CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 512 & Codon = ccT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3512P512PP1330PsynccGccT2568516520.06431774253-4255

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3512P512PccGccT165225685All0.000316
ORF1ab/nsp3512P512PccGccT23117105B.1.1.70.000207
ORF1ab/nsp3512P512PccGccT191788AY.1030.000118
ORF1ab/nsp3512P512PccGccT1291244AY.40.000201
ORF1ab/nsp3512P512PccGccT281433B.10.002574
ORF1ab/nsp3512P512PccGccT83398B.1.617.20.000313
ORF1ab/nsp3512P512PccGccT44282B.1.20.000387
ORF1ab/nsp3512P512PccGccT42255AY.250.000253
ORF1ab/nsp3512P512PccGccT7234B.1.5260.000165
ORF1ab/nsp3512P512PccGccT52186AY.430.00023
ORF1ab/nsp3512P512PccGccT51136B.1.10.000925
ORF1ab/nsp3512P512PccGccT1127B.1.6230.000536
ORF1ab/nsp3512P512PccGccT49121B.1.1770.000645
ORF1ab/nsp3512P512PccGccT59101P.10.000929
ORF1ab/nsp3512P512PccGccT175B.1.1.700.000341
ORF1ab/nsp3512P512PccGccT2274AY.440.000134
ORF1ab/nsp3512P512PccGccT6767AY.1140.015484
ORF1ab/nsp3512P512PccGccT563B.1.2580.000333
ORF1ab/nsp3512P512PccGccT4660B.1.1600.001435
ORF1ab/nsp3512P512PccGccT858AY.30.00008
ORF1ab/nsp3512P512PccGccT257AY.9.20.000073
ORF1ab/nsp3512P512PccGccT950AY.290.000142
ORF1ab/nsp3512P512PccGccT243AY.4.20.000043
ORF1ab/nsp3512P512PccGccT2143AY.470.000653
ORF1ab/nsp3512P512PccGccT3838B.1.970.974359
ORF1ab/nsp3512P512PccGccT437AY.1200.000149
ORF1ab/nsp3512P512PccGccT836AY.1020.000212
ORF1ab/nsp3512P512PccGccT1336AY.260.000368
ORF1ab/nsp3512P512PccGccT235B.1.3510.000059
ORF1ab/nsp3512P512PccGccT233Q.10.000253
ORF1ab/nsp3512P512PccGccT932AY.390.000222
ORF1ab/nsp3512P512PccGccT731AY.1190.000247
ORF1ab/nsp3512P512PccGccT230AY.340.000194
ORF1ab/nsp3512P512PccGccT428B.1.4290.000094
ORF1ab/nsp3512P512PccGccT128Q.30.000145
ORF1ab/nsp3512P512PccGccT227AY.46.60.000144
ORF1ab/nsp3512P512PccGccT1823B.1.5650.014587
ORF1ab/nsp3512P512PccGccT1022B.1.1.2140.000555
ORF1ab/nsp3512P512PccGccT1121B.1.1.5190.000437
ORF1ab/nsp3512P512PccGccT420AY.330.000267
ORF1ab/nsp3512P512PccGccT1819A.270.029801
ORF1ab/nsp3512P512PccGccT318AY.50.000062
ORF1ab/nsp3512P512PccGccT317AY.590.001589
ORF1ab/nsp3512P512PccGccT516AY.360.000741
ORF1ab/nsp3512P512PccGccT316AY.39.10.000119
ORF1ab/nsp3512P512PccGccT1515AY.540.00143
ORF1ab/nsp3512P512PccGccT314AY.200.000117
ORF1ab/nsp3512P512PccGccT514AY.230.000349
ORF1ab/nsp3512P512PccGccT514AY.60.000206
