CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 496 | A496V | A1314V | nonsyn | gCg | gTg | 9789 | 9777 | 0.998774 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496V | A1314V | nonsyn | gCG | gTC | 9789 | 7 | 0.000715088 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496V | A1314V | nonsyn | gCG | gTT | 9789 | 3 | 0.000306466 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496V | A1314V | nonsyn | gCG | gTA | 9789 | 2 | 0.000204311 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496A | A1314A | syn | gcG | gcT | 4711 | 4159 | 0.882827 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496A | A1314A | syn | gcG | gcA | 4711 | 455 | 0.0965825 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496A | A1314A | syn | gcG | gcC | 4711 | 97 | 0.0205901 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496T | A1314T | nonsyn | Gcg | Acg | 984 | 982 | 0.997967 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496T | A1314T | nonsyn | GcG | AcA | 984 | 1 | 0.00101626 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496T | A1314T | nonsyn | GcG | AcT | 984 | 1 | 0.00101626 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496S | A1314S | nonsyn | Gcg | Tcg | 333 | 332 | 0.996997 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496S | A1314S | nonsyn | GcG | TcA | 333 | 1 | 0.003003 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496E | A1314E | nonsyn | gCg | gAg | 33 | 33 | 1 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496del | A1314del | del | GCG | --- | 23 | 23 | 1 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496P | A1314P | nonsyn | Gcg | Ccg | 10 | 10 | 1 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496G | A1314G | nonsyn | gCg | gGg | 5 | 4 | 0.8 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496del1 | A1314del1 | del | gcG | gc- | 5 | 3 | 0.6 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496del1 | A1314del1 | del | Gcg | -cg | 5 | 1 | 0.2 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496del1 | A1314del1 | del | GcG | Ac- | 5 | 1 | 0.2 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496G | A1314G | nonsyn | gCG | gGA | 5 | 1 | 0.2 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496R | A1314R | nonsyn | GCG | AGA | 4 | 3 | 0.75 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496L | A1314L | nonsyn | GCG | TTA | 4 | 2 | 0.5 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496L | A1314L | nonsyn | GCG | CTA | 4 | 2 | 0.5 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496R | A1314R | nonsyn | GCg | AGg | 4 | 1 | 0.25 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496K | A1314K | nonsyn | GCg | AAg | 1 | 1 | 1 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496M | A1314M | nonsyn | GCg | ATg | 1 | 1 | 1 | 4205-4207 |
ORF1ab/nsp3 | 496 | A496del2 | A1314del2 | del | GCG | --A | 1 | 1 | 1 | 4205-4207 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 9777 | 9789 | All | 0.00187 |
ORF1ab/nsp3 | 496 | A496V | gCG | gTC | 7 | 9789 | All | 0.000001 |
ORF1ab/nsp3 | 496 | A496V | gCG | gTT | 3 | 9789 | All | 0.000001 |
ORF1ab/nsp3 | 496 | A496V | gCG | gTA | 2 | 9789 | All | 0 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 6959 | 6968 | B.1.1.7 | 0.00623 |
ORF1ab/nsp3 | 496 | A496V | gCG | gTC | 7 | 6968 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 496 | A496V | gCG | gTT | 2 | 6968 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4159 | 4711 | All | 0.000795 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 455 | 4711 | All | 0.000087 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 97 | 4711 | All | 0.000019 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 982 | 984 | All | 0.000188 |
ORF1ab/nsp3 | 496 | A496T | GcG | AcT | 1 | 984 | All | 0 |
ORF1ab/nsp3 | 496 | A496T | GcG | AcA | 1 | 984 | All | 0 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 708 | 821 | B.1.1.7 | 0.000634 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 107 | 821 | B.1.1.7 | 0.000096 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 6 | 821 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 618 | 625 | AY.4 | 0.000962 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 6 | 625 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 625 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 361 | 390 | B.1.617.2 | 0.001359 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 24 | 390 | B.1.617.2 | 0.00009 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 5 | 390 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 332 | 333 | All | 0.000063 |
ORF1ab/nsp3 | 496 | A496S | GcG | TcA | 1 | 333 | All | 0 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 326 | 326 | AY.103 | 0.002024 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 324 | 325 | AY.43 | 0.001435 |
