CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 506

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3506N506NN1324NsynaaTaaC665916659114235-4237
ORF1ab/nsp3506N506KN1324KnonsynaaTaaA4263960.9295774235-4237
ORF1ab/nsp3506N506KN1324KnonsynaaTaaG426300.07042254235-4237
ORF1ab/nsp3506N506YN1324YnonsynAatTat18518514235-4237
ORF1ab/nsp3506N506SN1324SnonsynaAtaGt1801780.9888894235-4237
ORF1ab/nsp3506N506SN1324SnonsynaATaGC18020.01111114235-4237
ORF1ab/nsp3506N506DN1324DnonsynAatGat1191180.9915974235-4237
ORF1ab/nsp3506N506DN1324DnonsynAaTGaC11910.008403364235-4237
ORF1ab/nsp3506N506TN1324TnonsynaAtaCt363614235-4237
ORF1ab/nsp3506N506delN1324deldelAAT---191914235-4237
ORF1ab/nsp3506N506HN1324HnonsynAatCat161614235-4237
ORF1ab/nsp3506N506IN1324InonsynaAtaTt121214235-4237
ORF1ab/nsp3506N506GN1324GnonsynAATGGC210.54235-4237
ORF1ab/nsp3506N506GN1324GnonsynAAtGGt210.54235-4237
ORF1ab/nsp3506N506del1N1324del1delAat-at1114235-4237
ORF1ab/nsp3506N506FN1324FnonsynAAtTTt1114235-4237
ORF1ab/nsp3506N506RN1324RnonsynaATaGA1114235-4237

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3506N506NaaTaaC6659166591All0.012736
ORF1ab/nsp3506N506NaaTaaC6436964369AY.40.100185
ORF1ab/nsp3506N506NaaTaaC12861286B.1.617.20.004842
ORF1ab/nsp3506N506KaaTaaA396426All0.000076
ORF1ab/nsp3506N506KaaTaaG30426All0.000006
ORF1ab/nsp3506N506KaaTaaA376385B.1.1.70.000337
ORF1ab/nsp3506N506KaaTaaG9385B.1.1.70.000008
ORF1ab/nsp3506N506NaaTaaC235235AY.430.001041
ORF1ab/nsp3506N506YAatTat185185All0.000035
ORF1ab/nsp3506N506SaAtaGt178180All0.000034
ORF1ab/nsp3506N506SaATaGC2180All0
ORF1ab/nsp3506N506NaaTaaC175175B.1.1.70.000157
ORF1ab/nsp3506N506DAatGat118119All0.000023
ORF1ab/nsp3506N506DAaTGaC1119All0
ORF1ab/nsp3506N506NaaTaaC115115AY.420.004626
ORF1ab/nsp3506N506YAatTat8383B.1.1.70.000074
ORF1ab/nsp3506N506SaAtaGt6868B.301
ORF1ab/nsp3506N506NaaTaaC5353AY.390.00131
ORF1ab/nsp3506N506NaaTaaC4949AY.46.60.003538
ORF1ab/nsp3506N506YAatTat4444AY.690.008214
ORF1ab/nsp3506N506SaAtaGt4141B.1.6161
ORF1ab/nsp3506N506TaAtaCt3636All0.000007
ORF1ab/nsp3506N506NaaTaaC3030B.1.5260.000705
ORF1ab/nsp3506N506DAatGat2525AY.40.000039
ORF1ab/nsp3506N506DAatGat2525Q.10.003158
ORF1ab/nsp3506N506NaaTaaC2020AY.4.50.00215
ORF1ab/nsp3506N506NaaTaaC2020AY.440.000122
ORF1ab/nsp3506N506NaaTaaC2020B.1.4270.00101
ORF1ab/nsp3506N506delAAT---1919All0.000004
ORF1ab/nsp3506N506YAatTat1717AY.250.000102
