CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 50 & Codon = gCa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp350V50AV868AnonsyngTagCa16016012867-2869

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp350V50AgTagCa160160All0.000031
ORF1ab/nsp350V50AgTagCa105105AY.40.000163
ORF1ab/nsp350V50AgTagCa1313AY.30.000129
ORF1ab/nsp350V50AgTagCa99AY.1030.000056
ORF1ab/nsp350V50AgTagCa77B.1.20.000062
ORF1ab/nsp350V50AgTagCa66B.1.1.70.000005
ORF1ab/nsp350V50AgTagCa33B.1.617.20.000011
ORF1ab/nsp350V50AgTagCa33B.1.621.10.001517
ORF1ab/nsp350V50AgTagCa22AY.450.000243
ORF1ab/nsp350V50AgTagCa22B.1.2430.000139
ORF1ab/nsp350V50AgTagCa22B.1.617.10.000258
ORF1ab/nsp350V50AgTagCa11AY.320.000532
ORF1ab/nsp350V50AgTagCa11AY.420.00004
ORF1ab/nsp350V50AgTagCa11AY.440.000006
ORF1ab/nsp350V50AgTagCa11AY.550.000917
ORF1ab/nsp350V50AgTagCa11B.10.000009
ORF1ab/nsp350V50AgTagCa11B.1.177.100.000878
ORF1ab/nsp350V50AgTagCa11C.370.000116
ORF1ab/nsp350V50AgTagCa11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.