CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 501

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3501K501EK1319EnonsynAaaGaa53053014220-4222
ORF1ab/nsp3501K501RK1319RnonsynaAaaGa102950.9313734220-4222
ORF1ab/nsp3501K501RK1319RnonsynAAACGT10220.01960784220-4222
ORF1ab/nsp3501K501RK1319RnonsynAAACGG10220.01960784220-4222
ORF1ab/nsp3501K501RK1319RnonsynAAaCGa10220.01960784220-4222
ORF1ab/nsp3501K501RK1319RnonsynaAAaGG10210.009803924220-4222
ORF1ab/nsp3501K501KK1319KsynaaAaaG838314220-4222
ORF1ab/nsp3501K501NK1319NnonsynaaAaaC62530.8548394220-4222
ORF1ab/nsp3501K501NK1319NnonsynaaAaaT6290.1451614220-4222
ORF1ab/nsp3501K501TK1319TnonsynaAaaCa393914220-4222
ORF1ab/nsp3501K501delK1319deldelAAA---212114220-4222
ORF1ab/nsp3501K501IK1319InonsynaAaaTa131314220-4222
ORF1ab/nsp3501K501QK1319QnonsynAaaCaa131314220-4222
ORF1ab/nsp3501K501XK1319XnonsynAaaTaa4414220-4222
ORF1ab/nsp3501K501VK1319VnonsynAAaGTa2214220-4222
ORF1ab/nsp3501K501SK1319SnonsynaAAaGT2214220-4222
ORF1ab/nsp3501K501del2K1319del2delAAa--a1114220-4222
ORF1ab/nsp3501K501del1K1319del1delAaA-aT1114220-4222

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3501K501EAaaGaa530530All0.000101
ORF1ab/nsp3501K501EAaaGaa407407B.1.6250.957647
ORF1ab/nsp3501K501RaAaaGa95102All0.000018
ORF1ab/nsp3501K501RAAACGG2102All0
ORF1ab/nsp3501K501RAAaCGa2102All0
ORF1ab/nsp3501K501RAAACGT2102All0
ORF1ab/nsp3501K501RaAAaGG1102All0
ORF1ab/nsp3501K501KaaAaaG8383All0.000016
ORF1ab/nsp3501K501NaaAaaC5362All0.00001
ORF1ab/nsp3501K501NaaAaaT962All0.000002
ORF1ab/nsp3501K501TaAaaCa3939All0.000007
ORF1ab/nsp3501K501RaAaaGa3939B.1.4290.000918
ORF1ab/nsp3501K501EAaaGaa3434B.10.000311
ORF1ab/nsp3501K501NaaAaaC2929B.1.1.70.000026
ORF1ab/nsp3501K501TaAaaCa2626B.1.2340.003431
ORF1ab/nsp3501K501KaaAaaG2525B.1.1.70.000022
ORF1ab/nsp3501K501delAAA---2121All0.000004
ORF1ab/nsp3501K501EAaaGaa2121AY.250.000126
ORF1ab/nsp3501K501KaaAaaG2121B.1.416.10.032813
ORF1ab/nsp3501K501IaAaaTa1313All0.000002
ORF1ab/nsp3501K501QAaaCaa1313All0.000002
ORF1ab/nsp3501K501RaAaaGa99AY.430.00004
ORF1ab/nsp3501K501RaAaaGa77AY.40.000011
ORF1ab/nsp3501K501RaAaaGa77B.1.1.70.000006
ORF1ab/nsp3501K501TaAaaCa77B.1.1.70.000006
