab/nsp3	534	A534A	gcC	gcT	7	7	AY.92	0.002011
ORF1ab/nsp3	534	A534V	gCc	gTc	7	7	B.1.1.33	0.002946
ORF1ab/nsp3	534	A534P	Gcc	Ccc	7	7	B.1.1.7	0.000006
ORF1ab/nsp3	534	A534A	gcC	gcT	6	6	A.2.5	0.002994
ORF1ab/nsp3	534	A534V	gCc	gTc	6	6	AY.27	0.000388
ORF1ab/nsp3	534	A534T	Gcc	Acc	6	6	AY.3	0.00006
ORF1ab/nsp3	534	A534del	GCC	---	6	6	AY.4	0.000009
ORF1ab/nsp3	534	A534A	gcC	gcT	6	6	AY.45	0.00073
ORF1ab/nsp3	534	A534A	gcC	gcT	6	6	AY.9	0.000406
ORF1ab/nsp3	534	A534V	gCc	gTc	6	6	B	0.000767
ORF1ab/nsp3	534	A534V	gCc	gTc	6	6	B.1.1.1	0.00196
ORF1ab/nsp3	534	A534V	gCc	gTc	6	6	B.1.1.216	0.005343
ORF1ab/nsp3	534	A534V	gCc	gTc	6	6	B.1.1.273	0.040541
ORF1ab/nsp3	534	A534A	gcC	gcT	6	6	B.1.1.306	0.00263
ORF1ab/nsp3	534	A534V	gCc	gTc	6	6	B.1.1.368	0.018519
ORF1ab/nsp3	534	A534A	gcC	gcT	6	6	B.1.160.11	0.034286
ORF1ab/nsp3	534	A534V	gCc	gTc	6	6	B.1.177.74	0.090909
ORF1ab/nsp3	534	A534A	gcC	gcT	6	6	B.1.177.80	0.011472
ORF1ab/nsp3	534	A534V	gCc	gTc	6	6	B.1.265	0.007624
ORF1ab/nsp3	534	A534A	gcC	gcT	6	6	B.1.420	0.0625
ORF1ab/nsp3	534	A534V	gCc	gTc	6	6	B.1.428	0.006122
ORF1ab/nsp3	534	A534A	gcC	gcT	6	6	B.1.627	0.012121
ORF1ab/nsp3	534	A534V	gCc	gTc	6	6	C.36.3	0.003403
ORF1ab/nsp3	534	A534A	gcC	gcT	6	6	C.36.3	0.003403
ORF1ab/nsp3	534	A534C	GCc	TGc	5	5	All	0.000001
ORF1ab/nsp3	534	A534del1	Gcc	-cc	3	5	All	0.000001
ORF1ab/nsp3	534	A534del1	gCc	g-c	2	5	All	0
ORF1ab/nsp3	534	A534V	gCc	gTc	5	5	AY.107	0.00233
ORF1ab/nsp3	534	A534V	gCC	gTT	3	5	AY.118	0.000188
ORF1ab/nsp3	534	A534V	gCc	gTc	2	5	AY.118	0.000125
ORF1ab/nsp3	534	A534A	gcC	gcT	5	5	AY.12	0.00158
ORF1ab/nsp3	534	A534V	gCc	gTc	5	5	AY.16	0.001898
ORF1ab/nsp3	534	A534S	Gcc	Tcc	5	5	AY.26	0.000142
ORF1ab/nsp3	534	A534V	gCc	gTc	5	5	AY.49	0.015974
ORF1ab/nsp3	534	A534A	gcC	gcT	5	5	AY.64	0.002976
ORF1ab/nsp3	534	A534A	gcC	gcT	5	5	AY.71	0.002375
ORF1ab/nsp3	534	A534V	gCc	gTc	5	5	AY.98	0.000395
ORF1ab/nsp3	534	A534V	gCc	gTc	5	5	AZ.3	0.007599
ORF1ab/nsp3	534	A534A	gcC	gcT	4	5	B	0.000511
ORF1ab/nsp3	534	A534A	gcC	gcA	1	5	B	0.000128
ORF1ab/nsp3	534	A534V	gCc	gTc	5	5	B.1.1.294	0.006329
ORF1ab/nsp3	534	A534A	gcC	gcT	5	5	B.1.177.35	0.003455
ORF1ab/nsp3	534	A534V	gCc	gTc	5	5	B.1.177.60	0.001092
ORF1ab/nsp3	534	A534A	gcC	gcT	5	5	B.1.391	0.005637
ORF1ab/nsp3	534	A534A	gcC	gcT	5	5	B.1.400	0.002145
ORF1ab/nsp3	534	A534A	gcC	gcT	4	5	B.1.466.2	0.001565
ORF1ab/nsp3	534	A534A	gcC	gcA	1	5	B.1.466.2	0.000391
ORF1ab/nsp3	534	A534A	gcC	gcT	5	5	B.1.561	0.001985
ORF1ab/nsp3	534	A534V	gCc	gTc	5	5	B.1.575	0.001517
ORF1ab/nsp3	534	A534P	Gcc	Ccc	4	4	A.2.4	0.013468
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	AY.116	0.001147
ORF1ab/nsp3	534	A534S	Gcc	Tcc	4	4	AY.119	0.000141
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	AY.13	0.000644
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	AY.14	0.000352
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	AY.3.1	0.000341
ORF1ab/nsp3	534	A534A	gcC	gcT	4	4	AY.3.1	0.000341
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	AY.35	0.000932
ORF1ab/nsp3	534	A534A	gcC	gcT	4	4	AY.54	0.000381
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	AY.59	0.002119
ORF1ab/nsp3	534	A534A	gcC	gcT	4	4	AY.6	0.000165
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	AY.71	0.0019
ORF1ab/nsp3	534	A534A	gcC	gcT	4	4	AY.75	0.000224
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	AY.92	0.001149
ORF1ab/nsp3	534	A534P	Gcc	Ccc	4	4	B.1	0.000037
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	B.1.1.176	0.001757
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	B.1.1.222	0.000816
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	B.1.1.25	0.002274
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	B.1.1.306	0.001754
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	B.1.1.5	0.033333
ORF1ab/nsp3	534	A534T	Gcc	Acc	4	4	B.1.1.519	0.000159
ORF1ab/nsp3	534	A534D	gCc	gAc	4	4	B.1.1.7	0.000004
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	B.1.1.72	0.121212
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	B.1.165	0.047619
ORF1ab/nsp3	534	A534T	Gcc	Acc	4	4	B.1.177	0.000053
ORF1ab/nsp3	534	A534A	gcC	gcT	2	4	B.1.177.21	0.000153
ORF1ab/nsp3	534	A534A	gcC	gcA	2	4	B.1.177.21	0.000153
ORF1ab/nsp3	534	A534S	Gcc	Tcc	4	4	B.1.2	0.000035
ORF1ab/nsp3	534	A534D	gCc	gAc	4	4	B.1.258	0.000266
ORF1ab/nsp3	534	A534A	gcC	gcT	4	4	B.1.311	0.001098
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	B.1.36.19	0.037037
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	B.1.36.22	0.004831
ORF1ab/nsp3	534	A534A	gcC	gcT	3	4	B.1.36.29	0.001552
ORF1ab/nsp3	534	A534A	gcC	gcA	1	4	B.1.36.29	0.000517
ORF1ab/nsp3	534	A534A	gcC	gcT	4	4	B.1.523	0.009804
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	B.1.525	0.000453
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	B.1.612	0.01061
ORF1ab/nsp3	534	A534A	gcC	gcT	4	4	B.1.619	0.003484
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	B.40	0.001457
ORF1ab/nsp3	534	A534A	gcC	gcT	4	4	C.26	0.029412
ORF1ab/nsp3	534	A534P	Gcc	Ccc	4	4	D.2	0.0003
ORF1ab/nsp3	534	A534A	gcC	gcT	4	4	D.2	0.0003
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	P.1.2	0.004624
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	P.2	0.000747
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	Q.1	0.000505
