CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 503 & Codon = Tca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3503P503SP1321SnonsynCcaTca1889188914226-4228

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3503P503SCcaTca18891889All0.000361
ORF1ab/nsp3503P503SCcaTca11531153B.1.1390.845308
ORF1ab/nsp3503P503SCcaTca9090B.1.2430.006263
ORF1ab/nsp3503P503SCcaTca6868B.1.1.70.000061
ORF1ab/nsp3503P503SCcaTca5555B.1.617.20.000207
ORF1ab/nsp3503P503SCcaTca4848AY.40.000075
ORF1ab/nsp3503P503SCcaTca4646AY.1030.000286
ORF1ab/nsp3503P503SCcaTca2929AY.430.000128
ORF1ab/nsp3503P503SCcaTca2828B.1.20.000247
ORF1ab/nsp3503P503SCcaTca2323B.10.000211
ORF1ab/nsp3503P503SCcaTca2020AY.950.015221
ORF1ab/nsp3503P503SCcaTca2020B.1.1.500.013578
ORF1ab/nsp3503P503SCcaTca1919B.1.1770.00025
ORF1ab/nsp3503P503SCcaTca1616B.1.2980.033827
ORF1ab/nsp3503P503SCcaTca1313AY.30.000129
ORF1ab/nsp3503P503SCcaTca1313AY.90.000879
ORF1ab/nsp3503P503SCcaTca1313B.1.5250.001471
ORF1ab/nsp3503P503SCcaTca1212AY.250.000072
ORF1ab/nsp3503P503SCcaTca1212B.1.5960.001046
ORF1ab/nsp3503P503SCcaTca1111AY.1010.005395
ORF1ab/nsp3503P503SCcaTca1010AY.440.000061
ORF1ab/nsp3503P503SCcaTca99AY.200.00035
ORF1ab/nsp3503P503SCcaTca99B.1.5260.000212
ORF1ab/nsp3503P503SCcaTca99P.20.00168
ORF1ab/nsp3503P503SCcaTca88B.1.10.000145
ORF1ab/nsp3503P503SCcaTca88B.1.2210.000568
ORF1ab/nsp3503P503SCcaTca88P.10.000126
ORF1ab/nsp3503P503SCcaTca77P.1.170.001132
ORF1ab/nsp3503P503SCcaTca66AY.290.000095
ORF1ab/nsp3503P503SCcaTca55AY.1020.000133
ORF1ab/nsp3503P503SCcaTca55AY.390.000124
ORF1ab/nsp3503P503SCcaTca55AY.46.40.000823
ORF1ab/nsp3503P503SCcaTca55B.1.1.5190.000199
ORF1ab/nsp3503P503SCcaTca55B.1.4290.000118
ORF1ab/nsp3503P503SCcaTca44AY.1000.000184
ORF1ab/nsp3503P503SCcaTca44AY.1130.00057
ORF1ab/nsp3503P503SCcaTca44AY.260.000113
ORF1ab/nsp3503P503SCcaTca33AY.4.20.000065
ORF1ab/nsp3503P503SCcaTca33AY.470.000093
ORF1ab/nsp3503P503SCcaTca33B.1.1.2040.009119
ORF1ab/nsp3503P503SCcaTca33B.1.5650.002431
ORF1ab/nsp3503P503SCcaTca33P.1.60.005837
ORF1ab/nsp3503P503SCcaTca33Q.10.000379
ORF1ab/nsp3503P503SCcaTca22AY.1160.000574
ORF1ab/nsp3503P503SCcaTca22AY.230.000139
ORF1ab/nsp3503P503SCcaTca22AY.270.000129
ORF1ab/nsp3503P503SCcaTca22AY.420.00008
ORF1ab/nsp3503P503SCcaTca22AY.50.000041
ORF1ab/nsp3503P503SCcaTca22AY.5.20.004926