ORF1ab/nsp3512P512PccGccT114AY.75.10.00018
ORF1ab/nsp3512P512PccGccT914B.1.177.600.001966
ORF1ab/nsp3512P512PccGccT214B.1.6370.000146
ORF1ab/nsp3512P512PccGccT613AY.1000.000276
ORF1ab/nsp3512P512PccGccT813AY.450.000973
ORF1ab/nsp3512P512PccGccT213B.1.36.290.001035
ORF1ab/nsp3512P512PccGccT112AY.3.10.000085
ORF1ab/nsp3512P512PccGccT1111B.1.1.1330.09322
ORF1ab/nsp3512P512PccGccT110AY.9.10.000084
ORF1ab/nsp3512P512PccGccT510B0.000639
ORF1ab/nsp3512P512PccGccT88AY.120.10.002568
ORF1ab/nsp3512P512PccGccT18AY.610.000105
ORF1ab/nsp3512P512PccGccT18B.1.4270.00005
ORF1ab/nsp3512P512PccGccT47AY.710.0019
ORF1ab/nsp3512P512PccGccT67B.1.1.4320.007595
ORF1ab/nsp3512P512PccGccT26AY.4.50.000215
ORF1ab/nsp3512P512PccGccT66B.1.1.2840.000644
ORF1ab/nsp3512P512PccGccT66B.1.177.810.001136
ORF1ab/nsp3512P512PccGccT46B.1.5820.001963
ORF1ab/nsp3512P512PccGccT16C.370.000116
ORF1ab/nsp3512P512PccGccT36P.20.00056
ORF1ab/nsp3512P512PccGccT55AY.1070.00233
ORF1ab/nsp3512P512PccGccT35AY.16.10.00141
ORF1ab/nsp3512P512PccGccT45AY.750.000224
ORF1ab/nsp3512P512PccGccT55B.1.1.2910.003712
ORF1ab/nsp3512P512PccGccT15B.1.1.3060.000438
ORF1ab/nsp3512P512PccGccT15B.1.177.860.000183
ORF1ab/nsp3512P512PccGccT45B.1.360.000584
ORF1ab/nsp3512P512PccGccT35P.1.140.000143
ORF1ab/nsp3512P512PccGccT14AY.850.000427
ORF1ab/nsp3512P512PccGccT34AY.98.10.000145
ORF1ab/nsp3512P512PccGccT34B.1.1.3180.000905
ORF1ab/nsp3512P512PccGccT14B.1.1.390.00051
ORF1ab/nsp3512P512PccGccT24B.1.2430.000139
ORF1ab/nsp3512P512PccGccT44B.1.5740.008602
ORF1ab/nsp3512P512PccGccT14B.1.5950.000261
ORF1ab/nsp3512P512PccGccT44B.1.6090.001918
ORF1ab/nsp3512P512PccGccT23AY.270.000129
ORF1ab/nsp3512P512PccGccT13AY.4.2.10.000149
ORF1ab/nsp3512P512PccGccT23AY.46.40.000329
ORF1ab/nsp3512P512PccGccT33AY.680.000821
ORF1ab/nsp3512P512PccGccT23AY.980.000158
ORF1ab/nsp3512P512PccGccT13AY.99.20.000092
ORF1ab/nsp3512P512PccGccT33B.1.1.2070.003546
ORF1ab/nsp3512P512PccGccT13B.1.1.280.000311
ORF1ab/nsp3512P512PccGccT13B.1.1.2940.001266
ORF1ab/nsp3512P512PccGccT23B.1.1.630.000772
ORF1ab/nsp3512P512PccGccT33B.1.1470.002268
ORF1ab/nsp3512P512PccGccT13B.1.3670.000792
ORF1ab/nsp3512P512PccGccT13B.1.438.10.000107
ORF1ab/nsp3512P512PccGccT23D.20.00015
ORF1ab/nsp3512P512PccGccT23P.1.100.000539
ORF1ab/nsp3512P512PccGccT23P.1.70.000639
ORF1ab/nsp3512P512PccGccT12AY.1130.000142
ORF1ab/nsp3512P512PccGccT12AY.570.000656