ORF1ab/nsp3	534	A534V	gCc	gTc	4	4	Q.8	0.00066
ORF1ab/nsp3	534	A534G	gCc	gGc	2	3		0.111111
ORF1ab/nsp3	534	A534S	Gcc	Tcc	2	3		0.111111
ORF1ab/nsp3	534	A534A	gcC	gcA	2	3		0.111111
ORF1ab/nsp3	534	A534A	gcC	gcG	1	3		0.055556
ORF1ab/nsp3	534	A534G	gCC	gGG	1	3		0.055556
ORF1ab/nsp3	534	A534S	GCc	AGc	1	3		0.055556
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	A.1	0.000846
ORF1ab/nsp3	534	A534D	gCc	gAc	3	3	A.2.4	0.010101
ORF1ab/nsp3	534	A534H	GCc	CAc	3	3	A.2.4	0.010101
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	A.27	0.004967
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	AD.2	0.000657
ORF1ab/nsp3	534	A534A	gcC	gcT	2	3	AD.2	0.000438
ORF1ab/nsp3	534	A534A	gcC	gcA	1	3	AD.2	0.000219
ORF1ab/nsp3	534	A534D	gCc	gAc	3	3	AY.103	0.000019
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	AY.104	0.005952
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	AY.104	0.005952
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	AY.106	0.001005
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	AY.109	0.002219
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	AY.110	0.000338
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	AY.113	0.000427
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	AY.116.1	0.000934
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	AY.117	0.000254
ORF1ab/nsp3	534	A534T	Gcc	Acc	3	3	AY.120	0.000112
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	AY.120.1	0.000963
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	AY.16.1	0.00141
ORF1ab/nsp3	534	A534P	Gcc	Ccc	3	3	AY.25	0.000018
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	AY.32	0.001597
ORF1ab/nsp3	534	A534D	gCc	gAc	3	3	AY.4	0.000005
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	AY.4.5	0.000322
ORF1ab/nsp3	534	A534del	GCC	---	3	3	AY.4.5	0.000322
ORF1ab/nsp3	534	A534S	Gcc	Tcc	3	3	AY.44	0.000018
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	AY.5.3	0.001012
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	AY.68	0.000821
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	AY.70	0.000626
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	AY.70	0.000626
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	AY.77	0.003382
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	AY.85	0.001282
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	AY.87	0.002498
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	AY.93	0.000819
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	AY.94	0.001328
ORF1ab/nsp3	534	A534S	Gcc	Tcc	3	3	B.1	0.000027
ORF1ab/nsp3	534	A534S	Gcc	Tcc	3	3	B.1.1	0.000054
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	B.1.1.269	0.00406
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	B.1.1.277	0.002276
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	B.1.1.317	0.001235
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	B.1.1.37	0.000579
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	B.1.1.39	0.001529
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	B.1.1.420	0.003018
ORF1ab/nsp3	534	A534G	gCc	gGc	3	3	B.1.1.7	0.000003
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	B.1.160.16	0.002788
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	B.1.160.22	0.02027
ORF1ab/nsp3	534	A534del	GCC	---	3	3	B.1.177	0.00004
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	B.1.177.60	0.000655
ORF1ab/nsp3	534	A534P	Gcc	Ccc	3	3	B.1.232	0.001612
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	B.1.351.3	0.002629
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	B.1.36.1	0.003421
ORF1ab/nsp3	534	A534G	gCc	gGc	3	3	B.1.429	0.000071
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	B.1.459	0.012245
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	B.1.469	0.01083
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	B.1.499	0.003151
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	B.1.524	0.004219
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	B.1.575	0.00091
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	B.1.6	0.051724
ORF1ab/nsp3	534	A534A	gcC	gcT	3	3	B.1.609	0.001438
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	B.6	0.00273
ORF1ab/nsp3	534	A534T	Gcc	Acc	3	3	C.35	0.002322
ORF1ab/nsp3	534	A534T	Gcc	Acc	3	3	P.1	0.000047
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	P.1.12	0.001452
ORF1ab/nsp3	534	A534A	gcC	gcT	2	3	P.1.12	0.000968
ORF1ab/nsp3	534	A534A	gcC	gcA	1	3	P.1.12	0.000484
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	P.1.15	0.000697
ORF1ab/nsp3	534	A534V	gCc	gTc	3	3	P.1.7	0.000958
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	A.2.5.1	0.009615
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	A.21	0.00554
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	AY.1	0.000791
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.10	0.00106
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	AY.101	0.000981
ORF1ab/nsp3	534	A534T	Gcc	Acc	2	2	AY.102	0.000053
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.108	0.002205
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	AY.114	0.000462
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.12	0.000632
ORF1ab/nsp3	534	A534S	Gcc	Tcc	2	2	AY.12	0.000632
