CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 530

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3530K530NK1348NnonsynaaGaaT5495470.9963574307-4309
ORF1ab/nsp3530K530NK1348NnonsynaaGaaC54920.003642994307-4309
ORF1ab/nsp3530K530KK1348KsynaaGaaA15715714307-4309
ORF1ab/nsp3530K530RK1348RnonsynaAgaGg14614614307-4309
ORF1ab/nsp3530K530QK1348QnonsynAagCag12612614307-4309
ORF1ab/nsp3530K530delK1348deldelAAG---464614307-4309
ORF1ab/nsp3530K530EK1348EnonsynAagGag42400.9523814307-4309
ORF1ab/nsp3530K530EK1348EnonsynAaGGaA4220.0476194307-4309
ORF1ab/nsp3530K530TK1348TnonsynaAgaCg26220.8461544307-4309
ORF1ab/nsp3530K530TK1348TnonsynaAGaCT2620.07692314307-4309
ORF1ab/nsp3530K530TK1348TnonsynaAGaCC2620.07692314307-4309
ORF1ab/nsp3530K530MK1348MnonsynaAgaTg5514307-4309
ORF1ab/nsp3530K530GK1348GnonsynAAGGGT420.54307-4309
ORF1ab/nsp3530K530SK1348SnonsynaAGaGC420.54307-4309
ORF1ab/nsp3530K530SK1348SnonsynaAGaGT420.54307-4309
ORF1ab/nsp3530K530AK1348AnonsynAAGGCC420.54307-4309
ORF1ab/nsp3530K530AK1348AnonsynAAGGCT420.54307-4309
ORF1ab/nsp3530K530GK1348GnonsynAAGGGC420.54307-4309
ORF1ab/nsp3530K530XK1348XnonsynAagTag320.6666674307-4309
ORF1ab/nsp3530K530XK1348XnonsynAaGTaA310.3333334307-4309
ORF1ab/nsp3530K530del2K1348del2delAAg--g1114307-4309
ORF1ab/nsp3530K530VK1348VnonsynAAgGTg1114307-4309
ORF1ab/nsp3530K530CK1348CnonsynAAGTGC1114307-4309
ORF1ab/nsp3530K530del1K1348del1delaaGaa-1114307-4309

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3530K530NaaGaaT547549All0.000105
ORF1ab/nsp3530K530NaaGaaC2549All0
ORF1ab/nsp3530K530KaaGaaA157157All0.00003
ORF1ab/nsp3530K530RaAgaGg146146All0.000028
ORF1ab/nsp3530K530QAagCag126126All0.000024
ORF1ab/nsp3530K530NaaGaaT116116AY.40.000181
ORF1ab/nsp3530K530QAagCag113113C.380.91129
ORF1ab/nsp3530K530NaaGaaT102102B.1.1.2140.005657
ORF1ab/nsp3530K530NaaGaaT6767B.1.1.70.00006
ORF1ab/nsp3530K530KaaGaaA6161B.1.1.70.000055
ORF1ab/nsp3530K530NaaGaaT5454B.1.20.000475
ORF1ab/nsp3530K530delAAG---4646All0.000009
ORF1ab/nsp3530K530EAagGag4042All0.000008
ORF1ab/nsp3530K530EAaGGaA242All0
ORF1ab/nsp3530K530NaaGaaT3838AY.470.001182
ORF1ab/nsp3530K530NaaGaaT3232AY.730.021291
ORF1ab/nsp3530K530NaaGaaT2929B.1.617.20.000109
ORF1ab/nsp3530K530TaAgaCg2226All0.000004
ORF1ab/nsp3530K530TaAGaCC226All0
ORF1ab/nsp3530K530TaAGaCT226All0
ORF1ab/nsp3530K530RaAgaGg2424B.1.617.20.00009
ORF1ab/nsp3530K530EAagGag2223B.1.1.70.00002
ORF1ab/nsp3530K530EAaGGaA123B.1.1.70.000001
ORF1ab/nsp3530K530RaAgaGg1919B.1.1.70.000017
ORF1ab/nsp3530K530delAAG---1717B.1.1.70.000015
ORF1ab/nsp3530K530KaaGaaA1111AY.1210.001488
ORF1ab/nsp3530K530KaaGaaA1111AY.370.003477
ORF1ab/nsp3530K530RaAgaGg1111AY.430.000049
ORF1ab/nsp3530K530KaaGaaA1111AY.50.000227
