CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 503

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3503P503SP1321SnonsynCcaTca1889188914226-4228
ORF1ab/nsp3503P503PP1321PsynccAccG6834080.5973654226-4228
ORF1ab/nsp3503P503PP1321PsynccAccT6832560.3748174226-4228
ORF1ab/nsp3503P503PP1321PsynccAccC683190.02781844226-4228
ORF1ab/nsp3503P503TP1321TnonsynCcaAca93910.9784954226-4228
ORF1ab/nsp3503P503TP1321TnonsynCcAAcT9310.01075274226-4228
ORF1ab/nsp3503P503TP1321TnonsynCcAAcG9310.01075274226-4228
ORF1ab/nsp3503P503QP1321QnonsyncCacAa353514226-4228
ORF1ab/nsp3503P503LP1321LnonsyncCacTa30280.9333334226-4228
ORF1ab/nsp3503P503LP1321LnonsyncCAcTT3010.03333334226-4228
ORF1ab/nsp3503P503LP1321LnonsyncCAcTG3010.03333334226-4228
ORF1ab/nsp3503P503delP1321deldelCCA---181814226-4228
ORF1ab/nsp3503P503AP1321AnonsynCcaGca630.54226-4228
ORF1ab/nsp3503P503RP1321RnonsyncCacGa630.54226-4228
ORF1ab/nsp3503P503RP1321RnonsynCCaAGa620.3333334226-4228
ORF1ab/nsp3503P503AP1321AnonsynCcAGcT620.3333334226-4228
ORF1ab/nsp3503P503AP1321AnonsynCcAGcC610.1666674226-4228
ORF1ab/nsp3503P503RP1321RnonsyncCAcGC610.1666674226-4228
ORF1ab/nsp3503P503XP1321XnonsynCCaTGa320.6666674226-4228
ORF1ab/nsp3503P503XP1321XnonsynCCaTAa310.3333334226-4228
ORF1ab/nsp3503P503MP1321MnonsynCCAATG2214226-4228
ORF1ab/nsp3503P503del1P1321del1delCCa-Ya2214226-4228
ORF1ab/nsp3503P503IP1321InonsynCCAATT210.54226-4228
ORF1ab/nsp3503P503GP1321GnonsynCCAGGC210.54226-4228
ORF1ab/nsp3503P503IP1321InonsynCCaATa210.54226-4228
ORF1ab/nsp3503P503GP1321GnonsynCCaGGa210.54226-4228
ORF1ab/nsp3503P503del2P1321del2delCCa--a210.54226-4228
ORF1ab/nsp3503P503del2P1321del2delCCAT--210.54226-4228
ORF1ab/nsp3503P503KP1321KnonsynCCaAAa1114226-4228

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3503P503SCcaTca18891889All0.000361
ORF1ab/nsp3503P503SCcaTca11531153B.1.1390.845308
ORF1ab/nsp3503P503PccAccG408683All0.000078
ORF1ab/nsp3503P503PccAccT256683All0.000049
ORF1ab/nsp3503P503PccAccC19683All0.000004
ORF1ab/nsp3503P503PccAccG144149AY.40.000224
ORF1ab/nsp3503P503PccAccT4149AY.40.000006
ORF1ab/nsp3503P503PccAccC1149AY.40.000002
ORF1ab/nsp3503P503PccAccT120120B.1.1.2140.006655
ORF1ab/nsp3503P503TCcaAca9193All0.000017
ORF1ab/nsp3503P503TCcAAcG193All0