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.2	0.000712
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	AY.24	0.000862
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.30	0.000791
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	AY.32	0.001065
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.34.1	0.00102
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	AY.35	0.000466
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	AY.36	0.000296
ORF1ab/nsp3	534	A534P	Gcc	Ccc	2	2	AY.4	0.000003
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.4.1	0.001475
ORF1ab/nsp3	534	A534T	Gcc	Acc	2	2	AY.4.2	0.000043
ORF1ab/nsp3	534	A534C	GCc	TGc	2	2	AY.44	0.000012
ORF1ab/nsp3	534	A534P	Gcc	Ccc	2	2	AY.44	0.000012
ORF1ab/nsp3	534	A534T	Gcc	Acc	2	2	AY.45	0.000243
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.46.2	0.001271
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	AY.46.4	0.000329
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.46.5	0.000397
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.48	0.00093
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.5.3	0.000675
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	AY.55	0.001835
ORF1ab/nsp3	534	A534D	gCc	gAc	2	2	AY.6	0.000082
ORF1ab/nsp3	534	A534T	Gcc	Acc	2	2	AY.61	0.00021
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.62	0.000871
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.7	0.000392
ORF1ab/nsp3	534	A534T	Gcc	Acc	2	2	AY.7.1	0.000225
ORF1ab/nsp3	534	A534T	Gcc	Acc	2	2	AY.73	0.001331
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	AY.73	0.001331
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.86	0.00166
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.89	0.009804
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	AY.93	0.000546
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	AY.95	0.001522
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	AZ.2	0.001642
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.1.157	0.001826
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.1.174	0.006757
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.1.216	0.001781
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.1.220	0.003717
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.1.25	0.001137
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.1.298	0.001724
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.1.298	0.001724
ORF1ab/nsp3	534	A534P	Gcc	Ccc	2	2	B.1.1.298	0.001724
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.1.317	0.000823
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.1.318	0.000604
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.1.348	0.001592
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.1.370	0.025316
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.1.398	0.006452
ORF1ab/nsp3	534	A534A	gcC	gcA	1	2	B.1.1.409	0.002833
ORF1ab/nsp3	534	A534A	gcC	gcT	1	2	B.1.1.409	0.002833
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.1.411	0.029412
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.1.432	0.002532
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.1.434	0.000697
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.1.44	0.004819
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.1.50	0.001358
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.1.70	0.000682
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.110.3	0.001437
ORF1ab/nsp3	534	A534T	Gcc	Acc	2	2	B.1.160	0.000062
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.177.19	0.002861
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.177.44	0.001038
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.177.58	0.002663
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.177.62	0.002384
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.177.7	0.00033
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.177.73	0.001133
ORF1ab/nsp3	534	A534D	gCc	gAc	2	2	B.1.2	0.000018
ORF1ab/nsp3	534	A534del	GCC	---	2	2	B.1.2	0.000018
ORF1ab/nsp3	534	A534G	gCc	gGc	2	2	B.1.221	0.000142
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.239	0.002442
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.314	0.015038
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.342	0.2
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.346	0.002621
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.36.1	0.002281
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.36.18	0.00084
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.36.29	0.001035
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.36.7	0.008
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.369	0.00057
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.39	0.007812
ORF1ab/nsp3	534	A534S	Gcc	Tcc	2	2	B.1.429	0.000047
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.478	0.023529
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.493	0.051282
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.497	0.00063
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.499	0.002101
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.538	0.016129
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.551	0.002581
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.577	0.001375