ORF1ab/nsp3506N506HAatCat1616All0.000003
ORF1ab/nsp3506N506NaaTaaC1616AY.330.001068
ORF1ab/nsp3506N506SaAtaGt1616B.1.1.70.000014
ORF1ab/nsp3506N506DAatGat1616B.1.1.70.000014
ORF1ab/nsp3506N506IaAtaTt1212All0.000002
ORF1ab/nsp3506N506NaaTaaC1212AY.890.058824
ORF1ab/nsp3506N506NaaTaaC1212B.10.00011
ORF1ab/nsp3506N506NaaTaaC1111AY.1200.000409
ORF1ab/nsp3506N506YAatTat1111AY.40.000017
ORF1ab/nsp3506N506DAatGat1010B.1.20.000088
ORF1ab/nsp3506N506NaaTaaC99AY.4.20.000195
ORF1ab/nsp3506N506DAatGat99B.10.000082
ORF1ab/nsp3506N506NaaTaaC88AY.1020.000212
ORF1ab/nsp3506N506TaAtaCt88AY.1030.00005
ORF1ab/nsp3506N506NaaTaaC88AY.30.00008
ORF1ab/nsp3506N506TaAtaCt88B.1.1.70.000007
ORF1ab/nsp3506N506SaAtaGt670.333333
ORF1ab/nsp3506N506SaATaGC170.055556
ORF1ab/nsp3506N506KaaTaaA47AY.40.000006
ORF1ab/nsp3506N506KaaTaaG37AY.40.000005
ORF1ab/nsp3506N506HAatCat77B.1.1.70.000006
ORF1ab/nsp3506N506NaaTaaC77B.1.5960.00061
ORF1ab/nsp3506N506YAatTat77B.1.617.20.000026
ORF1ab/nsp3506N506KaaTaaA66AY.330.000401
ORF1ab/nsp3506N506NaaTaaC66AY.4.2.10.000894
ORF1ab/nsp3506N506NaaTaaC66AY.840.002625
ORF1ab/nsp3506N506DAatGat66B.1.1490.020548
ORF1ab/nsp3506N506NaaTaaC66P.10.000095
ORF1ab/nsp3506N506NaaTaaC55AY.1170.000423
ORF1ab/nsp3506N506TaAtaCt55AY.290.000079
ORF1ab/nsp3506N506NaaTaaC55AY.410.00147
ORF1ab/nsp3506N506NaaTaaC55AY.50.000103
ORF1ab/nsp3506N506KaaTaaG55B.1.20.000044
ORF1ab/nsp3506N506SaAtaGt55B.1.4270.000252
ORF1ab/nsp3506N506YAatTat44AY.1130.00057
ORF1ab/nsp3506N506NaaTaaC44AY.130.000644
ORF1ab/nsp3506N506NaaTaaC44AY.320.00213
ORF1ab/nsp3506N506SaAtaGt34AY.40.000005
ORF1ab/nsp3506N506SaATaGC14AY.40.000002
ORF1ab/nsp3506N506NaaTaaC44AY.530.00115
ORF1ab/nsp3506N506NaaTaaC44AY.610.000419
ORF1ab/nsp3506N506NaaTaaC44AY.980.000316
ORF1ab/nsp3506N506SaAtaGt44B.10.000037
ORF1ab/nsp3506N506DAatGat44B.1.1.3060.001754
ORF1ab/nsp3506N506NaaTaaC44B.1.2580.000266
ORF1ab/nsp3506N506KaaTaaG44B.1.4000.001716
ORF1ab/nsp3506N506SaAtaGt44B.1.617.20.000015
ORF1ab/nsp3506N506KaaTaaA330.166667
ORF1ab/nsp3506N506IaAtaTt33AY.1030.000019
ORF1ab/nsp3506N506NaaTaaC33AY.160.001139
ORF1ab/nsp3506N506KaaTaaG33AY.30.00003
ORF1ab/nsp3506N506SaAtaGt33AY.430.000013
ORF1ab/nsp3506N506delAAT---33AY.430.000013
ORF1ab/nsp3506N506KaaTaaA23AY.470.000062
ORF1ab/nsp3506N506KaaTaaG13AY.470.000031
ORF1ab/nsp3506N506KaaTaaA23B.10.000018
ORF1ab/nsp3506N506KaaTaaG13B.10.000009