ORF1ab/nsp3503P503TCcAAcT193All0
ORF1ab/nsp3503P503SCcaTca9090B.1.2430.006263
ORF1ab/nsp3503P503PccAccG6569B.1.20.000572
ORF1ab/nsp3503P503PccAccT469B.1.20.000035
ORF1ab/nsp3503P503SCcaTca6868B.1.1.70.000061
ORF1ab/nsp3503P503PccAccG5663B.1.1.70.00005
ORF1ab/nsp3503P503PccAccT763B.1.1.70.000006
ORF1ab/nsp3503P503TCcaAca5858B.1.1.70.000052
ORF1ab/nsp3503P503SCcaTca5555B.1.617.20.000207
ORF1ab/nsp3503P503PccAccG5253AY.430.00023
ORF1ab/nsp3503P503PccAccT153AY.430.000004
ORF1ab/nsp3503P503SCcaTca4848AY.40.000075
ORF1ab/nsp3503P503SCcaTca4646AY.1030.000286
ORF1ab/nsp3503P503QcCacAa3535All0.000007
ORF1ab/nsp3503P503PccAccT2032B.1.10.000363
ORF1ab/nsp3503P503PccAccG1032B.1.10.000181
ORF1ab/nsp3503P503PccAccC232B.1.10.000036
ORF1ab/nsp3503P503LcCacTa2830All0.000005
ORF1ab/nsp3503P503LcCAcTT130All0
ORF1ab/nsp3503P503LcCAcTG130All0
ORF1ab/nsp3503P503SCcaTca2929AY.430.000128
ORF1ab/nsp3503P503SCcaTca2828B.1.20.000247
ORF1ab/nsp3503P503PccAccT2424B.1.6210.002124
ORF1ab/nsp3503P503SCcaTca2323B.10.000211
ORF1ab/nsp3503P503PccAccG2222B.1.1.3450.956522
ORF1ab/nsp3503P503TCcaAca2020AY.40.000031
ORF1ab/nsp3503P503SCcaTca2020AY.950.015221
ORF1ab/nsp3503P503SCcaTca2020B.1.1.500.013578
ORF1ab/nsp3503P503SCcaTca1919B.1.1770.00025
ORF1ab/nsp3503P503delCCA---1818All0.000003
ORF1ab/nsp3503P503SCcaTca1616B.1.2980.033827
ORF1ab/nsp3503P503PccAccT1515AY.60.000617
ORF1ab/nsp3503P503PccAccG914AY.330.000601
ORF1ab/nsp3503P503PccAccT514AY.330.000334
ORF1ab/nsp3503P503SCcaTca1313AY.30.000129
ORF1ab/nsp3503P503SCcaTca1313AY.90.000879
ORF1ab/nsp3503P503SCcaTca1313B.1.5250.001471
ORF1ab/nsp3503P503SCcaTca1212AY.250.000072
ORF1ab/nsp3503P503PccAccG1212AY.30.000119
ORF1ab/nsp3503P503SCcaTca1212B.1.5960.001046
ORF1ab/nsp3503P503SCcaTca1111AY.1010.005395
ORF1ab/nsp3503P503PccAccT711B.1.617.20.000026
ORF1ab/nsp3503P503PccAccG311B.1.617.20.000011
ORF1ab/nsp3503P503PccAccC111B.1.617.20.000004
ORF1ab/nsp3503P503SCcaTca1010AY.440.000061
ORF1ab/nsp3503P503SCcaTca99AY.200.00035
ORF1ab/nsp3503P503SCcaTca99B.1.5260.000212
ORF1ab/nsp3503P503SCcaTca99P.20.00168
ORF1ab/nsp3503P503SCcaTca88B.1.10.000145
ORF1ab/nsp3503P503QcCacAa88B.1.1.70.000007
ORF1ab/nsp3503P503LcCacTa88B.1.1.70.000007
ORF1ab/nsp3503P503SCcaTca88B.1.2210.000568
ORF1ab/nsp3503P503SCcaTca88P.10.000126