ORF1ab/nsp3512P512PccGccT12AY.580.000907
ORF1ab/nsp3512P512PccGccT12AY.740.000116
ORF1ab/nsp3512P512PccGccT22AY.840.000875
ORF1ab/nsp3512P512PccGccT12AY.990.001049
ORF1ab/nsp3512P512PccGccT22B.1.1.500.001358
ORF1ab/nsp3512P512PccGccT12B.1.177.730.000566
ORF1ab/nsp3512P512PccGccT12B.1.258.140.00098
ORF1ab/nsp3512P512PccGccT22B.1.36.80.002
ORF1ab/nsp3512P512PccGccT22B.1.3820.017857
ORF1ab/nsp3512P512PccGccT22B.1.3910.002255
ORF1ab/nsp3512P512PccGccT12B.1.5240.001406
ORF1ab/nsp3512P512PccGccT22B.1.5690.028986
ORF1ab/nsp3512P512PccGccT12B.1.617.10.000129
ORF1ab/nsp3512P512PccGccT22B.60.00182
ORF1ab/nsp3512P512PccGccT22P.1.150.000465
ORF1ab/nsp3512P512PccGccT11A.23.10.000704
ORF1ab/nsp3512P512PccGccT11AY.130.000161
ORF1ab/nsp3512P512PccGccT11AY.240.000431
ORF1ab/nsp3512P512PccGccT11AY.380.000499
ORF1ab/nsp3512P512PccGccT11AY.46.30.000934
ORF1ab/nsp3512P512PccGccT11AY.5.10.003759
ORF1ab/nsp3512P512PccGccT11AY.530.000288
ORF1ab/nsp3512P512PccGccT11AY.650.000533
ORF1ab/nsp3512P512PccGccT11AY.7.10.000113
ORF1ab/nsp3512P512PccGccT11AY.960.002075
ORF1ab/nsp3512P512PccGccT11B.1.1.2190.005
ORF1ab/nsp3512P512PccGccT11B.1.1.3020.002075
ORF1ab/nsp3512P512PccGccT11B.1.1.3470.018182
ORF1ab/nsp3512P512PccGccT11B.1.1.3710.010417
ORF1ab/nsp3512P512PccGccT11B.1.1.4370.010417
ORF1ab/nsp3512P512PccGccT11B.1.1.4640.001473
ORF1ab/nsp3512P512PccGccT11B.1.1.5060.037037
ORF1ab/nsp3512P512PccGccT11B.1.220.001318
ORF1ab/nsp3512P512PccGccT11B.1.2200.01087
ORF1ab/nsp3512P512PccGccT11B.1.2340.000132
ORF1ab/nsp3512P512PccGccT11B.1.2360.002053
ORF1ab/nsp3512P512PccGccT11B.1.2790.000514
ORF1ab/nsp3512P512PccGccT11B.1.36.310.001751
ORF1ab/nsp3512P512PccGccT11B.1.4040.001302
ORF1ab/nsp3512P512PccGccT11B.1.416.10.001563
ORF1ab/nsp3512P512PccGccT11B.1.4250.002994
ORF1ab/nsp3512P512PccGccT11B.1.4620.007246
ORF1ab/nsp3512P512PccGccT11B.1.4970.000315
ORF1ab/nsp3512P512PccGccT11B.1.564.10.001577
ORF1ab/nsp3512P512PccGccT11B.1.575.10.002439
ORF1ab/nsp3512P512PccGccT11B.1.6000.005848
ORF1ab/nsp3512P512PccGccT11B.1.6010.030303
ORF1ab/nsp3512P512PccGccT11B.370.028571
ORF1ab/nsp3512P512PccGccT11B.550.00295
ORF1ab/nsp3512P512PccGccT11C.10.002392
ORF1ab/nsp3512P512PccGccT11C.110.010638
ORF1ab/nsp3512P512PccGccT11C.360.000911
ORF1ab/nsp3512P512PccGccT11Q.40.000455
ORF1ab/nsp3512P512PccGccT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.