CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 512 & Codon = ccA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3512P512PP1330PsynccGccA25685239820.9336974253-4255

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3512P512PccGccA2398225685All0.004587
ORF1ab/nsp3512P512PccGccA1686717105B.1.1.70.0151
ORF1ab/nsp3512P512PccGccA17681788AY.1030.010978
ORF1ab/nsp3512P512PccGccA11151244AY.40.001735
ORF1ab/nsp3512P512PccGccA662662AP.10.993994
ORF1ab/nsp3512P512PccGccA150433B.10.001374
ORF1ab/nsp3512P512PccGccA306398B.1.617.20.001152
ORF1ab/nsp3512P512PccGccA237282B.1.20.002087
ORF1ab/nsp3512P512PccGccA213255AY.250.001281
ORF1ab/nsp3512P512PccGccA226234B.1.5260.005312
ORF1ab/nsp3512P512PccGccA134186AY.430.000594
ORF1ab/nsp3512P512PccGccA172172B.1.1.1960.982857
ORF1ab/nsp3512P512PccGccA145145B.1.1.250.082433
ORF1ab/nsp3512P512PccGccA83136B.1.10.001506
ORF1ab/nsp3512P512PccGccA126127B.1.6230.067597
ORF1ab/nsp3512P512PccGccA72121B.1.1770.000948
ORF1ab/nsp3512P512PccGccA42101P.10.000662
ORF1ab/nsp3512P512PccGccA8282B.1.5880.074613
ORF1ab/nsp3512P512PccGccA7777N.50.136042
ORF1ab/nsp3512P512PccGccA7676B.1.5250.0086
ORF1ab/nsp3512P512PccGccA7475B.1.1.700.025239
ORF1ab/nsp3512P512PccGccA5274AY.440.000317
ORF1ab/nsp3512P512PccGccA5863B.1.2580.00386
ORF1ab/nsp3512P512PccGccA1360B.1.1600.000405
ORF1ab/nsp3512P512PccGccA5058AY.30.000497
ORF1ab/nsp3512P512PccGccA5557AY.9.20.00202
ORF1ab/nsp3512P512PccGccA4150AY.290.000647
ORF1ab/nsp3512P512PccGccA4043AY.4.20.000868
ORF1ab/nsp3512P512PccGccA1343AY.470.000404
ORF1ab/nsp3512P512PccGccA3337AY.1200.001227
ORF1ab/nsp3512P512PccGccA2836AY.1020.000742
ORF1ab/nsp3512P512PccGccA2336AY.260.000651
ORF1ab/nsp3512P512PccGccA3636Q.80.005937
ORF1ab/nsp3512P512PccGccA3335B.1.3510.000981
ORF1ab/nsp3512P512PccGccA3333AY.116.10.010277
ORF1ab/nsp3512P512PccGccA3133Q.10.003916
ORF1ab/nsp3512P512PccGccA2132AY.390.000519
ORF1ab/nsp3512P512PccGccA2431AY.1190.000847
ORF1ab/nsp3512P512PccGccA2830AY.340.002715
ORF1ab/nsp3512P512PccGccA2428B.1.4290.000565
ORF1ab/nsp3512P512PccGccA2728Q.30.003916
ORF1ab/nsp3512P512PccGccA2527AY.46.60.001805
ORF1ab/nsp3512P512PccGccA2525B.1.1.10.008167
ORF1ab/nsp3512P512PccGccA523B.1.5650.004052
ORF1ab/nsp3512P512PccGccA1222B.1.1.2140.000665
ORF1ab/nsp3512P512PccGccA1021B.1.1.5190.000397
ORF1ab/nsp3512P512PccGccA1620AY.330.001068
ORF1ab/nsp3512P512PccGccA119A.270.001656
ORF1ab/nsp3512P512PccGccA1518AY.50.00031
ORF1ab/nsp3512P512PccGccA1417AY.590.007415
ORF1ab/nsp3512P512PccGccA1116AY.360.00163
ORF1ab/nsp3512P512PccGccA1316AY.39.10.000515
ORF1ab/nsp3512P512PccGccA1616AY.730.010645
ORF1ab/nsp3512P512PccGccA1616B.1.258.30.026801
ORF1ab/nsp3512P512PccGccA1114AY.200.000428
ORF1ab/nsp3512P512PccGccA914AY.230.000628