ORF1ab/nsp3503P503SCcaTca77P.1.170.001132
ORF1ab/nsp3503P503QcCacAa77R.10.00063
ORF1ab/nsp3503P503RcCacGa360.166667
ORF1ab/nsp3503P503RCCaAGa260.111111
ORF1ab/nsp3503P503RcCAcGC160.055556
ORF1ab/nsp3503P503RcCacGa36All0.000001
ORF1ab/nsp3503P503ACcaGca36All0.000001
ORF1ab/nsp3503P503ACcAGcT26All0
ORF1ab/nsp3503P503RCCaAGa26All0
ORF1ab/nsp3503P503ACcAGcC16All0
ORF1ab/nsp3503P503RcCAcGC16All0
ORF1ab/nsp3503P503SCcaTca66AY.290.000095
ORF1ab/nsp3503P503LcCacTa66AY.40.000009
ORF1ab/nsp3503P503PccAccG66AY.420.000241
ORF1ab/nsp3503P503PccAccT66AY.590.003178
ORF1ab/nsp3503P503QcCacAa66B.1.177.690.008902
ORF1ab/nsp3503P503PccAccT66B.1.3510.000178
ORF1ab/nsp3503P503PccAccG36B.1.4290.000071
ORF1ab/nsp3503P503PccAccT26B.1.4290.000047
ORF1ab/nsp3503P503PccAccC16B.1.4290.000024
ORF1ab/nsp3503P503PccAccT350.166667
ORF1ab/nsp3503P503PccAccG150.055556
ORF1ab/nsp3503P503PccAccC150.055556
ORF1ab/nsp3503P503SCcaTca55AY.1020.000133
ORF1ab/nsp3503P503PccAccT45AY.1020.000106
ORF1ab/nsp3503P503PccAccC15AY.1020.000027
ORF1ab/nsp3503P503PccAccT35AY.1030.000019
ORF1ab/nsp3503P503PccAccC15AY.1030.000006
ORF1ab/nsp3503P503PccAccG15AY.1030.000006
ORF1ab/nsp3503P503PccAccT35AY.250.000018
ORF1ab/nsp3503P503PccAccG25AY.250.000012
ORF1ab/nsp3503P503SCcaTca55AY.390.000124
ORF1ab/nsp3503P503PccAccC45AY.440.000024
ORF1ab/nsp3503P503PccAccG15AY.440.000006
ORF1ab/nsp3503P503SCcaTca55AY.46.40.000823
ORF1ab/nsp3503P503PccAccG35B.10.000027
ORF1ab/nsp3503P503PccAccT25B.10.000018
ORF1ab/nsp3503P503SCcaTca55B.1.1.5190.000199
ORF1ab/nsp3503P503PccAccG55B.1.2430.000348
ORF1ab/nsp3503P503SCcaTca55B.1.4290.000118
ORF1ab/nsp3503P503ACcAGcT240.111111
ORF1ab/nsp3503P503ACcaGca140.055556
ORF1ab/nsp3503P503ACcAGcC140.055556
ORF1ab/nsp3503P503SCcaTca44AY.1000.000184
ORF1ab/nsp3503P503SCcaTca44AY.1130.00057
ORF1ab/nsp3503P503SCcaTca44AY.260.000113
ORF1ab/nsp3503P503LcCAcTT130.055556
ORF1ab/nsp3503P503TCcaAca130.055556
ORF1ab/nsp3503P503LcCacTa130.055556
ORF1ab/nsp3503P503TCcAAcT130.055556
ORF1ab/nsp3503P503TCcAAcG130.055556
ORF1ab/nsp3503P503LcCAcTG130.055556
ORF1ab/nsp3503P503XCCaTGa23All0
ORF1ab/nsp3503P503XCCaTAa13All0
ORF1ab/nsp3503P503PccAccT23AY.1000.000092
ORF1ab/nsp3503P503PccAccC13AY.1000.000046
ORF1ab/nsp3503P503SCcaTca33AY.4.20.000065
