CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 526

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3526T526IT1344InonsynaCaaTa2565256514295-4297
ORF1ab/nsp3526T526RT1344RnonsynaCaaGa67367314295-4297
ORF1ab/nsp3526T526TT1344TsynacAacG4223570.8459724295-4297
ORF1ab/nsp3526T526TT1344TsynacAacT422340.08056874295-4297
ORF1ab/nsp3526T526TT1344TsynacAacC422310.07345974295-4297
ORF1ab/nsp3526T526AT1344AnonsynAcaGca16516514295-4297
ORF1ab/nsp3526T526delT1344deldelACA---454514295-4297
ORF1ab/nsp3526T526KT1344KnonsynaCaaAa181814295-4297
ORF1ab/nsp3526T526LT1344LnonsynACaCTa8814295-4297
ORF1ab/nsp3526T526ST1344SnonsynAcaTca530.64295-4297
ORF1ab/nsp3526T526ST1344SnonsynAcATcT510.24295-4297
ORF1ab/nsp3526T526ST1344SnonsynaCAaGT510.24295-4297
ORF1ab/nsp3526T526PT1344PnonsynAcaCca3314295-4297
ORF1ab/nsp3526T526del1T1344del1delaCaa-a210.54295-4297
ORF1ab/nsp3526T526del1T1344del1delAcA-cT210.54295-4297
ORF1ab/nsp3526T526GT1344GnonsynACaGGa1114295-4297
ORF1ab/nsp3526T526XT1344XnonsynACaTGa1114295-4297
ORF1ab/nsp3526T526CT1344CnonsynACATGT1114295-4297
ORF1ab/nsp3526T526NT1344NnonsynaCAaAC1114295-4297

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3526T526IaCaaTa25652565All0.000491
ORF1ab/nsp3526T526IaCaaTa11911191B.1.1.70.001066
ORF1ab/nsp3526T526RaCaaGa673673All0.000129
ORF1ab/nsp3526T526RaCaaGa659659A.2.50.328842
ORF1ab/nsp3526T526IaCaaTa443443B.1.617.20.001668
ORF1ab/nsp3526T526TacAacG357422All0.000068
ORF1ab/nsp3526T526TacAacT34422All0.000007
ORF1ab/nsp3526T526TacAacC31422All0.000006
ORF1ab/nsp3526T526IaCaaTa334334AY.4.20.007244
ORF1ab/nsp3526T526AAcaGca165165All0.000032
ORF1ab/nsp3526T526TacAacG100100AY.4.50.010749
ORF1ab/nsp3526T526IaCaaTa7979AY.980.006241
ORF1ab/nsp3526T526IaCaaTa7878AY.30.000776
ORF1ab/nsp3526T526IaCaaTa5656AY.1130.007974
ORF1ab/nsp3526T526TacAacG5454AY.1060.018084
ORF1ab/nsp3526T526IaCaaTa5454AY.40.000084
ORF1ab/nsp3526T526AAcaGca5353AY.440.000323
ORF1ab/nsp3526T526delACA---4545All0.000009
ORF1ab/nsp3526T526TacAacG2042B.1.1.70.000018
ORF1ab/nsp3526T526TacAacC1542B.1.1.70.000013
ORF1ab/nsp3526T526TacAacT742B.1.1.70.000006
ORF1ab/nsp3526T526TacAacG3636B.1.1.4081
ORF1ab/nsp3526T526TacAacG1830AY.40.000028
ORF1ab/nsp3526T526TacAacT830AY.40.000012
ORF1ab/nsp3526T526TacAacC430AY.40.000006
ORF1ab/nsp3526T526AAcaGca2929B.1.617.20.000109
ORF1ab/nsp3526T526IaCaaTa2828B.1.10.000508
ORF1ab/nsp3526T526TacAacG2727B.1.10.00049
ORF1ab/nsp3526T526AAcaGca2727B.1.1.70.000024
ORF1ab/nsp3526T526IaCaaTa2626AY.98.10.001259
ORF1ab/nsp3526T526IaCaaTa2020AY.430.000089
