CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 51 | N51K | N869K | nonsyn | aaT | aaA | 1623 | 1612 | 0.993222 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51K | N869K | nonsyn | aaT | aaG | 1623 | 11 | 0.00677757 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51S | N869S | nonsyn | aAt | aGt | 776 | 772 | 0.994845 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51S | N869S | nonsyn | AAt | TCt | 776 | 2 | 0.00257732 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51S | N869S | nonsyn | AAT | TCA | 776 | 2 | 0.00257732 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51N | N869N | syn | aaT | aaC | 343 | 343 | 1 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51T | N869T | nonsyn | aAt | aCt | 80 | 74 | 0.925 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51T | N869T | nonsyn | aAT | aCA | 80 | 3 | 0.0375 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51T | N869T | nonsyn | aAT | aCG | 80 | 2 | 0.025 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51T | N869T | nonsyn | aAT | aCC | 80 | 1 | 0.0125 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51D | N869D | nonsyn | Aat | Gat | 58 | 58 | 1 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51del | N869del | del | AAT | --- | 50 | 50 | 1 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51H | N869H | nonsyn | Aat | Cat | 36 | 36 | 1 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51Y | N869Y | nonsyn | Aat | Tat | 30 | 30 | 1 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51I | N869I | nonsyn | aAt | aTt | 10 | 7 | 0.7 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51I | N869I | nonsyn | aAT | aTC | 10 | 3 | 0.3 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51A | N869A | nonsyn | AAT | GCG | 5 | 3 | 0.6 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51A | N869A | nonsyn | AAt | GCt | 5 | 2 | 0.4 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51del1 | N869del1 | del | aaT | aa- | 4 | 2 | 0.5 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51del1 | N869del1 | del | Aat | -at | 4 | 2 | 0.5 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51E | N869E | nonsyn | AaT | GaG | 3 | 2 | 0.666667 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51E | N869E | nonsyn | AaT | GaA | 3 | 1 | 0.333333 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51X | N869X | nonsyn | AaT | TaA | 2 | 2 | 1 | 2870-2872 |
ORF1ab/nsp3 | 51 | N51R | N869R | nonsyn | AAt | CGt | 1 | 1 | 1 | 2870-2872 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1612 | 1623 | All | 0.000308 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaG | 11 | 1623 | All | 0.000002 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1420 | 1420 | AY.67 | 0.659239 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 772 | 776 | All | 0.000148 |
ORF1ab/nsp3 | 51 | N51S | AAt | TCt | 2 | 776 | All | 0 |
ORF1ab/nsp3 | 51 | N51S | AAT | TCA | 2 | 776 | All | 0 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 370 | 370 | B.1.1.417 | 1 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 343 | 343 | All | 0.000066 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 219 | 219 | B.1.1.348 | 0.174363 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 74 | 80 | All | 0.000014 |
ORF1ab/nsp3 | 51 | N51T | aAT | aCA | 3 | 80 | All | 0.000001 |
ORF1ab/nsp3 | 51 | N51T | aAT | aCG | 2 | 80 | All | 0 |
ORF1ab/nsp3 | 51 | N51T | aAT | aCC | 1 | 80 | All | 0 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 72 | 72 | AY.26 | 0.002038 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 67 | 68 | B.1.617.2 | 0.000252 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaG | 1 | 68 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 60 | 60 | B.1.1.7 | 0.000054 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 58 | 58 | All | 0.000011 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 50 | 50 | All | 0.00001 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 45 | 45 | AY.4 | 0.00007 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 41 | 41 | AY.46.4 | 0.006745 |
ORF1ab/nsp3 | 51 | N51H | Aat | Cat | 36 | 36 | All | 0.000007 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 30 | 30 | All | 0.000006 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 25 | 26 | B.1.1.7 | 0.000022 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaG | 1 | 26 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 25 | 25 | AY.4 | 0.000039 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 23 | 23 | AY.103 | 0.000143 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 23 | 23 | B.1.526 | 0.000541 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 51 | N51H | Aat | Cat | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 15 | 15 | B.1.526 | 0.000353 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp3 | 51 | N51I | aAt | aTt | 7 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 51 | N51I | aAT | aTC | 3 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 10 | 10 | AY.119 | 0.000353 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 9 | 9 | AY.54 | 0.000858 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 4 | 8 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 51 | N51S | AAT | TCA | 2 | 8 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 51 | N51S | AAt | TCt | 2 | 8 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 51 | N51H | Aat | Cat | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 51 | N51H | Aat | Cat | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 6 | 6 | AY.62 | 0.002614 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 4 | 6 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 51 | N51T | aAT | aCA | 2 | 6 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 51 | N51A | AAT | GCG | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 51 | N51A | AAt | GCt | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 5 | 5 | B.1.1.50 | 0.003394 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 51 | N51A | AAT | GCG | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 51 | N51A | AAt | GCt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 51 | N51T | aAT | aCG | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 51 | N51del1 | Aat | -at | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 51 | N51del1 | aaT | aa- | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 4 | 4 | AY.83 | 0.006897 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 51 | N51E | AaT | GaG | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 51 | N51E | AaT | GaA | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaG | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 2 | 3 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaG | 1 | 3 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaG | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 51 | N51I | aAt | aTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 51 | N51E | AaT | GaG | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 51 | N51K | aaT | aaG | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 51 | N51X | AaT | TaA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 51 | N51H | Aat | Cat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaG | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 51 | N51I | aAt | aTt | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 51 | N51I | aAT | aTC | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 2 | 2 | B.1.169 | 0.029851 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 51 | N51X | AaT | TaA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 51 | N51del1 | aaT | aa- | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 51 | N51T | aAT | aCA | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp3 | 51 | N51R | AAt | CGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 51 | N51I | aAt | aTt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 51 | N51del1 | aaT | aa- | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 51 | N51H | Aat | Cat | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 51 | N51I | aAT | aTC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 51 | N51H | Aat | Cat | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 51 | N51H | Aat | Cat | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 51 | N51H | Aat | Cat | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 51 | N51I | aAt | aTt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 51 | N51R | AAt | CGt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.1.158 | 0.012195 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 51 | N51E | AaT | GaA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 51 | N51del1 | Aat | -at | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 51 | N51T | aAT | aCC | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp3 | 51 | N51D | Aat | Gat | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 1 | 1 | B.1.421 | 0.007463 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 51 | N51I | aAT | aTC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp3 | 51 | N51del1 | Aat | -at | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 51 | N51I | aAt | aTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 51 | N51Y | Aat | Tat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 51 | N51A | AAT | GCG | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 51 | N51I | aAt | aTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 51 | N51T | aAt | aCt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 51 | N51K | aaT | aaA | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 51 | N51S | aAt | aGt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 51 | N51del | AAT | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 51 | N51N | aaT | aaC | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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