ORF1ab/nsp3512P512PccGccA914AY.60.00037
ORF1ab/nsp3512P512PccGccA1314AY.75.10.002344
ORF1ab/nsp3512P512PccGccA1414AY.920.004022
ORF1ab/nsp3512P512PccGccA514B.1.177.600.001092
ORF1ab/nsp3512P512PccGccA1414B.1.6210.001239
ORF1ab/nsp3512P512PccGccA1214B.1.6370.000877
ORF1ab/nsp3512P512PccGccA713AY.1000.000322
ORF1ab/nsp3512P512PccGccA513AY.450.000608
ORF1ab/nsp3512P512PccGccA1313B.1.1.1280.092199
ORF1ab/nsp3512P512PccGccA1113B.1.36.290.005691
ORF1ab/nsp3512P512PccGccA1112AY.3.10.000938
ORF1ab/nsp3512P512PccGccA1212B.1.1.2160.010686
ORF1ab/nsp3512P512PccGccA910AY.9.10.000754
ORF1ab/nsp3512P512PccGccA310B0.000383
ORF1ab/nsp3512P512PccGccA99AY.4.40.003682
ORF1ab/nsp3512P512PccGccA88AY.1110.001465
ORF1ab/nsp3512P512PccGccA78AY.610.000733
ORF1ab/nsp3512P512PccGccA78B.1.4270.000353
ORF1ab/nsp3512P512PccGccA37AY.710.001425
ORF1ab/nsp3512P512PccGccA17B.1.1.4320.001266
ORF1ab/nsp3512P512PccGccA66AY.1180.000376
ORF1ab/nsp3512P512PccGccA46AY.4.50.00043
ORF1ab/nsp3512P512PccGccA56AY.670.002321
ORF1ab/nsp3512P512PccGccA66B.1.1.2220.001224
ORF1ab/nsp3512P512PccGccA66B.1.258.120.047244
ORF1ab/nsp3512P512PccGccA26B.1.5820.000981
ORF1ab/nsp3512P512PccGccA56C.370.00058
ORF1ab/nsp3512P512PccGccA36P.20.00056
ORF1ab/nsp3512P512PccGccA250.111111
ORF1ab/nsp3512P512PccGccA55AY.1100.000563
ORF1ab/nsp3512P512PccGccA55AY.1170.000423
ORF1ab/nsp3512P512PccGccA55AY.140.00044
ORF1ab/nsp3512P512PccGccA25AY.16.10.00094
ORF1ab/nsp3512P512PccGccA55AY.46.50.000992
ORF1ab/nsp3512P512PccGccA55AY.5.40.001384
ORF1ab/nsp3512P512PccGccA15AY.750.000056
ORF1ab/nsp3512P512PccGccA45B.1.1.3060.001754
ORF1ab/nsp3512P512PccGccA45B.1.177.860.000734
ORF1ab/nsp3512P512PccGccA55B.1.30.013089
ORF1ab/nsp3512P512PccGccA15B.1.360.000146
ORF1ab/nsp3512P512PccGccA55B.1.4700.007022
ORF1ab/nsp3512P512PccGccA55B.1.619.10.003207
ORF1ab/nsp3512P512PccGccA25P.1.140.000096
ORF1ab/nsp3512P512PccGccA44A0.001548
ORF1ab/nsp3512P512PccGccA44AY.350.000932
ORF1ab/nsp3512P512PccGccA34AY.850.001282
ORF1ab/nsp3512P512PccGccA14AY.98.10.000048
ORF1ab/nsp3512P512PccGccA44B.1.1.2630.006231
ORF1ab/nsp3512P512PccGccA44B.1.1.2730.027027
ORF1ab/nsp3512P512PccGccA14B.1.1.3180.000302
ORF1ab/nsp3512P512PccGccA34B.1.1.390.001529
ORF1ab/nsp3512P512PccGccA44B.1.177.160.002658
ORF1ab/nsp3512P512PccGccA44B.1.177.850.021739
ORF1ab/nsp3512P512PccGccA24B.1.2430.000139
ORF1ab/nsp3512P512PccGccA44B.1.466.20.001565
ORF1ab/nsp3512P512PccGccA44B.1.4800.00995
ORF1ab/nsp3512P512PccGccA34B.1.5950.000783
ORF1ab/nsp3512P512PccGccA44P.1.10.001271
ORF1ab/nsp3512P512PccGccA33AY.1160.00086
ORF1ab/nsp3512P512PccGccA33AY.20.001068
ORF1ab/nsp3512P512PccGccA13AY.270.000065
ORF1ab/nsp3512P512PccGccA33AY.280.005671
ORF1ab/nsp3512P512PccGccA33AY.4.10.002212
