CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 503 | P503S | P1321S | nonsyn | Cca | Tca | 1889 | 1889 | 1 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503P | P1321P | syn | ccA | ccG | 683 | 408 | 0.597365 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503P | P1321P | syn | ccA | ccT | 683 | 256 | 0.374817 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503P | P1321P | syn | ccA | ccC | 683 | 19 | 0.0278184 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503T | P1321T | nonsyn | Cca | Aca | 93 | 91 | 0.978495 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503T | P1321T | nonsyn | CcA | AcT | 93 | 1 | 0.0107527 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503T | P1321T | nonsyn | CcA | AcG | 93 | 1 | 0.0107527 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503Q | P1321Q | nonsyn | cCa | cAa | 35 | 35 | 1 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503L | P1321L | nonsyn | cCa | cTa | 30 | 28 | 0.933333 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503L | P1321L | nonsyn | cCA | cTT | 30 | 1 | 0.0333333 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503L | P1321L | nonsyn | cCA | cTG | 30 | 1 | 0.0333333 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503del | P1321del | del | CCA | --- | 18 | 18 | 1 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503A | P1321A | nonsyn | Cca | Gca | 6 | 3 | 0.5 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503R | P1321R | nonsyn | cCa | cGa | 6 | 3 | 0.5 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503R | P1321R | nonsyn | CCa | AGa | 6 | 2 | 0.333333 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503A | P1321A | nonsyn | CcA | GcT | 6 | 2 | 0.333333 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503A | P1321A | nonsyn | CcA | GcC | 6 | 1 | 0.166667 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503R | P1321R | nonsyn | cCA | cGC | 6 | 1 | 0.166667 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503X | P1321X | nonsyn | CCa | TGa | 3 | 2 | 0.666667 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503X | P1321X | nonsyn | CCa | TAa | 3 | 1 | 0.333333 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503M | P1321M | nonsyn | CCA | ATG | 2 | 2 | 1 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503del1 | P1321del1 | del | CCa | -Ya | 2 | 2 | 1 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503I | P1321I | nonsyn | CCA | ATT | 2 | 1 | 0.5 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503G | P1321G | nonsyn | CCA | GGC | 2 | 1 | 0.5 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503I | P1321I | nonsyn | CCa | ATa | 2 | 1 | 0.5 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503G | P1321G | nonsyn | CCa | GGa | 2 | 1 | 0.5 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503del2 | P1321del2 | del | CCa | --a | 2 | 1 | 0.5 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503del2 | P1321del2 | del | CCA | T-- | 2 | 1 | 0.5 | 4226-4228 |
ORF1ab/nsp3 | 503 | P503K | P1321K | nonsyn | CCa | AAa | 1 | 1 | 1 | 4226-4228 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1889 | 1889 | All | 0.000361 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1153 | 1153 | B.1.139 | 0.845308 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 408 | 683 | All | 0.000078 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 256 | 683 | All | 0.000049 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 19 | 683 | All | 0.000004 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 144 | 149 | AY.4 | 0.000224 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 4 | 149 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 1 | 149 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 120 | 120 | B.1.1.214 | 0.006655 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 91 | 93 | All | 0.000017 |
ORF1ab/nsp3 | 503 | P503T | CcA | AcG | 1 | 93 | All | 0 |
ORF1ab/nsp3 | 503 | P503T | CcA | AcT | 1 | 93 | All | 0 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 90 | 90 | B.1.243 | 0.006263 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 65 | 69 | B.1.2 | 0.000572 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 4 | 69 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 68 | 68 | B.1.1.7 | 0.000061 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 56 | 63 | B.1.1.7 | 0.00005 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 7 | 63 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 58 | 58 | B.1.1.7 | 0.000052 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 55 | 55 | B.1.617.2 | 0.000207 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 52 | 53 | AY.43 | 0.00023 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 1 | 53 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 48 | 48 | AY.4 | 0.000075 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 46 | 46 | AY.103 | 0.000286 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 35 | 35 | All | 0.000007 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 20 | 32 | B.1.1 | 0.000363 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 10 | 32 | B.1.1 | 0.000181 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 2 | 32 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 28 | 30 | All | 0.000005 |
ORF1ab/nsp3 | 503 | P503L | cCA | cTT | 1 | 30 | All | 0 |
ORF1ab/nsp3 | 503 | P503L | cCA | cTG | 1 | 30 | All | 0 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 29 | 29 | AY.43 | 0.000128 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 28 | 28 | B.1.2 | 0.000247 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 24 | 24 | B.1.621 | 0.002124 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 23 | 23 | B.1 | 0.000211 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 22 | 22 | B.1.1.345 | 0.956522 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 20 | 20 | AY.95 | 0.015221 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 20 | 20 | B.1.1.50 | 0.013578 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 19 | 19 | B.1.177 | 0.00025 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 18 | 18 | All | 0.000003 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 16 | 16 | B.1.298 | 0.033827 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 15 | 15 | AY.6 | 0.000617 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 9 | 14 | AY.33 | 0.000601 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 5 | 14 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 13 | 13 | AY.9 | 0.000879 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 13 | 13 | B.1.525 | 0.001471 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 11 | 11 | AY.101 | 0.005395 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 7 | 11 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 3 | 11 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 1 | 11 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 9 | 9 | P.2 | 0.00168 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 7 | 7 | P.1.17 | 0.001132 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp3 | 503 | P503R | cCa | cGa | 3 | 6 | 0.166667 | |