ORF1ab/nsp3503P503delCCA---33AY.430.000013
ORF1ab/nsp3503P503PccAccG23AY.450.000243
ORF1ab/nsp3503P503PccAccT13AY.450.000122
ORF1ab/nsp3503P503SCcaTca33AY.470.000093
ORF1ab/nsp3503P503PccAccG23AY.980.000158
ORF1ab/nsp3503P503PccAccT13AY.980.000079
ORF1ab/nsp3503P503SCcaTca33B.1.1.2040.009119
ORF1ab/nsp3503P503PccAccT33B.1.1.2220.000612
ORF1ab/nsp3503P503delCCA---33B.1.1.70.000003
ORF1ab/nsp3503P503SCcaTca33B.1.5650.002431
ORF1ab/nsp3503P503SCcaTca33P.1.60.005837
ORF1ab/nsp3503P503SCcaTca33Q.10.000379
ORF1ab/nsp3503P503XCCaTGa220.111111
ORF1ab/nsp3503P503del1CCa-Ya220.111111
ORF1ab/nsp3503P503ICCAATT120.055556
ORF1ab/nsp3503P503GCCaGGa120.055556
ORF1ab/nsp3503P503GCCAGGC120.055556
ORF1ab/nsp3503P503ICCaATa120.055556
ORF1ab/nsp3503P503del1CCa-Ya22All0
ORF1ab/nsp3503P503MCCAATG22All0
ORF1ab/nsp3503P503GCCaGGa12All0
ORF1ab/nsp3503P503del2CCAT--12All0
ORF1ab/nsp3503P503del2CCa--a12All0
ORF1ab/nsp3503P503ICCAATT12All0
ORF1ab/nsp3503P503ICCaATa12All0
ORF1ab/nsp3503P503GCCAGGC12All0
ORF1ab/nsp3503P503SCcaTca22AY.1160.000574
ORF1ab/nsp3503P503SCcaTca22AY.230.000139
ORF1ab/nsp3503P503SCcaTca22AY.270.000129
ORF1ab/nsp3503P503SCcaTca22AY.420.00008
ORF1ab/nsp3503P503SCcaTca22AY.50.000041
ORF1ab/nsp3503P503SCcaTca22AY.5.20.004926
ORF1ab/nsp3503P503QcCacAa22AY.60.000082
ORF1ab/nsp3503P503LcCacTa22AY.60.000082
ORF1ab/nsp3503P503SCcaTca22AY.750.000112
ORF1ab/nsp3503P503PccAccT22AY.790.002421
ORF1ab/nsp3503P503PccAccT22AY.9.20.000073
ORF1ab/nsp3503P503SCcaTca22AY.99.20.000184
ORF1ab/nsp3503P503LcCacTa22B.10.000018
ORF1ab/nsp3503P503SCcaTca22B.1.1.2840.000215
ORF1ab/nsp3503P503SCcaTca22B.1.1.830.00542
ORF1ab/nsp3503P503PccAccC12B.1.1770.000013
ORF1ab/nsp3503P503PccAccT12B.1.1770.000013
ORF1ab/nsp3503P503PccAccC22B.1.177.210.000153
ORF1ab/nsp3503P503SCcaTca22B.1.360.000292
ORF1ab/nsp3503P503SCcaTca22B.1.36.220.002415
ORF1ab/nsp3503P503SCcaTca22B.1.564.10.003155
ORF1ab/nsp3503P503TCcaAca22B.1.617.20.000008
ORF1ab/nsp3503P503SCcaTca22P.1.140.000096
ORF1ab/nsp3503P503TCcaAca22P.1.150.000465
ORF1ab/nsp3503P503QcCacAa22P.1.70.000639
ORF1ab/nsp3503P503MCCAATG110.055556
ORF1ab/nsp3503P503SCcaTca11A.23.10.000704
ORF1ab/nsp3503P503TCcaAca11A.50.001923
ORF1ab/nsp3503P503SCcaTca11AD.20.000219
ORF1ab/nsp3503P503KCCaAAa11All0