ORF1ab/nsp3501K501RAAaCGa260.111111
ORF1ab/nsp3501K501RAAACGG260.111111
ORF1ab/nsp3501K501RAAACGT260.111111
ORF1ab/nsp3501K501EAaaGaa66B.1.1.70.000005
ORF1ab/nsp3501K501EAaaGaa66B.1.1280.003812
ORF1ab/nsp3501K501NaaAaaC55AY.40.000008
ORF1ab/nsp3501K501NaaAaaC45B.10.000037
ORF1ab/nsp3501K501NaaAaaT15B.10.000009
ORF1ab/nsp3501K501NaaAaaC55B.1.177.860.000917
ORF1ab/nsp3501K501KaaAaaG55B.1.617.20.000019
ORF1ab/nsp3501K501EAaaGaa55P.10.000079
ORF1ab/nsp3501K501XAaaTaa44All0.000001
ORF1ab/nsp3501K501RaAaaGa44AY.1030.000025
ORF1ab/nsp3501K501KaaAaaG44AY.250.000024
ORF1ab/nsp3501K501KaaAaaG44AY.40.000006
ORF1ab/nsp3501K501EAaaGaa44B.1.1770.000053
ORF1ab/nsp3501K501KaaAaaG44B.1.20.000035
ORF1ab/nsp3501K501RaAaaGa44B.1.3200.004981
ORF1ab/nsp3501K501EAaaGaa44B.1.617.20.000015
ORF1ab/nsp3501K501QAaaCaa33AY.250.000018
ORF1ab/nsp3501K501delAAA---33AY.430.000013
ORF1ab/nsp3501K501KaaAaaG33AY.810.005976
ORF1ab/nsp3501K501KaaAaaG33B.10.000027
ORF1ab/nsp3501K501delAAA---33B.1.1.70.000003
ORF1ab/nsp3501K501QAaaCaa33B.1.20.000026
ORF1ab/nsp3501K501IaAaaTa33B.1.20.000026
ORF1ab/nsp3501K501EAaaGaa33B.1.36.350.007812
ORF1ab/nsp3501K501EAaaGaa33B.1.36.80.003
ORF1ab/nsp3501K501EAaaGaa33B.1.5950.000783
ORF1ab/nsp3501K501RaAaaGa33B.1.617.20.000011
ORF1ab/nsp3501K501EAaaGaa220.111111
ORF1ab/nsp3501K501SaAAaGT220.111111
ORF1ab/nsp3501K501delAAA---220.111111
ORF1ab/nsp3501K501VAAaGTa22All0
ORF1ab/nsp3501K501SaAAaGT22All0
ORF1ab/nsp3501K501NaaAaaC22AY.1020.000053
ORF1ab/nsp3501K501EAaaGaa22AY.1030.000012
ORF1ab/nsp3501K501EAaaGaa22AY.430.000009
ORF1ab/nsp3501K501IaAaaTa22AY.430.000009
ORF1ab/nsp3501K501EAaaGaa22B0.000256
ORF1ab/nsp3501K501RaAaaGa22B.10.000018
ORF1ab/nsp3501K501IaAaaTa22B.1.10.000036
ORF1ab/nsp3501K501RaAaaGa22B.1.10.000036
ORF1ab/nsp3501K501EAaaGaa22B.1.1.280.000622
ORF1ab/nsp3501K501NaaAaaC12B.1.1770.000013
ORF1ab/nsp3501K501NaaAaaT12B.1.1770.000013
ORF1ab/nsp3501K501QAaaCaa22B.1.5750.000607
ORF1ab/nsp3501K501RaAaaGa22B.1.5760.001813
ORF1ab/nsp3501K501EAaaGaa22D.20.00015
ORF1ab/nsp3501K501del2AAa--a11All0
ORF1ab/nsp3501K501del1AaA-aT11All0
ORF1ab/nsp3501K501RaAaaGa11AY.1000.000046
ORF1ab/nsp3501K501NaaAaaC11AY.1000.000046