ORF1ab/nsp3 | 503 | P503R | CCa | AGa | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 503 | P503R | cCA | cGC | 1 | 6 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503R | cCa | cGa | 3 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 503 | P503A | Cca | Gca | 3 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 503 | P503A | CcA | GcT | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 503 | P503R | CCa | AGa | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 503 | P503A | CcA | GcC | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 503 | P503R | cCA | cGC | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 6 | 6 | B.1.177.69 | 0.008902 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 3 | 6 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 2 | 6 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 1 | 6 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 3 | 5 | 0.166667 | |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 1 | 5 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 1 | 5 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 4 | 5 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 1 | 5 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 3 | 5 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 1 | 5 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 1 | 5 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 3 | 5 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 2 | 5 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 4 | 5 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 1 | 5 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 3 | 5 | B.1 | 0.000027 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 2 | 5 | B.1 | 0.000018 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 503 | P503A | CcA | GcT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 503 | P503A | Cca | Gca | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503A | CcA | GcC | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 503 | P503L | cCA | cTT | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503T | CcA | AcT | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503T | CcA | AcG | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503L | cCA | cTG | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503X | CCa | TGa | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 503 | P503X | CCa | TAa | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 2 | 3 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 1 | 3 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 2 | 3 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 1 | 3 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 2 | 3 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 1 | 3 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 3 | 3 | B.1.1.204 | 0.009119 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 3 | 3 | P.1.6 | 0.005837 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp3 | 503 | P503X | CCa | TGa | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 503 | P503del1 | CCa | -Ya | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 503 | P503I | CCA | ATT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503G | CCa | GGa | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503G | CCA | GGC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503I | CCa | ATa | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503del1 | CCa | -Ya | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 503 | P503M | CCA | ATG | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 503 | P503G | CCa | GGa | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 503 | P503del2 | CCA | T-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 503 | P503del2 | CCa | --a | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 503 | P503I | CCA | ATT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 503 | P503I | CCa | ATa | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 503 | P503G | CCA | GGC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | AY.5.2 | 0.004926 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | B.1.1.83 | 0.00542 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | B.1.564.1 | 0.003155 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 503 | P503M | CCA | ATG | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 503 | P503K | CCa | AAa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 503 | P503M | CCA | ATG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 503 | P503A | Cca | Gca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 503 | P503del2 | CCA | T-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 503 | P503A | Cca | Gca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 503 | P503K | CCa | AAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 503 | P503X | CCa | TAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 503 | P503T | Cca | Aca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 1 | 1 | B.1.1.227 | 0.004348 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccC | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 503 | P503L | cCa | cTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 503 | P503del2 | CCa | --a | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 503 | P503Q | cCa | cAa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 503 | P503P | ccA | ccG | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 503 | P503S | Cca | Tca | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 503 | P503del | CCA | --- | 1 | 1 | U.3 | 0.003861 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|