ORF1ab/nsp3512P512PccGccA23AY.4.2.10.000298
ORF1ab/nsp3512P512PccGccA33AY.460.000312
ORF1ab/nsp3512P512PccGccA13AY.46.40.000165
ORF1ab/nsp3512P512PccGccA33AY.780.004622
ORF1ab/nsp3512P512PccGccA13AY.980.000079
ORF1ab/nsp3512P512PccGccA23AY.99.20.000184
ORF1ab/nsp3512P512PccGccA33B.1.1.2410.006211
ORF1ab/nsp3512P512PccGccA23B.1.1.280.000622
ORF1ab/nsp3512P512PccGccA23B.1.1.2940.002532
ORF1ab/nsp3512P512PccGccA33B.1.1.4870.01676
ORF1ab/nsp3512P512PccGccA13B.1.1.630.000386
ORF1ab/nsp3512P512PccGccA23B.1.3670.001585
ORF1ab/nsp3512P512PccGccA33B.1.3890.003006
ORF1ab/nsp3512P512PccGccA23B.1.438.10.000215
ORF1ab/nsp3512P512PccGccA33B.1.5960.000261
ORF1ab/nsp3512P512PccGccA33B.40.006623
ORF1ab/nsp3512P512PccGccA13P.1.100.000269
ORF1ab/nsp3512P512PccGccA33P.1.170.000485
ORF1ab/nsp3512P512PccGccA13P.1.70.000319
ORF1ab/nsp3512P512PccGccA22AY.1060.00067
ORF1ab/nsp3512P512PccGccA22AY.1080.002205
ORF1ab/nsp3512P512PccGccA12AY.1130.000142
ORF1ab/nsp3512P512PccGccA22AY.550.001835
ORF1ab/nsp3512P512PccGccA12AY.570.000656
ORF1ab/nsp3512P512PccGccA12AY.580.000907
ORF1ab/nsp3512P512PccGccA22AY.70.000392
ORF1ab/nsp3512P512PccGccA22AY.700.000417
ORF1ab/nsp3512P512PccGccA12AY.740.000116
ORF1ab/nsp3512P512PccGccA12AY.990.001049
ORF1ab/nsp3512P512PccGccA22B.1.1.1700.002494
ORF1ab/nsp3512P512PccGccA22B.1.1.2320.00363
ORF1ab/nsp3512P512PccGccA22B.1.1.3170.000823
ORF1ab/nsp3512P512PccGccA22B.1.1.330.000842
ORF1ab/nsp3512P512PccGccA22B.1.1.3720.001377
ORF1ab/nsp3512P512PccGccA22B.1.1.3740.004751
ORF1ab/nsp3512P512PccGccA22B.1.1.3780.014599
ORF1ab/nsp3512P512PccGccA12B.1.110.30.000718
ORF1ab/nsp3512P512PccGccA22B.1.177.690.002967
ORF1ab/nsp3512P512PccGccA12B.1.177.730.000566
ORF1ab/nsp3512P512PccGccA22B.1.2220.003384
ORF1ab/nsp3512P512PccGccA12B.1.258.140.00098
ORF1ab/nsp3512P512PccGccA22B.1.4090.001563
ORF1ab/nsp3512P512PccGccA12B.1.5240.001406
ORF1ab/nsp3512P512PccGccA22B.1.5710.019417
ORF1ab/nsp3512P512PccGccA12B.1.617.10.000129
ORF1ab/nsp3512P512PccGccA22C.350.001548
ORF1ab/nsp3512P512PccGccA22R.10.00018
ORF1ab/nsp3512P512PccGccA11A.10.000282
ORF1ab/nsp3512P512PccGccA11A.2.50.000499
ORF1ab/nsp3512P512PccGccA11A.2.5.20.001572
ORF1ab/nsp3512P512PccGccA11A.210.00277
ORF1ab/nsp3512P512PccGccA11A.50.001923
ORF1ab/nsp3512P512PccGccA11AD.20.000219
ORF1ab/nsp3512P512PccGccA11AS.10.009524
ORF1ab/nsp3512P512PccGccA11AY.1010.00049
ORF1ab/nsp3512P512PccGccA11AY.120.000316
ORF1ab/nsp3512P512PccGccA11AY.160.00038
ORF1ab/nsp3512P512PccGccA11AY.190.00114
ORF1ab/nsp3512P512PccGccA11AY.23.10.000417
ORF1ab/nsp3512P512PccGccA11AY.29.10.000221
ORF1ab/nsp3512P512PccGccA11AY.300.000396
ORF1ab/nsp3512P512PccGccA11AY.400.000964
ORF1ab/nsp3512P512PccGccA11AY.510.000909
ORF1ab/nsp3512P512PccGccA11AY.790.001211
