CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 50 | V50L | V868L | nonsyn | Gta | Tta | 2386 | 2380 | 0.997485 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50L | V868L | nonsyn | Gta | Cta | 2386 | 4 | 0.00167645 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50L | V868L | nonsyn | GtA | TtG | 2386 | 1 | 0.000419111 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50L | V868L | nonsyn | GtA | CtG | 2386 | 1 | 0.000419111 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50V | V868V | syn | gtA | gtG | 1744 | 1694 | 0.97133 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50V | V868V | syn | gtA | gtT | 1744 | 46 | 0.0263761 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50V | V868V | syn | gtA | gtC | 1744 | 4 | 0.00229358 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50I | V868I | nonsyn | Gta | Ata | 234 | 230 | 0.982906 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50I | V868I | nonsyn | GtA | AtC | 234 | 2 | 0.00854701 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50I | V868I | nonsyn | GtA | AtT | 234 | 2 | 0.00854701 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50A | V868A | nonsyn | gTa | gCa | 160 | 160 | 1 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50del | V868del | del | GTA | --- | 118 | 118 | 1 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50F | V868F | nonsyn | GtA | TtT | 8 | 6 | 0.75 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50F | V868F | nonsyn | GtA | TtC | 8 | 2 | 0.25 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50E | V868E | nonsyn | gTa | gAa | 7 | 6 | 0.857143 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50E | V868E | nonsyn | gTA | gAG | 7 | 1 | 0.142857 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50del1 | V868del1 | del | gtA | gt- | 6 | 6 | 1 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50Q | V868Q | nonsyn | GTa | CAa | 4 | 2 | 0.5 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50Q | V868Q | nonsyn | GTA | CAG | 4 | 2 | 0.5 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50G | V868G | nonsyn | gTa | gGa | 2 | 2 | 1 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50C | V868C | nonsyn | GTA | TGT | 1 | 1 | 1 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50X | V868X | nonsyn | GTa | TAa | 1 | 1 | 1 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50P | V868P | nonsyn | GTA | CCG | 1 | 1 | 1 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50del2 | V868del2 | del | GTa | --a | 1 | 1 | 1 | 2867-2869 |
ORF1ab/nsp3 | 50 | V50K | V868K | nonsyn | GTa | AAa | 1 | 1 | 1 | 2867-2869 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2380 | 2386 | All | 0.000455 |
ORF1ab/nsp3 | 50 | V50L | Gta | Cta | 4 | 2386 | All | 0.000001 |
ORF1ab/nsp3 | 50 | V50L | GtA | CtG | 1 | 2386 | All | 0 |
ORF1ab/nsp3 | 50 | V50L | GtA | TtG | 1 | 2386 | All | 0 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1694 | 1744 | All | 0.000324 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 46 | 1744 | All | 0.000009 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtC | 4 | 1744 | All | 0.000001 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1214 | 1214 | B.1.526 | 0.028534 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1213 | 1213 | B.1.1.277 | 0.920334 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 370 | 370 | B.1.2 | 0.003258 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 230 | 234 | All | 0.000044 |
ORF1ab/nsp3 | 50 | V50I | GtA | AtT | 2 | 234 | All | 0 |
ORF1ab/nsp3 | 50 | V50I | GtA | AtC | 2 | 234 | All | 0 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 162 | 162 | K.3 | 1 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 160 | 160 | All | 0.000031 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 118 | 118 | All | 0.000023 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 105 | 105 | AY.4 | 0.000163 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 94 | 94 | AY.34 | 0.009115 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 90 | 90 | B.1.575 | 0.027306 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 82 | 82 | B.1 | 0.000751 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 81 | 81 | AY.4 | 0.000126 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 78 | 78 | AY.29 | 0.00123 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 61 | 63 | B.1.1.519 | 0.002422 |
ORF1ab/nsp3 | 50 | V50L | Gta | Cta | 1 | 63 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 50 | V50L | GtA | CtG | 1 | 63 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 48 | 49 | B.1.1.7 | 0.000043 |
ORF1ab/nsp3 | 50 | V50L | Gta | Cta | 1 | 49 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 42 | 42 | K.1 | 1 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 41 | 41 | B.1 | 0.000376 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 38 | 38 | B.1.617.2 | 0.000143 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 37 | 37 | B.1.351 | 0.0011 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 22 | 35 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 13 | 35 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 28 | 28 | AY.103 | 0.000174 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 27 | 27 | B.1.478 | 0.317647 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 25 | 25 | K.2 | 1 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 22 | 23 | AY.43 | 0.000097 |
ORF1ab/nsp3 | 50 | V50L | Gta | Cta | 1 | 23 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 15 | 19 | AY.25 | 0.00009 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 3 | 19 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtC | 1 | 19 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 19 | 19 | B.1.1.311 | 0.006805 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 15 | 15 | AY.5 | 0.00031 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 14 | 14 | P.1 | 0.000221 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 12 | 12 | AY.30 | 0.004749 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 11 | 11 | AY.20 | 0.000428 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 11 | 11 | B.1.36.17 | 0.005435 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 8 | 9 | AY.5 | 0.000165 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 9 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 9 | 9 | AY.5.3 | 0.003036 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 50 | V50F | GtA | TtT | 6 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 50 | V50F | GtA | TtC | 2 | 8 | All | 0 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 7 | 8 | AY.117 | 0.000592 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 1 | 8 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 8 | 8 | AY.39.1 | 0.000317 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 8 | 8 | AZ.1 | 0.006938 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 8 | 8 | C.38 | 0.064516 |