ORF1ab/nsp3503P503TCcaAca11AY.1000.000046
ORF1ab/nsp3503P503LcCacTa11AY.1020.000027
ORF1ab/nsp3503P503MCCAATG11AY.1030.000006
ORF1ab/nsp3503P503LcCacTa11AY.1030.000006
ORF1ab/nsp3503P503SCcaTca11AY.1140.000231
ORF1ab/nsp3503P503SCcaTca11AY.1180.000063
ORF1ab/nsp3503P503LcCacTa11AY.1190.000035
ORF1ab/nsp3503P503TCcaAca11AY.1200.000037
ORF1ab/nsp3503P503PccAccG11AY.1200.000037
ORF1ab/nsp3503P503SCcaTca11AY.120.10.000321
ORF1ab/nsp3503P503LcCacTa11AY.120.10.000321
ORF1ab/nsp3503P503SCcaTca11AY.140.000088
ORF1ab/nsp3503P503PccAccT11AY.200.000039
ORF1ab/nsp3503P503PccAccG11AY.230.00007
ORF1ab/nsp3503P503SCcaTca11AY.240.000431
ORF1ab/nsp3503P503QcCacAa11AY.250.000006
ORF1ab/nsp3503P503TCcaAca11AY.250.000006
ORF1ab/nsp3503P503QcCacAa11AY.260.000028
ORF1ab/nsp3503P503ACcaGca11AY.30.00001
ORF1ab/nsp3503P503QcCacAa11AY.360.000148
ORF1ab/nsp3503P503LcCacTa11AY.360.000148
ORF1ab/nsp3503P503PccAccG11AY.390.000025
ORF1ab/nsp3503P503QcCacAa11AY.40.000002
ORF1ab/nsp3503P503TCcaAca11AY.4.20.000022
ORF1ab/nsp3503P503delCCA---11AY.4.50.000107
ORF1ab/nsp3503P503TCcaAca11AY.430.000004
ORF1ab/nsp3503P503del2CCAT--11AY.440.000006
ORF1ab/nsp3503P503ACcaGca11AY.440.000006
ORF1ab/nsp3503P503PccAccT11AY.460.000104
ORF1ab/nsp3503P503PccAccT11AY.470.000031
ORF1ab/nsp3503P503PccAccC11AY.50.000021
ORF1ab/nsp3503P503SCcaTca11AY.590.00053
ORF1ab/nsp3503P503SCcaTca11AY.60.000041
ORF1ab/nsp3503P503PccAccT11AY.690.000187
ORF1ab/nsp3503P503PccAccT11AY.750.000056
ORF1ab/nsp3503P503SCcaTca11AY.75.10.00018
ORF1ab/nsp3503P503SCcaTca11AY.780.001541
ORF1ab/nsp3503P503SCcaTca11AY.9.20.000037
ORF1ab/nsp3503P503PccAccG11AY.930.000273
ORF1ab/nsp3503P503TCcaAca11AY.940.000443
ORF1ab/nsp3503P503delCCA---11AY.990.001049
ORF1ab/nsp3503P503SCcaTca11B0.000128
ORF1ab/nsp3503P503KCCaAAa11B.10.000009
ORF1ab/nsp3503P503delCCA---11B.10.000009
ORF1ab/nsp3503P503XCCaTAa11B.1.10.000018
ORF1ab/nsp3503P503QcCacAa11B.1.10.000018
ORF1ab/nsp3503P503TCcaAca11B.1.10.000018
ORF1ab/nsp3503P503PccAccG11B.1.1.10.000327
ORF1ab/nsp3503P503SCcaTca11B.1.1.1350.004695
ORF1ab/nsp3503P503SCcaTca11B.1.1.1700.001247
ORF1ab/nsp3503P503delCCA---11B.1.1.2160.00089
ORF1ab/nsp3503P503LcCacTa11B.1.1.2270.004348
ORF1ab/nsp3503P503SCcaTca11B.1.1.3260.001761
ORF1ab/nsp3503P503PccAccT11B.1.1.3980.003226