ORF1ab/nsp3501K501QAaaCaa11AY.1030.000006
ORF1ab/nsp3501K501NaaAaaT11AY.1030.000006
ORF1ab/nsp3501K501NaaAaaC11AY.1170.000085
ORF1ab/nsp3501K501EAaaGaa11AY.1200.000037
ORF1ab/nsp3501K501delAAA---11AY.250.000006
ORF1ab/nsp3501K501NaaAaaC11AY.260.000028
ORF1ab/nsp3501K501RaAaaGa11AY.270.000065
ORF1ab/nsp3501K501QAaaCaa11AY.290.000016
ORF1ab/nsp3501K501NaaAaaC11AY.290.000016
ORF1ab/nsp3501K501TaAaaCa11AY.290.000016
ORF1ab/nsp3501K501NaaAaaT11AY.30.00001
ORF1ab/nsp3501K501TaAaaCa11AY.350.000233
ORF1ab/nsp3501K501EAaaGaa11AY.390.000025
ORF1ab/nsp3501K501NaaAaaT11AY.390.000025
ORF1ab/nsp3501K501EAaaGaa11AY.40.000002
ORF1ab/nsp3501K501NaaAaaC11AY.4.30.000842
ORF1ab/nsp3501K501delAAA---11AY.4.50.000107
ORF1ab/nsp3501K501NaaAaaC11AY.430.000004
ORF1ab/nsp3501K501QAaaCaa11AY.430.000004
ORF1ab/nsp3501K501del2AAa--a11AY.430.000004
ORF1ab/nsp3501K501KaaAaaG11AY.440.000006
ORF1ab/nsp3501K501EAaaGaa11AY.440.000006
ORF1ab/nsp3501K501RaAAaGG11AY.440.000006
ORF1ab/nsp3501K501EAaaGaa11AY.450.000122
ORF1ab/nsp3501K501NaaAaaT11AY.460.000104
ORF1ab/nsp3501K501RaAaaGa11AY.46.20.000635
ORF1ab/nsp3501K501RaAaaGa11AY.470.000031
ORF1ab/nsp3501K501EAaaGaa11AY.5.30.000337
ORF1ab/nsp3501K501EAaaGaa11AY.530.000288
ORF1ab/nsp3501K501EAaaGaa11AY.540.000095
ORF1ab/nsp3501K501delAAA---11AY.810.001992
ORF1ab/nsp3501K501NaaAaaT11AY.980.000079
ORF1ab/nsp3501K501delAAA---11AY.990.001049
ORF1ab/nsp3501K501NaaAaaC11B0.000128
ORF1ab/nsp3501K501XAaaTaa11B.10.000009
ORF1ab/nsp3501K501delAAA---11B.10.000009
ORF1ab/nsp3501K501XAaaTaa11B.1.10.000018
ORF1ab/nsp3501K501EAaaGaa11B.1.10.000018
ORF1ab/nsp3501K501VAAaGTa11B.1.1.10.000327
ORF1ab/nsp3501K501EAaaGaa11B.1.1.10.000327
ORF1ab/nsp3501K501IaAaaTa11B.1.1.10.000327
ORF1ab/nsp3501K501EAaaGaa11B.1.1.1410.002012
ORF1ab/nsp3501K501XAaaTaa11B.1.1.1530.001095
ORF1ab/nsp3501K501delAAA---11B.1.1.2160.00089
ORF1ab/nsp3501K501TaAaaCa11B.1.1.2160.00089
ORF1ab/nsp3501K501VAAaGTa11B.1.1.260.005236
ORF1ab/nsp3501K501KaaAaaG11B.1.1.2910.000742
ORF1ab/nsp3501K501EAaaGaa11B.1.1.2940.001266
ORF1ab/nsp3501K501RaAaaGa11B.1.1.3170.000412
ORF1ab/nsp3501K501KaaAaaG11B.1.1.3290.003846
ORF1ab/nsp3501K501KaaAaaG11B.1.1.5190.00004
ORF1ab/nsp3501K501delAAA---11B.1.1.5190.00004