ORF1ab/nsp3526T526IaCaaTa2020B.1.20.000176
ORF1ab/nsp3526T526KaCaaAa1818All0.000003
ORF1ab/nsp3526T526delACA---1717B.1.1.70.000015
ORF1ab/nsp3526T526IaCaaTa1515B.1.1770.000198
ORF1ab/nsp3526T526TacAacG1515B.1.4270.000757
ORF1ab/nsp3526T526IaCaaTa1313B.1.1.2220.002652
ORF1ab/nsp3526T526IaCaaTa1212AY.250.000072
ORF1ab/nsp3526T526IaCaaTa1212B.10.00011
ORF1ab/nsp3526T526TacAacG1111AY.39.10.000436
ORF1ab/nsp3526T526IaCaaTa1111AY.440.000067
ORF1ab/nsp3526T526IaCaaTa1111AY.46.60.000794
ORF1ab/nsp3526T526AAcaGca1010AY.1020.000265
ORF1ab/nsp3526T526IaCaaTa1010AY.1030.000062
ORF1ab/nsp3526T526TacAacG1010P.10.000158
ORF1ab/nsp3526T526IaCaaTa99AY.1170.000761
ORF1ab/nsp3526T526IaCaaTa99D.20.000675
ORF1ab/nsp3526T526LACaCTa88All0.000002
ORF1ab/nsp3526T526TacAacG48AY.1030.000025
ORF1ab/nsp3526T526TacAacT48AY.1030.000025
ORF1ab/nsp3526T526IaCaaTa88B.1.3110.002197
ORF1ab/nsp3526T526TacAacG78B.1.617.20.000026
ORF1ab/nsp3526T526TacAacC18B.1.617.20.000004
ORF1ab/nsp3526T526IaCaaTa77AY.1020.000186
ORF1ab/nsp3526T526delACA---77AY.40.000011
ORF1ab/nsp3526T526TacAacG77AY.430.000031
ORF1ab/nsp3526T526IaCaaTa77AY.450.000852
ORF1ab/nsp3526T526IaCaaTa77Q.80.001154
ORF1ab/nsp3526T526TacAacG66B.1.3510.000178
ORF1ab/nsp3526T526SAcaTca35All0.000001
ORF1ab/nsp3526T526SAcATcT15All0
ORF1ab/nsp3526T526SaCAaGT15All0
ORF1ab/nsp3526T526IaCaaTa55AY.1000.00023
ORF1ab/nsp3526T526KaCaaAa55B.1.4290.000118
ORF1ab/nsp3526T526IaCaaTa55B.1.5260.000118
ORF1ab/nsp3526T526TacAacT55B.1.6370.000365
ORF1ab/nsp3526T526LACaCTa440.222222
ORF1ab/nsp3526T526IaCaaTa44AY.1050.002572
ORF1ab/nsp3526T526IaCaaTa44AY.200.000155
ORF1ab/nsp3526T526AAcaGca44AY.40.000006
ORF1ab/nsp3526T526IaCaaTa44AY.470.000124
ORF1ab/nsp3526T526IaCaaTa44AY.610.000419
ORF1ab/nsp3526T526TacAacG34AY.840.001312
ORF1ab/nsp3526T526TacAacT14AY.840.000437
ORF1ab/nsp3526T526TacAacC24B.1.1.2140.000111
ORF1ab/nsp3526T526TacAacT24B.1.1.2140.000111
ORF1ab/nsp3526T526KaCaaAa44B.1.5260.000094
ORF1ab/nsp3526T526IaCaaTa44B.1.6210.000354
ORF1ab/nsp3526T526PAcaCca33All0.000001
ORF1ab/nsp3526T526TacAacG23AY.250.000012
ORF1ab/nsp3526T526TacAacC13AY.250.000006
ORF1ab/nsp3526T526TacAacG13AY.30.00001
ORF1ab/nsp3526T526TacAacC13AY.30.00001
ORF1ab/nsp3526T526TacAacT13AY.30.00001
ORF1ab/nsp3526T526IaCaaTa33AY.390.000074
ORF1ab/nsp3526T526delACA---33AY.4.50.000322
ORF1ab/nsp3526T526AAcaGca33AY.430.000013
ORF1ab/nsp3526T526SAcaTca13AY.840.000437
ORF1ab/nsp3526T526SaCAaGT13AY.840.000437
ORF1ab/nsp3526T526SAcATcT13AY.840.000437
ORF1ab/nsp3526T526TacAacG33B.10.000027