ORF1ab/nsp3 | 50 | V50E | gTa | gAa | 6 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 50 | V50E | gTA | gAG | 1 | 7 | All | 0 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 6 | 7 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 1 | 7 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 6 | 7 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtC | 1 | 7 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 6 | 7 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 50 | V50L | Gta | Cta | 1 | 7 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 50 | V50del1 | gtA | gt- | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 6 | 6 | AY.67 | 0.002786 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 6 | 6 | AY.83 | 0.010345 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 6 | 6 | B.1.160.33 | 0.026549 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 5 | 5 | B.1.153 | 0.09434 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 5 | 5 | B.1.160.26 | 0.012107 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 5 | 5 | B.1.177.73 | 0.002831 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 5 | 5 | B.1.356 | 0.008636 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 5 | 5 | B.1.558 | 0.022831 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 4 | 5 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 1 | 5 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 5 | 5 | B.6 | 0.00455 |
ORF1ab/nsp3 | 50 | V50F | GtA | TtT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 50 | V50I | GtA | AtT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 50 | V50I | GtA | AtC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 50 | V50F | GtA | TtC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 50 | V50Q | GTa | CAa | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 50 | V50Q | GTA | CAG | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 2 | 4 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 2 | 4 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 3 | 3 | B.1.1.117 | 0.029126 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 3 | 3 | B.1.179 | 0.011278 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 50 | V50G | gTa | gGa | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 50 | V50del1 | gtA | gt- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | B.1.1.283 | 0.046512 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | B.1.1.431 | 0.032258 |
ORF1ab/nsp3 | 50 | V50Q | GTa | CAa | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 50 | V50E | gTa | gAa | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 50 | V50E | gTA | gAG | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 50 | V50Q | GTA | CAG | 1 | 2 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 50 | V50F | GtA | TtT | 2 | 2 | B.1.169 | 0.029851 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 50 | V50K | GTa | AAa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 50 | V50P | GTA | CCG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 50 | V50del2 | GTa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 50 | V50C | GTA | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 50 | V50X | GTa | TAa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 50 | V50Q | GTa | CAa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 50 | V50del2 | GTa | --a | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 50 | V50F | GtA | TtT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 50 | V50del1 | gtA | gt- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.1.169 | 0.018182 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 50 | V50E | gTa | gAa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 50 | V50L | GtA | TtG | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 50 | V50E | gTa | gAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 50 | V50K | GTa | AAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 50 | V50G | gTa | gGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 50 | V50F | GtA | TtT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 50 | V50E | gTa | gAa | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp3 | 50 | V50del1 | gtA | gt- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 50 | V50X | GTa | TAa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 50 | V50E | gTa | gAa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 50 | V50C | GTA | TGT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp3 | 50 | V50E | gTa | gAa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtC | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 50 | V50Q | GTA | CAG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 50 | V50del1 | gtA | gt- | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 50 | V50G | gTa | gGa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 50 | V50del1 | gtA | gt- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 50 | V50P | GTA | CCG | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | C.36.2 | 0.034483 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 50 | V50V | gtA | gtG | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 50 | V50L | Gta | Tta | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 50 | V50del | GTA | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 50 | V50A | gTa | gCa | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 50 | V50I | Gta | Ata | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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