ORF1ab/nsp3503P503SCcaTca22AY.750.000112
ORF1ab/nsp3503P503SCcaTca22AY.99.20.000184
ORF1ab/nsp3503P503SCcaTca22B.1.1.2840.000215
ORF1ab/nsp3503P503SCcaTca22B.1.1.830.00542
ORF1ab/nsp3503P503SCcaTca22B.1.360.000292
ORF1ab/nsp3503P503SCcaTca22B.1.36.220.002415
ORF1ab/nsp3503P503SCcaTca22B.1.564.10.003155
ORF1ab/nsp3503P503SCcaTca22P.1.140.000096
ORF1ab/nsp3503P503SCcaTca11A.23.10.000704
ORF1ab/nsp3503P503SCcaTca11AD.20.000219
ORF1ab/nsp3503P503SCcaTca11AY.1140.000231
ORF1ab/nsp3503P503SCcaTca11AY.1180.000063
ORF1ab/nsp3503P503SCcaTca11AY.120.10.000321
ORF1ab/nsp3503P503SCcaTca11AY.140.000088
ORF1ab/nsp3503P503SCcaTca11AY.240.000431
ORF1ab/nsp3503P503SCcaTca11AY.590.00053
ORF1ab/nsp3503P503SCcaTca11AY.60.000041
ORF1ab/nsp3503P503SCcaTca11AY.75.10.00018
ORF1ab/nsp3503P503SCcaTca11AY.780.001541
ORF1ab/nsp3503P503SCcaTca11AY.9.20.000037
ORF1ab/nsp3503P503SCcaTca11B0.000128
ORF1ab/nsp3503P503SCcaTca11B.1.1.1350.004695
ORF1ab/nsp3503P503SCcaTca11B.1.1.1700.001247
ORF1ab/nsp3503P503SCcaTca11B.1.1.3260.001761
ORF1ab/nsp3503P503SCcaTca11B.1.1600.000031
ORF1ab/nsp3503P503SCcaTca11B.1.177.190.001431
ORF1ab/nsp3503P503SCcaTca11B.1.177.240.001295
ORF1ab/nsp3503P503SCcaTca11B.1.177.440.000519
ORF1ab/nsp3503P503SCcaTca11B.1.177.730.000566
ORF1ab/nsp3503P503SCcaTca11B.1.2340.000132
ORF1ab/nsp3503P503SCcaTca11B.1.258.170.000104
ORF1ab/nsp3503P503SCcaTca11B.1.2790.000514
ORF1ab/nsp3503P503SCcaTca11B.1.3240.001605
ORF1ab/nsp3503P503SCcaTca11B.1.3510.00003
ORF1ab/nsp3503P503SCcaTca11B.1.351.20.000303
ORF1ab/nsp3503P503SCcaTca11B.1.3780.006849
ORF1ab/nsp3503P503SCcaTca11B.1.4270.00005
ORF1ab/nsp3503P503SCcaTca11B.1.4740.001901
ORF1ab/nsp3503P503SCcaTca11B.1.5270.003704
ORF1ab/nsp3503P503SCcaTca11B.1.5610.000397
ORF1ab/nsp3503P503SCcaTca11B.1.5680.001111
ORF1ab/nsp3503P503SCcaTca11B.1.5820.000491
ORF1ab/nsp3503P503SCcaTca11B.1.6050.005952
ORF1ab/nsp3503P503SCcaTca11B.1.617.10.000129
ORF1ab/nsp3503P503SCcaTca11B.1.6210.000089
ORF1ab/nsp3503P503SCcaTca11B.1.6370.000073
ORF1ab/nsp3503P503SCcaTca11C.370.000116
ORF1ab/nsp3503P503SCcaTca11N.50.001767
ORF1ab/nsp3503P503SCcaTca11P.30.001595
ORF1ab/nsp3503P503SCcaTca11Q.40.000455
ORF1ab/nsp3503P503SCcaTca11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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