ORF1ab/nsp3526T526AAcaGca33B.1.20.000026
ORF1ab/nsp3526T526TacAacC23B.1.20.000018
ORF1ab/nsp3526T526TacAacT13B.1.20.000009
ORF1ab/nsp3526T526TacAacC33B.1.258.170.000312
ORF1ab/nsp3526T526IaCaaTa33P.1.160.001122
ORF1ab/nsp3526T526TacAacG33P.30.004785
ORF1ab/nsp3526T526PAcaCca220.111111
ORF1ab/nsp3526T526RaCaaGa22A0.000774
ORF1ab/nsp3526T526IaCaaTa22A.2.5.20.003145
ORF1ab/nsp3526T526del1aCaa-a12All0
ORF1ab/nsp3526T526del1AcA-cT12All0
ORF1ab/nsp3526T526IaCaaTa22AY.1060.00067
ORF1ab/nsp3526T526IaCaaTa22AY.1180.000125
ORF1ab/nsp3526T526IaCaaTa22AY.230.000139
ORF1ab/nsp3526T526AAcaGca22AY.250.000012
ORF1ab/nsp3526T526IaCaaTa22AY.39.10.000079
ORF1ab/nsp3526T526KaCaaAa22AY.40.000003
ORF1ab/nsp3526T526LACaCTa22AY.430.000009
ORF1ab/nsp3526T526AAcaGca22AY.530.000575
ORF1ab/nsp3526T526IaCaaTa22AY.960.004149
ORF1ab/nsp3526T526IaCaaTa22AY.99.20.000184
ORF1ab/nsp3526T526KaCaaAa22B0.000256
ORF1ab/nsp3526T526delACA---22B.10.000018
ORF1ab/nsp3526T526IaCaaTa22B.1.1.1610.007067
ORF1ab/nsp3526T526TacAacG22B.1.1.3980.006452
ORF1ab/nsp3526T526TacAacG12B.1.1600.000031
ORF1ab/nsp3526T526TacAacC12B.1.1600.000031
ORF1ab/nsp3526T526delACA---22B.1.1770.000026
ORF1ab/nsp3526T526IaCaaTa22B.1.177.210.000153
ORF1ab/nsp3526T526IaCaaTa22B.1.177.730.001133
ORF1ab/nsp3526T526AAcaGca22B.1.360.000292
ORF1ab/nsp3526T526IaCaaTa22B.1.36.80.002
ORF1ab/nsp3526T526IaCaaTa22B.1.4270.000101
ORF1ab/nsp3526T526TacAacG22B.1.4290.000047
ORF1ab/nsp3526T526IaCaaTa22B.1.5090.001732
ORF1ab/nsp3526T526TacAacG22B.1.5250.000226
ORF1ab/nsp3526T526AAcaGca22B.1.5260.000047
ORF1ab/nsp3526T526IaCaaTa22B.1.5960.000174
ORF1ab/nsp3526T526RaCaaGa22B.1.6160.04878
ORF1ab/nsp3526T526delACA---22B.1.617.20.000008
ORF1ab/nsp3526T526IaCaaTa22P.10.000032
ORF1ab/nsp3526T526AAcaGca22P.1.120.000968
ORF1ab/nsp3526T526GACaGGa11A.2.50.000499
ORF1ab/nsp3526T526IaCaaTa11AD.20.000219
ORF1ab/nsp3526T526GACaGGa11All0
ORF1ab/nsp3526T526XACaTGa11All0
ORF1ab/nsp3526T526CACATGT11All0
ORF1ab/nsp3526T526NaCAaAC11All0
ORF1ab/nsp3526T526RaCaaGa11AY.1030.000006
ORF1ab/nsp3526T526AAcaGca11AY.1030.000006
ORF1ab/nsp3526T526IaCaaTa11AY.1070.000466
ORF1ab/nsp3526T526KaCaaAa11AY.1080.001103
ORF1ab/nsp3526T526TacAacG11AY.1110.000183
ORF1ab/nsp3526T526TacAacG11AY.1140.000231
ORF1ab/nsp3526T526TacAacG11AY.1180.000063
ORF1ab/nsp3526T526TacAacG11AY.1200.000037
ORF1ab/nsp3526T526IaCaaTa11AY.1200.000037
ORF1ab/nsp3526T526TacAacG11AY.200.000039
ORF1ab/nsp3526T526KaCaaAa11AY.260.000028
ORF1ab/nsp3526T526TacAacG11AY.260.000028
ORF1ab/nsp3526T526TacAacG11AY.290.000016