ORF1ab/nsp3530K530RaAgaGg1111B.1.20.000097
ORF1ab/nsp3530K530NaaGaaT1010AY.430.000044
ORF1ab/nsp3530K530KaaGaaA99AY.40.000014
ORF1ab/nsp3530K530RaAgaGg99B.10.000082
ORF1ab/nsp3530K530NaaGaaT99B.1.1.3850.040179
ORF1ab/nsp3530K530NaaGaaT99B.1.5510.011613
ORF1ab/nsp3530K530NaaGaaT88AY.30.00008
ORF1ab/nsp3530K530KaaGaaA77AY.1130.000997
ORF1ab/nsp3530K530NaaGaaT77AY.280.013233
ORF1ab/nsp3530K530RaAgaGg77B.1.177.100.006146
ORF1ab/nsp3530K530TaAgaCg66AY.200.000233
ORF1ab/nsp3530K530delAAG---66AY.40.000009
ORF1ab/nsp3530K530NaaGaaT66AY.440.000037
ORF1ab/nsp3530K530NaaGaaT66B.1.10.000109
ORF1ab/nsp3530K530NaaGaaT66B.1.1770.000079
ORF1ab/nsp3530K530KaaGaaA66B.1.20.000053
ORF1ab/nsp3530K530MaAgaTg55All0.000001
ORF1ab/nsp3530K530RaAgaGg55AY.620.002179
ORF1ab/nsp3530K530delAAG---55B0.000639
ORF1ab/nsp3530K530TaAgaCg55B.1.1.70.000004
ORF1ab/nsp3530K530RaAgaGg55B.1.4290.000118
ORF1ab/nsp3530K530RaAgaGg55P.10.000079
ORF1ab/nsp3530K530SaAGaGC24All0
ORF1ab/nsp3530K530SaAGaGT24All0
ORF1ab/nsp3530K530AAAGGCT24All0
ORF1ab/nsp3530K530AAAGGCC24All0
ORF1ab/nsp3530K530GAAGGGC24All0
ORF1ab/nsp3530K530GAAGGGT24All0
ORF1ab/nsp3530K530NaaGaaT44AY.1080.00441
ORF1ab/nsp3530K530RaAgaGg44B.1.1.4160.00362
ORF1ab/nsp3530K530RaAgaGg44B.1.1770.000053
ORF1ab/nsp3530K530KaaGaaA44B.1.4270.000202
ORF1ab/nsp3530K530NaaGaaT44Q.70.004444
ORF1ab/nsp3530K530XAagTag23All0
ORF1ab/nsp3530K530XAaGTaA13All0
ORF1ab/nsp3530K530KaaGaaA33AY.1190.000106
ORF1ab/nsp3530K530KaaGaaA33AY.250.000018
ORF1ab/nsp3530K530TaAgaCg33AY.40.000005
ORF1ab/nsp3530K530delAAG---33AY.4.50.000322
ORF1ab/nsp3530K530TaAgaCg33AY.420.000121
ORF1ab/nsp3530K530RaAgaGg33AY.500.002398
ORF1ab/nsp3530K530NaaGaaC23AY.540.000191
ORF1ab/nsp3530K530NaaGaaT13AY.540.000095
ORF1ab/nsp3530K530EAagGag33B.1.1.4860.004732
ORF1ab/nsp3530K530RaAgaGg33B.1.1.5190.000119
ORF1ab/nsp3530K530MaAgaTg33B.1.1.70.000003
ORF1ab/nsp3530K530delAAG---33B.1.1770.00004
ORF1ab/nsp3530K530EAagGag33B.1.30.007853
ORF1ab/nsp3530K530NaaGaaT33B.1.3510.000089
ORF1ab/nsp3530K530KaaGaaA33B.1.617.20.000011
ORF1ab/nsp3530K530delAAG---33B.1.617.20.000011
ORF1ab/nsp3530K530NaaGaaT33P.10.000047
ORF1ab/nsp3530K530RaAgaGg22AY.1020.000053
ORF1ab/nsp3530K530NaaGaaT22AY.1020.000053
ORF1ab/nsp3530K530KaaGaaA22AY.120.10.000642
ORF1ab/nsp3530K530KaaGaaA22AY.200.000078
ORF1ab/nsp3530K530RaAgaGg22AY.250.000012
ORF1ab/nsp3530K530NaaGaaT22AY.260.000057
ORF1ab/nsp3530K530KaaGaaA22AY.290.000032
ORF1ab/nsp3530K530KaaGaaA22AY.30.00002
ORF1ab/nsp3530K530AAAGGCC12AY.30.00001
ORF1ab/nsp3530K530SaAGaGC12AY.30.00001
ORF1ab/nsp3530K530TaAGaCT12AY.30.00001
ORF1ab/nsp3530K530TaAGaCC12AY.30.00001
ORF1ab/nsp3530K530GAAGGGC12AY.30.00001
ORF1ab/nsp3530K530GAAGGGT12AY.30.00001