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.582	0.000981
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.595	0.000522
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	B.1.617.1	0.000258
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.623	0.001073
ORF1ab/nsp3	534	A534del1	Gcc	-cc	2	2	B.1.627	0.00404
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.8	0.003945
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	B.1.9	0.012346
ORF1ab/nsp3	534	A534D	gCc	gAc	2	2	B.6	0.00182
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	L.3	0.007092
ORF1ab/nsp3	534	A534S	Gcc	Tcc	2	2	P.1	0.000032
ORF1ab/nsp3	534	A534A	gcC	gcA	1	2	P.1.1	0.000318
ORF1ab/nsp3	534	A534A	gcC	gcT	1	2	P.1.1	0.000318
ORF1ab/nsp3	534	A534V	gCc	gTc	2	2	P.1.10	0.000539
ORF1ab/nsp3	534	A534A	gcC	gcT	2	2	P.1.2	0.002312
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1		0.055556
ORF1ab/nsp3	534	A534C	GCc	TGc	1	1		0.055556
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1		0.055556
ORF1ab/nsp3	534	A534Y	GCc	TAc	1	1		0.055556
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	A.1	0.000282
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	A.18	0.05
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	A.2.5.2	0.001572
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	A.21	0.00277
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	A.28	0.002646
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	A.3	0.002096
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	A.5	0.001923
ORF1ab/nsp3	534	A534F	GCc	TTc	1	1	All	0
ORF1ab/nsp3	534	A534I	GCc	ATc	1	1	All	0
ORF1ab/nsp3	534	A534K	GCC	AAA	1	1	All	0
ORF1ab/nsp3	534	A534Y	GCc	TAc	1	1	All	0
ORF1ab/nsp3	534	A534E	gCC	gAA	1	1	All	0
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AS.2	0.015625
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	AV.1	0.005051
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AW.1	0.003049
ORF1ab/nsp3	534	A534H	GCc	CAc	1	1	AY.100	0.000046
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.101	0.00049
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	AY.102	0.000027
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	AY.102	0.000027
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.103	0.000006
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.105	0.000643
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.11	0.001339
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.117	0.000085
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	AY.118	0.000063
ORF1ab/nsp3	534	A534T	GcC	AcT	1	1	AY.118	0.000063
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.120.1	0.000321
ORF1ab/nsp3	534	A534del	GCC	---	1	1	AY.120.1	0.000321
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.120.1	0.000321
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.15	0.002222
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.16	0.00038
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.16.1	0.00047
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.21	0.001898
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.23.1	0.000417
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.24	0.000431
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	AY.25	0.000006
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.27	0.000065
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.28	0.00189
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	AY.29	0.000016
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.29.1	0.000221
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	AY.3	0.00001
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.30	0.000396
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	AY.34	0.000097
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.38	0.000499
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.39	0.000025
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	AY.4	0.000002
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.4.3	0.000842
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.4.4	0.000409
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.40	0.000964
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.40	0.000964
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.42	0.00004
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	AY.42	0.00004
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	AY.43	0.000004
ORF1ab/nsp3	534	A534C	GCc	TGc	1	1	AY.43	0.000004
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.44	0.000006
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	AY.44	0.000006
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.46.1	0.001027
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.46.1	0.001027
ORF1ab/nsp3	534	A534del	GCC	---	1	1	AY.46.2	0.000635
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.46.2	0.000635
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.46.3	0.000934
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.46.6	0.000072
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.5	0.000021
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.5.1	0.003759
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.5.4	0.000277
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.51	0.000909
