CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 51 & Codon = aaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp351N51NN869NsynaaTaaC34334312870-2872

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp351N51NaaTaaC343343All0.000066
ORF1ab/nsp351N51NaaTaaC7272AY.260.002038
ORF1ab/nsp351N51NaaTaaC6060B.1.1.70.000054
ORF1ab/nsp351N51NaaTaaC4141AY.46.40.006745
ORF1ab/nsp351N51NaaTaaC2525AY.40.000039
ORF1ab/nsp351N51NaaTaaC2323AY.1030.000143
ORF1ab/nsp351N51NaaTaaC1212B.1.617.20.000045
ORF1ab/nsp351N51NaaTaaC99AY.440.000055
ORF1ab/nsp351N51NaaTaaC99AY.540.000858
ORF1ab/nsp351N51NaaTaaC66B.1.5250.000679
ORF1ab/nsp351N51NaaTaaC66P.10.000095
ORF1ab/nsp351N51NaaTaaC55AY.250.00003
ORF1ab/nsp351N51NaaTaaC55AY.430.000022
ORF1ab/nsp351N51NaaTaaC55B.1.10.000091
ORF1ab/nsp351N51NaaTaaC44AY.830.006897
ORF1ab/nsp351N51NaaTaaC44B.1.1.330.001684
ORF1ab/nsp351N51NaaTaaC44B.1.1.5190.000159
ORF1ab/nsp351N51NaaTaaC33B.10.000027
ORF1ab/nsp351N51NaaTaaC33B.1.1770.00004
ORF1ab/nsp351N51NaaTaaC33B.1.20.000026
ORF1ab/nsp351N51NaaTaaC33B.1.5260.000071
ORF1ab/nsp351N51NaaTaaC22AY.370.000632
ORF1ab/nsp351N51NaaTaaC22AY.98.10.000097
ORF1ab/nsp351N51NaaTaaC22B.1.2210.000142
ORF1ab/nsp351N51NaaTaaC22B.1.4290.000047
ORF1ab/nsp351N51NaaTaaC22B.1.5960.000174
ORF1ab/nsp351N51NaaTaaC11A.2.50.000499
ORF1ab/nsp351N51NaaTaaC11AA.10.007246
ORF1ab/nsp351N51NaaTaaC11AY.1020.000027
ORF1ab/nsp351N51NaaTaaC11AY.1190.000035
ORF1ab/nsp351N51NaaTaaC11AY.1200.000037
ORF1ab/nsp351N51NaaTaaC11AY.230.00007
ORF1ab/nsp351N51NaaTaaC11AY.270.000065
ORF1ab/nsp351N51NaaTaaC11AY.30.00001
ORF1ab/nsp351N51NaaTaaC11AY.330.000067
ORF1ab/nsp351N51NaaTaaC11AY.390.000025
ORF1ab/nsp351N51NaaTaaC11AY.460.000104
ORF1ab/nsp351N51NaaTaaC11AY.470.000031
ORF1ab/nsp351N51NaaTaaC11AY.50.000021
ORF1ab/nsp351N51NaaTaaC11AY.75.10.00018
ORF1ab/nsp351N51NaaTaaC11AY.980.000079
ORF1ab/nsp351N51NaaTaaC11B.1.1.1580.012195
ORF1ab/nsp351N51NaaTaaC11B.1.1.280.000311
ORF1ab/nsp351N51NaaTaaC11B.1.1.3160.000925
ORF1ab/nsp351N51NaaTaaC11B.1.2580.000067
ORF1ab/nsp351N51NaaTaaC11B.1.3110.000275
ORF1ab/nsp351N51NaaTaaC11B.1.3510.00003
ORF1ab/nsp351N51NaaTaaC11B.1.4270.00005
ORF1ab/nsp351N51NaaTaaC11B.1.5770.000687
ORF1ab/nsp351N51NaaTaaC11B.1.5820.000491
ORF1ab/nsp351N51NaaTaaC11B.1.6230.000536
ORF1ab/nsp351N51NaaTaaC11B.1.6280.000352
ORF1ab/nsp351N51NaaTaaC11B.1.90.006173
ORF1ab/nsp351N51NaaTaaC11B.1.930.000934
ORF1ab/nsp351N51NaaTaaC11D.20.000075
ORF1ab/nsp351N51NaaTaaC11Q.10.000126
ORF1ab/nsp351N51NaaTaaC11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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