ORF1ab/nsp3530K530SaAGaGT12AY.30.00001
ORF1ab/nsp3530K530AAAGGCT12AY.30.00001
ORF1ab/nsp3530K530GAAGGGC12AY.3.10.000085
ORF1ab/nsp3530K530AAAGGCT12AY.3.10.000085
ORF1ab/nsp3530K530AAAGGCC12AY.3.10.000085
ORF1ab/nsp3530K530SaAGaGT12AY.3.10.000085
ORF1ab/nsp3530K530SaAGaGC12AY.3.10.000085
ORF1ab/nsp3530K530TaAGaCC12AY.3.10.000085
ORF1ab/nsp3530K530TaAGaCT12AY.3.10.000085
ORF1ab/nsp3530K530GAAGGGT12AY.3.10.000085
ORF1ab/nsp3530K530RaAgaGg22AY.39.10.000079
ORF1ab/nsp3530K530QAagCag22AY.40.000003
ORF1ab/nsp3530K530KaaGaaA22AY.420.00008
ORF1ab/nsp3530K530RaAgaGg22AY.440.000012
ORF1ab/nsp3530K530NaaGaaT22AY.740.000231
ORF1ab/nsp3530K530RaAgaGg22AY.750.000112
ORF1ab/nsp3530K530QAagCag22B.10.000018
ORF1ab/nsp3530K530NaaGaaT22B.1.1.560.035714
ORF1ab/nsp3530K530RaAgaGg22B.1.1110.00235
ORF1ab/nsp3530K530EAagGag22B.1.177.580.002663
ORF1ab/nsp3530K530QAagCag22B.1.177.810.000379
ORF1ab/nsp3530K530NaaGaaT22B.1.2210.000142
ORF1ab/nsp3530K530RaAgaGg22B.1.3510.000059
ORF1ab/nsp3530K530RaAgaGg22B.1.36.310.003503
ORF1ab/nsp3530K530NaaGaaT22B.1.5050.008772
ORF1ab/nsp3530K530QAagCag22C.36.3.10.005435
ORF1ab/nsp3530K530KaaGaaA110.055556
ORF1ab/nsp3530K530NaaGaaT11A0.000387
ORF1ab/nsp3530K530QAagCag11A0.000387
ORF1ab/nsp3530K530RaAgaGg11AD.20.000219
ORF1ab/nsp3530K530VAAgGTg11All0
ORF1ab/nsp3530K530del1aaGaa-11All0
ORF1ab/nsp3530K530CAAGTGC11All0
ORF1ab/nsp3530K530del2AAg--g11All0
ORF1ab/nsp3530K530EAagGag11AY.1000.000046
ORF1ab/nsp3530K530KaaGaaA11AY.1030.000006
ORF1ab/nsp3530K530NaaGaaT11AY.1030.000006
ORF1ab/nsp3530K530RaAgaGg11AY.1030.000006
ORF1ab/nsp3530K530TaAgaCg11AY.1030.000006
ORF1ab/nsp3530K530KaaGaaA11AY.1170.000085
ORF1ab/nsp3530K530CAAGTGC11AY.1200.000037
ORF1ab/nsp3530K530NaaGaaT11AY.120.10.000321
ORF1ab/nsp3530K530NaaGaaT11AY.230.00007
ORF1ab/nsp3530K530TaAgaCg11AY.230.00007
ORF1ab/nsp3530K530RaAgaGg11AY.260.000028
ORF1ab/nsp3530K530NaaGaaT11AY.270.000065
ORF1ab/nsp3530K530RaAgaGg11AY.270.000065
ORF1ab/nsp3530K530KaaGaaA11AY.300.000396
ORF1ab/nsp3530K530RaAgaGg11AY.390.000025
ORF1ab/nsp3530K530RaAgaGg11AY.40.000002
ORF1ab/nsp3530K530EAagGag11AY.40.000002
ORF1ab/nsp3530K530NaaGaaT11AY.4.20.000022
ORF1ab/nsp3530K530EAagGag11AY.430.000004
ORF1ab/nsp3530K530del2AAg--g11AY.430.000004
ORF1ab/nsp3530K530XAagTag11AY.430.000004
ORF1ab/nsp3530K530QAagCag11AY.440.000006
ORF1ab/nsp3530K530KaaGaaA11AY.440.000006
ORF1ab/nsp3530K530NaaGaaT11AY.450.000122
ORF1ab/nsp3530K530RaAgaGg11AY.460.000104
ORF1ab/nsp3530K530delAAG---11AY.46.20.000635
ORF1ab/nsp3530K530NaaGaaT11AY.5.30.000337
ORF1ab/nsp3530K530NaaGaaT11AY.620.000436
ORF1ab/nsp3530K530KaaGaaA11AY.660.00107
ORF1ab/nsp3530K530VAAgGTg11AY.710.000475
ORF1ab/nsp3530K530NaaGaaT11AY.710.000475