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.52	0.000814
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.53	0.000288
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.55	0.000917
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.58	0.000907
ORF1ab/nsp3	534	A534A	gcC	gcA	1	1	AY.61	0.000105
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.62	0.000436
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.63	0.000387
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.67	0.000464
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.68	0.000274
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.7.1	0.000113
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.73	0.000665
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	AY.74	0.000116
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.75	0.000056
ORF1ab/nsp3	534	A534A	gcC	gcA	1	1	AY.75.1	0.00018
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.76	0.004831
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	AY.78	0.001541
ORF1ab/nsp3	534	A534C	GCc	TGc	1	1	AY.79	0.001211
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.84	0.000437
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	AY.91	0.00073
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	AY.94	0.000443
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	AY.99	0.001049
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	B.1	0.000009
ORF1ab/nsp3	534	A534I	GCc	ATc	1	1	B.1	0.000009
ORF1ab/nsp3	534	A534H	GCc	CAc	1	1	B.1	0.000009
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.1	0.000018
ORF1ab/nsp3	534	A534K	GCC	AAA	1	1	B.1.1	0.000018
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	B.1.1	0.000018
ORF1ab/nsp3	534	A534del1	Gcc	-cc	1	1	B.1.1	0.000018
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.153	0.001095
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.161	0.003534
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.161	0.003534
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.170	0.001247
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.176	0.000439
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.1.186	0.003436
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.186	0.003436
ORF1ab/nsp3	534	A534A	gcC	gcA	1	1	B.1.1.192	0.002309
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.205	0.003717
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	B.1.1.253	0.002506
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.258	0.003257
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.263	0.001558
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.263	0.001558
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.265	0.003155
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.27	0.00565
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.274	0.005051
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.279	0.001121
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.284	0.000107
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	B.1.1.285	0.006536
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.286	0.002899
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.291	0.000742
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.302	0.002075
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.307	0.002532
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.312	0.001912
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.315	0.008475
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.1.318	0.000302
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.320	0.018182
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.329	0.003846
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	B.1.1.335	0.012987
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.354	0.004386
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.354	0.004386
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.362	0.005618
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.1.368	0.003086
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	B.1.1.368	0.003086
ORF1ab/nsp3	534	A534H	GCc	CAc	1	1	B.1.1.368	0.003086
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.369	0.000446
ORF1ab/nsp3	534	A534A	gcC	gcA	1	1	B.1.1.370	0.012658
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.371	0.010417
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.373	0.02381
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.389	0.006061
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.397	0.002252
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.397	0.002252
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.416	0.000905
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.420	0.001006
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.450	0.034483
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.512	0.028571
ORF1ab/nsp3	534	A534del	GCC	---	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.528	0.004808
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.57	0.011494
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.1.63	0.000386
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.74	0.00431