ORF1ab/nsp3506N506DAatGat33B.1.10.000054
ORF1ab/nsp3506N506delAAT---33B.1.1.70.000003
ORF1ab/nsp3506N506SaAtaGt33B.1.20.000026
ORF1ab/nsp3506N506NaaTaaC33B.1.20.000026
ORF1ab/nsp3506N506NaaTaaC33P.1.140.000143
ORF1ab/nsp3506N506TaAtaCt220.111111
ORF1ab/nsp3506N506GAATGGC120.055556
ORF1ab/nsp3506N506GAAtGGt120.055556
ORF1ab/nsp3506N506DAatGat120.055556
ORF1ab/nsp3506N506DAaTGaC120.055556
ORF1ab/nsp3506N506YAatTat22A0.000774
ORF1ab/nsp3506N506NaaTaaC22A.270.003311
ORF1ab/nsp3506N506GAAtGGt12All0
ORF1ab/nsp3506N506GAATGGC12All0
ORF1ab/nsp3506N506NaaTaaC22AY.1040.003968
ORF1ab/nsp3506N506NaaTaaC22AY.1060.00067
ORF1ab/nsp3506N506NaaTaaC22AY.1080.002205
ORF1ab/nsp3506N506NaaTaaC22AY.140.000176
ORF1ab/nsp3506N506SaAtaGt22AY.250.000012
ORF1ab/nsp3506N506TaAtaCt22AY.250.000012
ORF1ab/nsp3506N506NaaTaaC22AY.350.000466
ORF1ab/nsp3506N506SaAtaGt22AY.390.000049
ORF1ab/nsp3506N506HAatCat22AY.420.00008
ORF1ab/nsp3506N506NaaTaaC22AY.460.000208
ORF1ab/nsp3506N506NaaTaaC22AY.46.10.002053
ORF1ab/nsp3506N506SaAtaGt22AY.470.000062
ORF1ab/nsp3506N506SaAtaGt22AY.50.000041
ORF1ab/nsp3506N506NaaTaaC22AY.5.30.000675
ORF1ab/nsp3506N506NaaTaaC22AY.5.40.000553
ORF1ab/nsp3506N506NaaTaaC22AY.540.000191
ORF1ab/nsp3506N506NaaTaaC22AY.860.00166
ORF1ab/nsp3506N506NaaTaaC22AY.98.10.000097
ORF1ab/nsp3506N506NaaTaaC22AY.990.002099
ORF1ab/nsp3506N506SaAtaGt22B0.000256
ORF1ab/nsp3506N506HAatCat22B.1.10.000036
ORF1ab/nsp3506N506YAatTat22B.1.110.30.001437
ORF1ab/nsp3506N506SaAtaGt22B.1.1770.000026
ORF1ab/nsp3506N506DAatGat22B.1.1770.000026
ORF1ab/nsp3506N506DAatGat22B.1.5770.001375
ORF1ab/nsp3506N506IaAtaTt22B.1.617.20.000008
ORF1ab/nsp3506N506SaAtaGt22P.10.000032
ORF1ab/nsp3506N506DAatGat22Y.10.025641
ORF1ab/nsp3506N506RaATaGA110.055556
ORF1ab/nsp3506N506NaaTaaC110.055556
ORF1ab/nsp3506N506TaAtaCt11AD.20.000219
ORF1ab/nsp3506N506FAAtTTt11All0
ORF1ab/nsp3506N506RaATaGA11All0
ORF1ab/nsp3506N506del1Aat-at11All0
ORF1ab/nsp3506N506SaAtaGt11AU.20.002421
ORF1ab/nsp3506N506NaaTaaC11AY.1000.000046
ORF1ab/nsp3506N506DAatGat11AY.1020.000027
ORF1ab/nsp3506N506KaaTaaG11AY.1020.000027
ORF1ab/nsp3506N506DAatGat11AY.1030.000006
ORF1ab/nsp3506N506NaaTaaC11AY.1030.000006
ORF1ab/nsp3506N506NaaTaaC11AY.1090.00074
ORF1ab/nsp3506N506YAatTat11AY.1170.000085
ORF1ab/nsp3506N506DAatGat11AY.1190.000035
ORF1ab/nsp3506N506NaaTaaC11AY.1210.000135
ORF1ab/nsp3506N506TaAtaCt11AY.140.000088