ORF1ab/nsp3530K530KaaGaaA11AY.750.000056
ORF1ab/nsp3530K530RaAgaGg11AY.810.001992
ORF1ab/nsp3530K530RaAgaGg11AY.840.000437
ORF1ab/nsp3530K530NaaGaaT11AY.970.001701
ORF1ab/nsp3530K530RaAgaGg11AY.990.001049
ORF1ab/nsp3530K530delAAG---11B.10.000009
ORF1ab/nsp3530K530TaAgaCg11B.10.000009
ORF1ab/nsp3530K530EAagGag11B.10.000009
ORF1ab/nsp3530K530NaaGaaT11B.10.000009
ORF1ab/nsp3530K530TaAgaCg11B.1.10.000018
ORF1ab/nsp3530K530EAagGag11B.1.10.000018
ORF1ab/nsp3530K530RaAgaGg11B.1.10.000018
ORF1ab/nsp3530K530del1aaGaa-11B.1.1.2160.00089
ORF1ab/nsp3530K530QAagCag11B.1.1.3290.003846
ORF1ab/nsp3530K530NaaGaaT11B.1.1.450.014085
ORF1ab/nsp3530K530delAAG---11B.1.1.5190.00004
ORF1ab/nsp3530K530KaaGaaA11B.1.1.5190.00004
ORF1ab/nsp3530K530RaAgaGg11B.1.1.630.000386
ORF1ab/nsp3530K530XAagTag11B.1.1.70.000001
ORF1ab/nsp3530K530QAagCag11B.1.1.70.000001
ORF1ab/nsp3530K530RaAgaGg11B.1.1470.000756
ORF1ab/nsp3530K530NaaGaaT11B.1.1580.02381
ORF1ab/nsp3530K530delAAG---11B.1.1600.000031
ORF1ab/nsp3530K530KaaGaaA11B.1.177.450.000381
ORF1ab/nsp3530K530delAAG---11B.1.177.90.001332
ORF1ab/nsp3530K530TaAgaCg11B.1.20.000009
ORF1ab/nsp3530K530RaAgaGg11B.1.2180.005155
ORF1ab/nsp3530K530KaaGaaA11B.1.2370.004975
ORF1ab/nsp3530K530NaaGaaT11B.1.2430.00007
ORF1ab/nsp3530K530NaaGaaT11B.1.258.40.003448
ORF1ab/nsp3530K530RaAgaGg11B.1.3110.000275
ORF1ab/nsp3530K530EAaGGaA11B.1.3110.000275
ORF1ab/nsp3530K530RaAgaGg11B.1.3380.008621
ORF1ab/nsp3530K530EAagGag11B.1.3510.00003
ORF1ab/nsp3530K530QAagCag11B.1.3510.00003
ORF1ab/nsp3530K530delAAG---11B.1.360.000146
ORF1ab/nsp3530K530NaaGaaT11B.1.36.290.000517
ORF1ab/nsp3530K530KaaGaaA11B.1.3670.000792
ORF1ab/nsp3530K530MaAgaTg11B.1.3690.000285
ORF1ab/nsp3530K530delAAG---11B.1.4150.014286
ORF1ab/nsp3530K530EAagGag11B.1.4270.00005
ORF1ab/nsp3530K530KaaGaaA11B.1.4590.004082
ORF1ab/nsp3530K530KaaGaaA11B.1.4700.001404
ORF1ab/nsp3530K530KaaGaaA11B.1.4970.000315
ORF1ab/nsp3530K530RaAgaGg11B.1.5260.000024
ORF1ab/nsp3530K530KaaGaaA11B.1.5260.000024
ORF1ab/nsp3530K530RaAgaGg11B.1.564.10.001577
ORF1ab/nsp3530K530NaaGaaT11B.1.5960.000087
ORF1ab/nsp3530K530XAaGTaA11B.1.617.10.000129
ORF1ab/nsp3530K530EAagGag11B.1.6210.000089
ORF1ab/nsp3530K530KaaGaaA11B.1.6210.000089
ORF1ab/nsp3530K530RaAgaGg11B.1.6370.000073
ORF1ab/nsp3530K530NaaGaaT11B.1.6370.000073
ORF1ab/nsp3530K530EAagGag11B.290.003509
ORF1ab/nsp3530K530KaaGaaA11B.30.000831
ORF1ab/nsp3530K530delAAG---11B.570.015152
ORF1ab/nsp3530K530NaaGaaT11B.6.60.000889
ORF1ab/nsp3530K530MaAgaTg11C.370.000116
ORF1ab/nsp3530K530KaaGaaA11D.20.000075
ORF1ab/nsp3530K530EAagGag11D.20.000075
ORF1ab/nsp3530K530RaAgaGg11P.70.004367
ORF1ab/nsp3530K530NaaGaaT11Q.80.000165
ORF1ab/nsp3530K530delAAG---11U.30.003861