ORF1ab/nsp3526T526AAcaGca11AY.30.00001
ORF1ab/nsp3526T526IaCaaTa11AY.3.10.000085
ORF1ab/nsp3526T526TacAacT11AY.3.10.000085
ORF1ab/nsp3526T526AAcaGca11AY.300.000396
ORF1ab/nsp3526T526IaCaaTa11AY.330.000067
ORF1ab/nsp3526T526TacAacG11AY.360.000148
ORF1ab/nsp3526T526AAcaGca11AY.390.000025
ORF1ab/nsp3526T526RaCaaGa11AY.40.000002
ORF1ab/nsp3526T526TacAacG11AY.4.20.000022
ORF1ab/nsp3526T526AAcaGca11AY.4.20.000022
ORF1ab/nsp3526T526IaCaaTa11AY.4.50.000107
ORF1ab/nsp3526T526SAcaTca11AY.420.00004
ORF1ab/nsp3526T526IaCaaTa11AY.420.00004
ORF1ab/nsp3526T526TacAacG11AY.420.00004
ORF1ab/nsp3526T526PAcaCca11AY.430.000004
ORF1ab/nsp3526T526RaCaaGa11AY.440.000006
ORF1ab/nsp3526T526KaCaaAa11AY.440.000006
ORF1ab/nsp3526T526TacAacG11AY.440.000006
ORF1ab/nsp3526T526AAcaGca11AY.450.000122
ORF1ab/nsp3526T526AAcaGca11AY.460.000104
ORF1ab/nsp3526T526delACA---11AY.46.20.000635
ORF1ab/nsp3526T526IaCaaTa11AY.50.000021
ORF1ab/nsp3526T526AAcaGca11AY.5.40.000277
ORF1ab/nsp3526T526IaCaaTa11AY.540.000095
ORF1ab/nsp3526T526IaCaaTa11AY.590.00053
ORF1ab/nsp3526T526TacAacG11AY.60.000041
ORF1ab/nsp3526T526AAcaGca11AY.60.000041
ORF1ab/nsp3526T526TacAacT11AY.610.000105
ORF1ab/nsp3526T526IaCaaTa11AY.620.000436
ORF1ab/nsp3526T526IaCaaTa11AY.650.000533
ORF1ab/nsp3526T526AAcaGca11AY.650.000533
ORF1ab/nsp3526T526IaCaaTa11AY.7.10.000113
ORF1ab/nsp3526T526IaCaaTa11AY.720.001361
ORF1ab/nsp3526T526AAcaGca11AY.750.000056
ORF1ab/nsp3526T526LACaCTa11AY.75.10.00018
ORF1ab/nsp3526T526CACATGT11AY.840.000437
ORF1ab/nsp3526T526XACaTGa11AY.840.000437
ORF1ab/nsp3526T526RaCaaGa11AY.840.000437
ORF1ab/nsp3526T526AAcaGca11AY.850.000427
ORF1ab/nsp3526T526TacAacG11AY.9.20.000037
ORF1ab/nsp3526T526delACA---11AY.990.001049
ORF1ab/nsp3526T526TacAacG11AY.990.001049
ORF1ab/nsp3526T526AAcaGca11B.10.000009
ORF1ab/nsp3526T526delACA---11B.1.10.000018
ORF1ab/nsp3526T526RaCaaGa11B.1.10.000018
ORF1ab/nsp3526T526LACaCTa11B.1.10.000018
ORF1ab/nsp3526T526AAcaGca11B.1.1.10.000327
ORF1ab/nsp3526T526TacAacG11B.1.1.100.001115
ORF1ab/nsp3526T526TacAacG11B.1.1.1280.007092
ORF1ab/nsp3526T526TacAacT11B.1.1.1480.008772
ORF1ab/nsp3526T526TacAacG11B.1.1.1710.003676
ORF1ab/nsp3526T526IaCaaTa11B.1.1.1860.003436
ORF1ab/nsp3526T526IaCaaTa11B.1.1.2400.004695
ORF1ab/nsp3526T526AAcaGca11B.1.1.2730.006757
ORF1ab/nsp3526T526IaCaaTa11B.1.1.280.000311
ORF1ab/nsp3526T526TacAacG11B.1.1.2940.001266
ORF1ab/nsp3526T526IaCaaTa11B.1.1.3170.000412
ORF1ab/nsp3526T526AAcaGca11B.1.1.3180.000302
ORF1ab/nsp3526T526IaCaaTa11B.1.1.3680.003086
ORF1ab/nsp3526T526IaCaaTa11B.1.1.3690.000446