ORF1ab/nsp3506N506NaaTaaC11AY.200.000039
ORF1ab/nsp3506N506NaaTaaC11AY.230.00007
ORF1ab/nsp3506N506DAatGat11AY.230.00007
ORF1ab/nsp3506N506NaaTaaC11AY.250.000006
ORF1ab/nsp3506N506KaaTaaA11AY.260.000028
ORF1ab/nsp3506N506NaaTaaC11AY.260.000028
ORF1ab/nsp3506N506DAatGat11AY.270.000065
ORF1ab/nsp3506N506YAatTat11AY.290.000016
ORF1ab/nsp3506N506SaAtaGt11AY.30.00001
ORF1ab/nsp3506N506YAatTat11AY.30.00001
ORF1ab/nsp3506N506NaaTaaC11AY.3.10.000085
ORF1ab/nsp3506N506NaaTaaC11AY.340.000097
ORF1ab/nsp3506N506NaaTaaC11AY.34.10.00051
ORF1ab/nsp3506N506DAatGat11AY.360.000148
ORF1ab/nsp3506N506HAatCat11AY.39.10.00004
ORF1ab/nsp3506N506HAatCat11AY.40.000002
ORF1ab/nsp3506N506IaAtaTt11AY.40.000002
ORF1ab/nsp3506N506NaaTaaC11AY.4.30.000842
ORF1ab/nsp3506N506YAatTat11AY.4.40.000409
ORF1ab/nsp3506N506delAAT---11AY.4.50.000107
ORF1ab/nsp3506N506YAatTat11AY.4.50.000107
ORF1ab/nsp3506N506DAatGat11AY.420.00004
ORF1ab/nsp3506N506TaAtaCt11AY.430.000004
ORF1ab/nsp3506N506HAatCat11AY.430.000004
ORF1ab/nsp3506N506delAAT---11AY.440.000006
ORF1ab/nsp3506N506SaAtaGt11AY.440.000006
ORF1ab/nsp3506N506YAatTat11AY.440.000006
ORF1ab/nsp3506N506NaaTaaC11AY.450.000122
ORF1ab/nsp3506N506TaAtaCt11AY.46.60.000072
ORF1ab/nsp3506N506NaaTaaC11AY.490.003195
ORF1ab/nsp3506N506DAatGat11AY.50.000021
ORF1ab/nsp3506N506YAatTat11AY.50.000021
ORF1ab/nsp3506N506KaaTaaA11AY.5.30.000337
ORF1ab/nsp3506N506NaaTaaC11AY.520.000814
ORF1ab/nsp3506N506NaaTaaC11AY.560.001605
ORF1ab/nsp3506N506NaaTaaC11AY.590.00053
ORF1ab/nsp3506N506SaAtaGt11AY.60.000041
ORF1ab/nsp3506N506NaaTaaC11AY.640.000595
ORF1ab/nsp3506N506NaaTaaC11AY.660.00107
ORF1ab/nsp3506N506NaaTaaC11AY.690.000187
ORF1ab/nsp3506N506HAatCat11AY.710.000475
ORF1ab/nsp3506N506NaaTaaC11AY.750.000056
ORF1ab/nsp3506N506IaAtaTt11AY.750.000056
ORF1ab/nsp3506N506NaaTaaC11AY.75.10.00018
ORF1ab/nsp3506N506NaaTaaC11AY.780.001541
ORF1ab/nsp3506N506SaAtaGt11AY.780.001541
ORF1ab/nsp3506N506NaaTaaC11AY.820.001357
ORF1ab/nsp3506N506NaaTaaC11AY.880.000884
ORF1ab/nsp3506N506SaAtaGt11AY.9.10.000084
ORF1ab/nsp3506N506NaaTaaC11AY.9.10.000084
ORF1ab/nsp3506N506NaaTaaC11AY.9.20.000037
ORF1ab/nsp3506N506TaAtaCt11AY.9.20.000037
ORF1ab/nsp3506N506NaaTaaC11AY.910.00073
ORF1ab/nsp3506N506IaAtaTt11AY.940.000443
ORF1ab/nsp3506N506TaAtaCt11AY.950.000761
ORF1ab/nsp3506N506KaaTaaG11AY.98.10.000048
ORF1ab/nsp3506N506delAAT---11AY.990.001049
ORF1ab/nsp3506N506delAAT---11B.10.000009