ORF1ab/nsp3501K501XAaaTaa11B.1.1.70.000001
ORF1ab/nsp3501K501del1AaA-aT11B.1.1.70.000001
ORF1ab/nsp3501K501IaAaaTa11B.1.1.70.000001
ORF1ab/nsp3501K501EAaaGaa11B.1.1.980.018519
ORF1ab/nsp3501K501EAaaGaa11B.1.1570.002985
ORF1ab/nsp3501K501EAaaGaa11B.1.1600.000031
ORF1ab/nsp3501K501RaAaaGa11B.1.1600.000031
ORF1ab/nsp3501K501KaaAaaG11B.1.177.570.000281
ORF1ab/nsp3501K501EAaaGaa11B.1.177.80.000752
ORF1ab/nsp3501K501delAAA---11B.1.177.860.000183
ORF1ab/nsp3501K501KaaAaaG11B.1.177.860.000183
ORF1ab/nsp3501K501EAaaGaa11B.1.214.20.0006
ORF1ab/nsp3501K501QAaaCaa11B.1.2210.000071
ORF1ab/nsp3501K501NaaAaaT11B.1.2340.000132
ORF1ab/nsp3501K501IaAaaTa11B.1.2340.000132
ORF1ab/nsp3501K501TaAaaCa11B.1.2400.000216
ORF1ab/nsp3501K501IaAaaTa11B.1.2430.00007
ORF1ab/nsp3501K501EAaaGaa11B.1.2430.00007
ORF1ab/nsp3501K501RaAaaGa11B.1.2430.00007
ORF1ab/nsp3501K501QAaaCaa11B.1.2580.000067
ORF1ab/nsp3501K501RaAaaGa11B.1.258.70.001912
ORF1ab/nsp3501K501RaAaaGa11B.1.3110.000275
ORF1ab/nsp3501K501NaaAaaT11B.1.3510.00003
ORF1ab/nsp3501K501delAAA---11B.1.360.000146
ORF1ab/nsp3501K501TaAaaCa11B.1.360.000146
ORF1ab/nsp3501K501KaaAaaG11B.1.3770.004566
ORF1ab/nsp3501K501EAaaGaa11B.1.3960.000706
ORF1ab/nsp3501K501EAaaGaa11B.1.4090.000781
ORF1ab/nsp3501K501EAaaGaa11B.1.4290.000024
ORF1ab/nsp3501K501KaaAaaG11B.1.4430.004673
ORF1ab/nsp3501K501RaAaaGa11B.1.4460.02
ORF1ab/nsp3501K501IaAaaTa11B.1.4460.02
ORF1ab/nsp3501K501EAaaGaa11B.1.4740.001901
ORF1ab/nsp3501K501RaAaaGa11B.1.5670.003333
ORF1ab/nsp3501K501TaAaaCa11B.1.617.20.000004
ORF1ab/nsp3501K501RaAaaGa11B.1.6210.000089
ORF1ab/nsp3501K501KaaAaaG11B.1.6210.000089
ORF1ab/nsp3501K501KaaAaaG11B.420.033333
ORF1ab/nsp3501K501delAAA---11B.570.015152
ORF1ab/nsp3501K501KaaAaaG11D.20.000075
ORF1ab/nsp3501K501RaAaaGa11D.20.000075
ORF1ab/nsp3501K501RaAaaGa11P.10.000016
ORF1ab/nsp3501K501delAAA---11P.10.000016
ORF1ab/nsp3501K501KaaAaaG11P.1.170.000162
ORF1ab/nsp3501K501IaAaaTa11P.1.170.000162
ORF1ab/nsp3501K501KaaAaaG11Q.30.000145
ORF1ab/nsp3501K501RaAaaGa11Q.30.000145
ORF1ab/nsp3501K501KaaAaaG11R.10.00009
ORF1ab/nsp3501K501RaAaaGa11R.10.00009
ORF1ab/nsp3501K501delAAA---11R.10.00009
ORF1ab/nsp3501K501delAAA---11U.30.003861