ORF1ab/nsp3503P503delCCA---11B.1.1.5190.00004
ORF1ab/nsp3503P503PccAccG11B.1.1.5230.001563
ORF1ab/nsp3503P503QcCacAa11B.1.1110.001175
ORF1ab/nsp3503P503SCcaTca11B.1.1600.000031
ORF1ab/nsp3503P503LcCacTa11B.1.1770.000013
ORF1ab/nsp3503P503SCcaTca11B.1.177.190.001431
ORF1ab/nsp3503P503SCcaTca11B.1.177.240.001295
ORF1ab/nsp3503P503SCcaTca11B.1.177.440.000519
ORF1ab/nsp3503P503PccAccG11B.1.177.540.000606
ORF1ab/nsp3503P503SCcaTca11B.1.177.730.000566
ORF1ab/nsp3503P503delCCA---11B.1.177.860.000183
ORF1ab/nsp3503P503delCCA---11B.1.20.000009
ORF1ab/nsp3503P503PccAccC11B.1.2060.000816
ORF1ab/nsp3503P503SCcaTca11B.1.2340.000132
ORF1ab/nsp3503P503SCcaTca11B.1.258.170.000104
ORF1ab/nsp3503P503SCcaTca11B.1.2790.000514
ORF1ab/nsp3503P503SCcaTca11B.1.3240.001605
ORF1ab/nsp3503P503SCcaTca11B.1.3510.00003
ORF1ab/nsp3503P503SCcaTca11B.1.351.20.000303
ORF1ab/nsp3503P503delCCA---11B.1.360.000146
ORF1ab/nsp3503P503PccAccT11B.1.36.290.000517
ORF1ab/nsp3503P503SCcaTca11B.1.3780.006849
ORF1ab/nsp3503P503SCcaTca11B.1.4270.00005
ORF1ab/nsp3503P503SCcaTca11B.1.4740.001901
ORF1ab/nsp3503P503delCCA---11B.1.5250.000113
ORF1ab/nsp3503P503PccAccT11B.1.5260.000024
ORF1ab/nsp3503P503SCcaTca11B.1.5270.003704
ORF1ab/nsp3503P503QcCacAa11B.1.5370.02
ORF1ab/nsp3503P503SCcaTca11B.1.5610.000397
ORF1ab/nsp3503P503PccAccC11B.1.5610.000397
ORF1ab/nsp3503P503SCcaTca11B.1.5680.001111
ORF1ab/nsp3503P503SCcaTca11B.1.5820.000491
ORF1ab/nsp3503P503SCcaTca11B.1.6050.005952
ORF1ab/nsp3503P503QcCacAa11B.1.6090.000479
ORF1ab/nsp3503P503SCcaTca11B.1.617.10.000129
ORF1ab/nsp3503P503LcCacTa11B.1.617.20.000004
ORF1ab/nsp3503P503SCcaTca11B.1.6210.000089
ORF1ab/nsp3503P503SCcaTca11B.1.6370.000073
ORF1ab/nsp3503P503delCCA---11B.570.015152
ORF1ab/nsp3503P503SCcaTca11C.370.000116
ORF1ab/nsp3503P503QcCacAa11D.20.000075
ORF1ab/nsp3503P503LcCacTa11D.20.000075
ORF1ab/nsp3503P503SCcaTca11N.50.001767
ORF1ab/nsp3503P503del2CCa--a11P.10.000016
ORF1ab/nsp3503P503QcCacAa11P.1.140.000048
ORF1ab/nsp3503P503PccAccG11P.1.160.000374
ORF1ab/nsp3503P503SCcaTca11P.30.001595
ORF1ab/nsp3503P503PccAccG11Q.10.000126
ORF1ab/nsp3503P503SCcaTca11Q.40.000455
ORF1ab/nsp3503P503SCcaTca11R.10.00009
ORF1ab/nsp3503P503delCCA---11R.10.00009
ORF1ab/nsp3503P503delCCA---11U.30.003861