ORF1ab/nsp3512P512PccGccA11AY.890.004902
ORF1ab/nsp3512P512PccGccA11AY.90.000068
ORF1ab/nsp3512P512PccGccA11AY.930.000273
ORF1ab/nsp3512P512PccGccA11AZ.20.000821
ORF1ab/nsp3512P512PccGccA11B.1.1.1220.045455
ORF1ab/nsp3512P512PccGccA11B.1.1.1610.003534
ORF1ab/nsp3512P512PccGccA11B.1.1.1760.000439
ORF1ab/nsp3512P512PccGccA11B.1.1.1770.019231
ORF1ab/nsp3512P512PccGccA11B.1.1.1810.004545
ORF1ab/nsp3512P512PccGccA11B.1.1.1920.002309
ORF1ab/nsp3512P512PccGccA11B.1.1.2360.006897
ORF1ab/nsp3512P512PccGccA11B.1.1.2650.003155
ORF1ab/nsp3512P512PccGccA11B.1.1.2690.001353
ORF1ab/nsp3512P512PccGccA11B.1.1.2790.001121
ORF1ab/nsp3512P512PccGccA11B.1.1.3050.003861
ORF1ab/nsp3512P512PccGccA11B.1.1.3120.001912
ORF1ab/nsp3512P512PccGccA11B.1.1.3260.001761
ORF1ab/nsp3512P512PccGccA11B.1.1.3690.000446
ORF1ab/nsp3512P512PccGccA11B.1.1.3860.066667
ORF1ab/nsp3512P512PccGccA11B.1.1.4090.002833
ORF1ab/nsp3512P512PccGccA11B.1.1.4120.007634
ORF1ab/nsp3512P512PccGccA11B.1.1.4200.001006
ORF1ab/nsp3512P512PccGccA11B.1.1.4340.000349
ORF1ab/nsp3512P512PccGccA11B.1.1.4840.1
ORF1ab/nsp3512P512PccGccA11B.1.1.520.012195
ORF1ab/nsp3512P512PccGccA11B.1.1.560.017857
ORF1ab/nsp3512P512PccGccA11B.1.1390.000733
ORF1ab/nsp3512P512PccGccA11B.1.1420.002899
ORF1ab/nsp3512P512PccGccA11B.1.160.160.000929
ORF1ab/nsp3512P512PccGccA11B.1.160.300.002976
ORF1ab/nsp3512P512PccGccA11B.1.177.170.000821
ORF1ab/nsp3512P512PccGccA11B.1.177.210.000076
ORF1ab/nsp3512P512PccGccA11B.1.177.230.003236
ORF1ab/nsp3512P512PccGccA11B.1.177.480.003125
ORF1ab/nsp3512P512PccGccA11B.1.177.60.000977
ORF1ab/nsp3512P512PccGccA11B.1.177.70.000165
ORF1ab/nsp3512P512PccGccA11B.1.177.750.001041
ORF1ab/nsp3512P512PccGccA11B.1.177.870.000728
ORF1ab/nsp3512P512PccGccA11B.1.1880.016667
ORF1ab/nsp3512P512PccGccA11B.1.2400.000216
ORF1ab/nsp3512P512PccGccA11B.1.243.10.022222
ORF1ab/nsp3512P512PccGccA11B.1.258.20.004505
ORF1ab/nsp3512P512PccGccA11B.1.2650.001271
ORF1ab/nsp3512P512PccGccA11B.1.3240.001605
ORF1ab/nsp3512P512PccGccA11B.1.351.30.000876
ORF1ab/nsp3512P512PccGccA11B.1.36.100.004785
ORF1ab/nsp3512P512PccGccA11B.1.3690.000285
ORF1ab/nsp3512P512PccGccA11B.1.3750.00082
ORF1ab/nsp3512P512PccGccA11B.1.4000.000429
ORF1ab/nsp3512P512PccGccA11B.1.4950.009091
ORF1ab/nsp3512P512PccGccA11B.1.5090.000866
ORF1ab/nsp3512P512PccGccA11B.1.5750.000303
ORF1ab/nsp3512P512PccGccA11B.1.5850.027778
ORF1ab/nsp3512P512PccGccA11B.1.6180.004032
ORF1ab/nsp3512P512PccGccA11B.1.6270.00202
ORF1ab/nsp3512P512PccGccA11B.1.6280.000352
ORF1ab/nsp3512P512PccGccA11B.1.690.035714
ORF1ab/nsp3512P512PccGccA11C.230.005814
ORF1ab/nsp3512P512PccGccA11C.36.30.000567
ORF1ab/nsp3512P512PccGccA11P.1.120.000484
ORF1ab/nsp3512P512PccGccA11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.