ORF1ab/nsp3526T526IaCaaTa11B.1.1.3890.006061
ORF1ab/nsp3526T526TacAacG11B.1.1.4320.001266
ORF1ab/nsp3526T526IaCaaTa11B.1.1.4340.000349
ORF1ab/nsp3526T526delACA---11B.1.1.5190.00004
ORF1ab/nsp3526T526IaCaaTa11B.1.1.5190.00004
ORF1ab/nsp3526T526TacAacG11B.1.1.5190.00004
ORF1ab/nsp3526T526AAcaGca11B.1.1.5190.00004
ORF1ab/nsp3526T526IaCaaTa11B.1.1.5260.003546
ORF1ab/nsp3526T526IaCaaTa11B.1.1.570.011494
ORF1ab/nsp3526T526RaCaaGa11B.1.1.70.000001
ORF1ab/nsp3526T526AAcaGca11B.1.1.700.000341
ORF1ab/nsp3526T526AAcaGca11B.1.1.80.003584
ORF1ab/nsp3526T526del1AcA-cT11B.1.1390.000733
ORF1ab/nsp3526T526delACA---11B.1.1600.000031
ORF1ab/nsp3526T526TacAacT11B.1.1770.000013
ORF1ab/nsp3526T526AAcaGca11B.1.177.210.000076
ORF1ab/nsp3526T526IaCaaTa11B.1.177.330.001645
ORF1ab/nsp3526T526TacAacG11B.1.177.430.001477
ORF1ab/nsp3526T526IaCaaTa11B.1.177.540.000606
ORF1ab/nsp3526T526delACA---11B.1.177.560.000668
ORF1ab/nsp3526T526TacAacG11B.1.177.600.000218
ORF1ab/nsp3526T526delACA---11B.1.177.860.000183
ORF1ab/nsp3526T526KaCaaAa11B.1.20.000009
ORF1ab/nsp3526T526SAcaTca11B.1.2210.000071
ORF1ab/nsp3526T526IaCaaTa11B.1.2210.000071
ORF1ab/nsp3526T526RaCaaGa11B.1.2340.000132
ORF1ab/nsp3526T526TacAacC11B.1.2360.002053
ORF1ab/nsp3526T526IaCaaTa11B.1.2400.000216
ORF1ab/nsp3526T526IaCaaTa11B.1.2650.001271
ORF1ab/nsp3526T526IaCaaTa11B.1.3260.007576
ORF1ab/nsp3526T526IaCaaTa11B.1.3400.004292
ORF1ab/nsp3526T526RaCaaGa11B.1.3560.001727
ORF1ab/nsp3526T526delACA---11B.1.360.000146
ORF1ab/nsp3526T526AAcaGca11B.1.36.210.00216
ORF1ab/nsp3526T526AAcaGca11B.1.36.290.000517
ORF1ab/nsp3526T526delACA---11B.1.4150.014286
ORF1ab/nsp3526T526RaCaaGa11B.1.4290.000024
ORF1ab/nsp3526T526IaCaaTa11B.1.4290.000024
ORF1ab/nsp3526T526AAcaGca11B.1.4290.000024
ORF1ab/nsp3526T526IaCaaTa11B.1.438.10.000107
ORF1ab/nsp3526T526AAcaGca11B.1.466.20.000391
ORF1ab/nsp3526T526NaCAaAC11B.1.4700.001404
ORF1ab/nsp3526T526TacAacT11B.1.5090.000866
ORF1ab/nsp3526T526IaCaaTa11B.1.5250.000113
ORF1ab/nsp3526T526del1aCaa-a11B.1.5820.000491
ORF1ab/nsp3526T526AAcaGca11B.1.5950.000261
ORF1ab/nsp3526T526TacAacG11B.1.617.10.000129
ORF1ab/nsp3526T526KaCaaAa11B.1.617.20.000004
ORF1ab/nsp3526T526RaCaaGa11B.1.6230.000536
ORF1ab/nsp3526T526IaCaaTa11B.1.6370.000073
ORF1ab/nsp3526T526delACA---11B.570.015152
ORF1ab/nsp3526T526delACA---11B.610.005747
ORF1ab/nsp3526T526AAcaGca11C.370.000116
ORF1ab/nsp3526T526IaCaaTa11P.20.000187
ORF1ab/nsp3526T526IaCaaTa11Q.10.000126
ORF1ab/nsp3526T526IaCaaTa11Q.70.001111
ORF1ab/nsp3526T526delACA---11U.30.003861