ORF1ab/nsp3506N506YAatTat11B.10.000009
ORF1ab/nsp3506N506NaaTaaC11B.1.10.000018
ORF1ab/nsp3506N506SaAtaGt11B.1.10.000018
ORF1ab/nsp3506N506KaaTaaA11B.1.1.1380.006061
ORF1ab/nsp3506N506NaaTaaC11B.1.1.1570.000913
ORF1ab/nsp3506N506TaAtaCt11B.1.1.2140.000055
ORF1ab/nsp3506N506delAAT---11B.1.1.2160.00089
ORF1ab/nsp3506N506NaaTaaC11B.1.1.2280.003049
ORF1ab/nsp3506N506NaaTaaC11B.1.1.2580.003257
ORF1ab/nsp3506N506NaaTaaC11B.1.1.280.000311
ORF1ab/nsp3506N506YAatTat11B.1.1.2840.000107
ORF1ab/nsp3506N506SaAtaGt11B.1.1.3060.000438
ORF1ab/nsp3506N506NaaTaaC11B.1.1.40.002976
ORF1ab/nsp3506N506DAatGat11B.1.1.4320.001266
ORF1ab/nsp3506N506TaAtaCt11B.1.1.5150.02
ORF1ab/nsp3506N506delAAT---11B.1.1.5190.00004
ORF1ab/nsp3506N506FAAtTTt11B.1.1.70.000001
ORF1ab/nsp3506N506IaAtaTt11B.1.1.70.000001
ORF1ab/nsp3506N506NaaTaaC11B.1.1110.001175
ORF1ab/nsp3506N506NaaTaaC11B.1.1600.000031
ORF1ab/nsp3506N506TaAtaCt11B.1.177.100.000878
ORF1ab/nsp3506N506TaAtaCt11B.1.177.600.000218
ORF1ab/nsp3506N506IaAtaTt11B.1.177.600.000218
ORF1ab/nsp3506N506delAAT---11B.1.177.860.000183
ORF1ab/nsp3506N506delAAT---11B.1.20.000009
ORF1ab/nsp3506N506del1Aat-at11B.1.20.000009
ORF1ab/nsp3506N506IaAtaTt11B.1.20.000009
ORF1ab/nsp3506N506YAatTat11B.1.20.000009
ORF1ab/nsp3506N506YAatTat11B.1.2400.000216
ORF1ab/nsp3506N506DAatGat11B.1.2430.00007
ORF1ab/nsp3506N506TaAtaCt11B.1.2430.00007
ORF1ab/nsp3506N506delAAT---11B.1.360.000146
ORF1ab/nsp3506N506NaaTaaC11B.1.360.000146
ORF1ab/nsp3506N506delAAT---11B.1.4150.014286
ORF1ab/nsp3506N506NaaTaaC11B.1.4260.001009
ORF1ab/nsp3506N506IaAtaTt11B.1.4290.000024
ORF1ab/nsp3506N506DAatGat11B.1.5150.014493
ORF1ab/nsp3506N506YAatTat11B.1.617.10.000129
ORF1ab/nsp3506N506HAatCat11B.1.617.20.000004
ORF1ab/nsp3506N506DAatGat11B.1.617.20.000004
ORF1ab/nsp3506N506KaaTaaG11B.1.617.20.000004
ORF1ab/nsp3506N506NaaTaaC11B.1.6210.000089
ORF1ab/nsp3506N506DAatGat11B.1.6280.000352
ORF1ab/nsp3506N506SaAtaGt11B.1.90.006173
ORF1ab/nsp3506N506delAAT---11B.570.015152
ORF1ab/nsp3506N506KaaTaaG11C.36.30.000567
ORF1ab/nsp3506N506NaaTaaC11C.370.000116
ORF1ab/nsp3506N506YAatTat11P.10.000016
ORF1ab/nsp3506N506YAatTat11P.1.100.000269
ORF1ab/nsp3506N506SaAtaGt11P.1.160.000374
ORF1ab/nsp3506N506SaAtaGt11P.1.60.001946
ORF1ab/nsp3506N506YAatTat11Q.10.000126
ORF1ab/nsp3506N506delAAT---11R.10.00009
ORF1ab/nsp3506N506delAAT---11U.30.003861
ORF1ab/nsp3506N506NaaTaaC11W.20.004831