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.1.89	0.006061
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	B.1.104	0.00369
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.110.3	0.000718
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.111	0.001175
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.126	0.001276
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.131	0.008772
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.146	0.004237
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.149	0.003425
ORF1ab/nsp3	534	A534del	GCC	---	1	1	B.1.160	0.000031
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.160.8	0.001289
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.170	0.00431
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.177	0.000013
ORF1ab/nsp3	534	A534E	gCC	gAA	1	1	B.1.177	0.000013
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	B.1.177	0.000013
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.177.10	0.000878
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.177.16	0.000664
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.177.17	0.000821
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.177.23	0.003236
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.177.41	0.0025
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.177.44	0.000519
ORF1ab/nsp3	534	A534H	GCc	CAc	1	1	B.1.177.45	0.000381
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.177.50	0.004695
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.177.56	0.000668
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.177.57	0.000281
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.177.65	0.000665
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.177.73	0.000566
ORF1ab/nsp3	534	A534G	gCc	gGc	1	1	B.1.177.81	0.000189
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.177.81	0.000189
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.177.85	0.005435
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.177.86	0.000183
ORF1ab/nsp3	534	A534del	GCC	---	1	1	B.1.177.9	0.001332
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.189	0.004292
ORF1ab/nsp3	534	A534del1	gCc	g-c	1	1	B.1.2	0.000009
ORF1ab/nsp3	534	A534H	GCc	CAc	1	1	B.1.2	0.000009
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.214.1	0.02
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	B.1.221	0.000071
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	B.1.232	0.000537
ORF1ab/nsp3	534	A534H	GCc	CAc	1	1	B.1.232	0.000537
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.236	0.002053
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.240	0.000216
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	B.1.243	0.00007
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.258.14	0.00098
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.258.17	0.000104
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.265	0.001271
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.270	0.005618
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.315	0.006061
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.324	0.001605
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.333	0.010526
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.340	0.004292
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.340	0.004292
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.346	0.001311
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	B.1.351	0.00003
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.351.2	0.000303
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.351.5	0.0006
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	B.1.351.5	0.0006
ORF1ab/nsp3	534	A534del	GCC	---	1	1	B.1.36	0.000146
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.36.17	0.000494
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.36.17	0.000494
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.36.18	0.00042
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.36.36	0.000602
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.36.38	0.001642
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.36.39	0.002217
ORF1ab/nsp3	534	A534del1	gCc	g-c	1	1	B.1.36.8	0.001
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.367	0.000792
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.371	0.001122
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.398	0.002976
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.400	0.000429
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.404	0.001302
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.406	0.006061
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.411	0.003704
ORF1ab/nsp3	534	A534del	GCC	---	1	1	B.1.415	0.014286
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	B.1.416	0.001269
ORF1ab/nsp3	534	A534H	GCc	CAc	1	1	B.1.416	0.001269
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.416	0.001269
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.420	0.010417
ORF1ab/nsp3	534	A534H	GCc	CAc	1	1	B.1.427	0.00005
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.427	0.00005
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	B.1.427	0.00005
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	B.1.429	0.000024
