CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 530 | K530N | K1348N | nonsyn | aaG | aaT | 549 | 547 | 0.996357 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530N | K1348N | nonsyn | aaG | aaC | 549 | 2 | 0.00364299 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530K | K1348K | syn | aaG | aaA | 157 | 157 | 1 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530R | K1348R | nonsyn | aAg | aGg | 146 | 146 | 1 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530Q | K1348Q | nonsyn | Aag | Cag | 126 | 126 | 1 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530del | K1348del | del | AAG | --- | 46 | 46 | 1 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530E | K1348E | nonsyn | Aag | Gag | 42 | 40 | 0.952381 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530E | K1348E | nonsyn | AaG | GaA | 42 | 2 | 0.047619 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530T | K1348T | nonsyn | aAg | aCg | 26 | 22 | 0.846154 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530T | K1348T | nonsyn | aAG | aCT | 26 | 2 | 0.0769231 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530T | K1348T | nonsyn | aAG | aCC | 26 | 2 | 0.0769231 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530M | K1348M | nonsyn | aAg | aTg | 5 | 5 | 1 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530G | K1348G | nonsyn | AAG | GGT | 4 | 2 | 0.5 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530S | K1348S | nonsyn | aAG | aGC | 4 | 2 | 0.5 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530S | K1348S | nonsyn | aAG | aGT | 4 | 2 | 0.5 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530A | K1348A | nonsyn | AAG | GCC | 4 | 2 | 0.5 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530A | K1348A | nonsyn | AAG | GCT | 4 | 2 | 0.5 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530G | K1348G | nonsyn | AAG | GGC | 4 | 2 | 0.5 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530X | K1348X | nonsyn | Aag | Tag | 3 | 2 | 0.666667 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530X | K1348X | nonsyn | AaG | TaA | 3 | 1 | 0.333333 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530del2 | K1348del2 | del | AAg | --g | 1 | 1 | 1 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530V | K1348V | nonsyn | AAg | GTg | 1 | 1 | 1 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530C | K1348C | nonsyn | AAG | TGC | 1 | 1 | 1 | 4307-4309 |
ORF1ab/nsp3 | 530 | K530del1 | K1348del1 | del | aaG | aa- | 1 | 1 | 1 | 4307-4309 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 547 | 549 | All | 0.000105 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaC | 2 | 549 | All | 0 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 157 | 157 | All | 0.00003 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 146 | 146 | All | 0.000028 |
ORF1ab/nsp3 | 530 | K530Q | Aag | Cag | 126 | 126 | All | 0.000024 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 116 | 116 | AY.4 | 0.000181 |
ORF1ab/nsp3 | 530 | K530Q | Aag | Cag | 113 | 113 | C.38 | 0.91129 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 102 | 102 | B.1.1.214 | 0.005657 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 67 | 67 | B.1.1.7 | 0.00006 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 61 | 61 | B.1.1.7 | 0.000055 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 54 | 54 | B.1.2 | 0.000475 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 46 | 46 | All | 0.000009 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 40 | 42 | All | 0.000008 |
ORF1ab/nsp3 | 530 | K530E | AaG | GaA | 2 | 42 | All | 0 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 38 | 38 | AY.47 | 0.001182 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 32 | 32 | AY.73 | 0.021291 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp3 | 530 | K530T | aAg | aCg | 22 | 26 | All | 0.000004 |
ORF1ab/nsp3 | 530 | K530T | aAG | aCC | 2 | 26 | All | 0 |
ORF1ab/nsp3 | 530 | K530T | aAG | aCT | 2 | 26 | All | 0 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 22 | 23 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 530 | K530E | AaG | GaA | 1 | 23 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 11 | 11 | AY.121 | 0.001488 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 11 | 11 | AY.37 | 0.003477 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 9 | 9 | B.1.1.385 | 0.040179 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 9 | 9 | B.1.551 | 0.011613 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 7 | 7 | AY.113 | 0.000997 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 7 | 7 | AY.28 | 0.013233 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 7 | 7 | B.1.177.10 | 0.006146 |
ORF1ab/nsp3 | 530 | K530T | aAg | aCg | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 530 | K530M | aAg | aTg | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 5 | 5 | AY.62 | 0.002179 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 5 | 5 | B | 0.000639 |
ORF1ab/nsp3 | 530 | K530T | aAg | aCg | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 530 | K530S | aAG | aGC | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 530 | K530S | aAG | aGT | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 530 | K530A | AAG | GCT | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 530 | K530A | AAG | GCC | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 530 | K530G | AAG | GGC | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 530 | K530G | AAG | GGT | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 4 | 4 | AY.108 | 0.00441 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 4 | 4 | B.1.1.416 | 0.00362 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 4 | 4 | Q.7 | 0.004444 |
ORF1ab/nsp3 | 530 | K530X | Aag | Tag | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 530 | K530X | AaG | TaA | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 530 | K530T | aAg | aCg | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 530 | K530T | aAg | aCg | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 3 | 3 | AY.50 | 0.002398 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaC | 2 | 3 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 3 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 3 | 3 | B.1.1.486 | 0.004732 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 530 | K530M | aAg | aTg | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 3 | 3 | B.1.3 | 0.007853 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 530 | K530A | AAG | GCC | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 530 | K530S | aAG | aGC | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 530 | K530T | aAG | aCT | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 530 | K530T | aAG | aCC | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 530 | K530G | AAG | GGC | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 530 | K530G | AAG | GGT | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 530 | K530S | aAG | aGT | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 530 | K530A | AAG | GCT | 1 | 2 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 530 | K530G | AAG | GGC | 1 | 2 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 530 | K530A | AAG | GCT | 1 | 2 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 530 | K530A | AAG | GCC | 1 | 2 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 530 | K530S | aAG | aGT | 1 | 2 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 530 | K530S | aAG | aGC | 1 | 2 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 530 | K530T | aAG | aCC | 1 | 2 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 530 | K530T | aAG | aCT | 1 | 2 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 530 | K530G | AAG | GGT | 1 | 2 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 530 | K530Q | Aag | Cag | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 530 | K530Q | Aag | Cag | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 2 | 2 | B.1.1.56 | 0.035714 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp3 | 530 | K530Q | Aag | Cag | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 2 | 2 | B.1.505 | 0.008772 |
ORF1ab/nsp3 | 530 | K530Q | Aag | Cag | 2 | 2 | C.36.3.1 | 0.005435 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 530 | K530Q | Aag | Cag | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 530 | K530V | AAg | GTg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 530 | K530del1 | aaG | aa- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 530 | K530C | AAG | TGC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 530 | K530del2 | AAg | --g | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 530 | K530T | aAg | aCg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 530 | K530C | AAG | TGC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 530 | K530T | aAg | aCg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 530 | K530del2 | AAg | --g | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 530 | K530X | Aag | Tag | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 530 | K530Q | Aag | Cag | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 530 | K530V | AAg | GTg | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 530 | K530T | aAg | aCg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 530 | K530T | aAg | aCg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 530 | K530del1 | aaG | aa- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 530 | K530Q | Aag | Cag | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | B.1.1.45 | 0.014085 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 530 | K530X | Aag | Tag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 530 | K530Q | Aag | Cag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 530 | K530T | aAg | aCg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 530 | K530E | AaG | GaA | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 530 | K530Q | Aag | Cag | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 530 | K530M | aAg | aTg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 530 | K530X | AaG | TaA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 530 | K530M | aAg | aTg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 530 | K530K | aaG | aaA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 530 | K530E | Aag | Gag | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 530 | K530R | aAg | aGg | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 530 | K530N | aaG | aaT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 530 | K530del | AAG | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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