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.429	0.000024
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.433	0.003195
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.436	0.001029
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.453	0.003236
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.459	0.004082
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.463	0.008065
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.465	0.003802
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	B.1.466.2	0.000391
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.466.2	0.000391
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.470	0.001404
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.471	0.002732
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.493	0.025641
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.495	0.009091
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.503	0.002488
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.509	0.000866
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.517	0.000427
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	B.1.525	0.000113
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	B.1.526	0.000024
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.556	0.007519
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.560	0.00463
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.568	0.001111
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.570	0.002941
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.574	0.002151
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	B.1.575	0.000303
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.575.1	0.002439
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.579	0.011236
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	B.1.580	0.004065
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.582	0.000491
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.588	0.00091
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.595	0.000261
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	B.1.596	0.000087
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.596	0.000087
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.599	0.00365
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.603	0.010638
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	B.1.609	0.000479
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.609	0.000479
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	B.1.609	0.000479
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.610	0.003546
ORF1ab/nsp3	534	A534F	GCc	TTc	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	534	A534del	GCC	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.619	0.000871
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	B.1.621	0.000089
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.621.1	0.000506
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.1.623	0.000536
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.625	0.002353
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.627	0.00202
ORF1ab/nsp3	534	A534A	gcC	gcG	1	1	B.1.636	0.006711
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	B.1.637	0.000073
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	B.1.78	0.008547
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.23	0.002924
ORF1ab/nsp3	534	A534del	GCC	---	1	1	B.57	0.015152
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	B.6	0.00091
ORF1ab/nsp3	534	A534A	gcC	gcA	1	1	B.6.6	0.000889
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	C.14	0.004329
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	C.16	0.00106
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	C.36	0.000911
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	C.36.1	0.004149
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	C.37	0.000116
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	D.2	0.000075
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	D.2	0.000075
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	D.2	0.000075
ORF1ab/nsp3	534	A534H	GCc	CAc	1	1	D.2	0.000075
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	L.1	0.001905
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	N.1	0.016949
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	N.4	0.004255
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	N.5	0.001767
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	P.1.10	0.000269
ORF1ab/nsp3	534	A534P	Gcc	Ccc	1	1	P.1.14	0.000048
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	P.1.16	0.000374
ORF1ab/nsp3	534	A534T	Gcc	Acc	1	1	P.1.17	0.000162
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	P.1.6	0.001946
ORF1ab/nsp3	534	A534D	gCc	gAc	1	1	P.1.7	0.000319
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	P.2	0.000187
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	Q.1	0.000126
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	Q.8	0.000165
ORF1ab/nsp3	534	A534S	Gcc	Tcc	1	1	Q.8	0.000165
ORF1ab/nsp3	534	A534del	GCC	---	1	1	U.3	0.003861
ORF1ab/nsp3	534	A534A	gcC	gcT	1	1	U.3	0.003861
ORF1ab/nsp3	534	A534V	gCc	gTc	1	1	W.2	0.004831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.