ORF1ab/nsp3 | 496 | A496T | GcG | AcT | 1 | 325 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 260 | 260 | AY.4 | 0.000405 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 229 | 233 | AY.43 | 0.001015 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 2 | 233 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 233 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 207 | 207 | AY.3.1 | 0.017649 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 202 | 202 | AY.4.2 | 0.004381 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 178 | 178 | B.1.1.7 | 0.000159 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 174 | 174 | B.1.177 | 0.002291 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 172 | 172 | B.1.617.2 | 0.000648 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 167 | 167 | AY.4 | 0.00026 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 156 | 157 | AY.42 | 0.006276 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 157 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 150 | 150 | B.1.1.304 | 0.421348 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 136 | 140 | B.1.429 | 0.0032 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 4 | 140 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 134 | 134 | B.1.1.243 | 0.546939 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 121 | 121 | AY.25 | 0.000728 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 114 | 114 | B.1.2 | 0.001004 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 75 | 111 | AY.3 | 0.000746 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 22 | 111 | AY.3 | 0.000219 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 14 | 111 | AY.3 | 0.000139 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 111 | 111 | B.1.177.5 | 0.137888 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 85 | 105 | B.1.2 | 0.000748 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 18 | 105 | B.1.2 | 0.000158 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 2 | 105 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 96 | 96 | B.1.575 | 0.029126 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 80 | 87 | AY.102 | 0.002121 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 7 | 87 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 61 | 87 | B.1 | 0.000559 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 26 | 87 | B.1 | 0.000238 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 61 | 86 | AY.44 | 0.000371 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 24 | 86 | AY.44 | 0.000146 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 86 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 54 | 81 | AY.103 | 0.000335 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 20 | 81 | AY.103 | 0.000124 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 7 | 81 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 71 | 78 | AY.119 | 0.002507 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 7 | 78 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 71 | 75 | AY.25 | 0.000427 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 3 | 75 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 75 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 73 | 73 | AY.44 | 0.000444 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 70 | 70 | B.1.177.7 | 0.01154 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 61 | 61 | B.1.526 | 0.001434 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 59 | 59 | B.1.1 | 0.00107 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 55 | 55 | AY.73 | 0.036593 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 52 | 52 | AY.46.4 | 0.008554 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 52 | 52 | AY.98 | 0.004108 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 45 | 52 | P.1 | 0.000709 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 7 | 52 | P.1 | 0.00011 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 51 | 51 | AY.43 | 0.000226 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 49 | 49 | B.1 | 0.000449 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 43 | 44 | B.1.177.86 | 0.007888 |
ORF1ab/nsp3 | 496 | A496V | gCG | gTT | 1 | 44 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 31 | 40 | B.1.177 | 0.000408 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 5 | 40 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 4 | 40 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 39 | 39 | B.1.427 | 0.001969 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 33 | 33 | All | 0.000006 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 32 | 32 | AY.45 | 0.003894 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 25 | 31 | B.1.177.57 | 0.007024 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 31 | B.1.177.57 | 0.001686 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 29 | 29 | AY.114 | 0.006702 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 29 | 29 | B.1.369 | 0.008272 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 28 | 28 | B.1.1.13 | 1 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 28 | 28 | B.1.429 | 0.000659 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 24 | 26 | AY.20 | 0.000933 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 26 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 26 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 26 | 26 | Q.8 | 0.004288 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 26 | 26 | R.1 | 0.00234 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 25 | 25 | AY.36 | 0.003705 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 25 | 25 | B.1.36.22 | 0.030193 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 25 | 25 | B.1.517 | 0.010675 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 24 | 24 | AY.3 | 0.000239 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 24 | 24 | B.1.351 | 0.000713 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 23 | 23 | All | 0.000004 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 18 | 23 | B.1.1 | 0.000327 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 4 | 23 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 23 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 23 | 23 | P.1 | 0.000362 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 22 | 22 | AY.3 | 0.000219 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 20 | 22 | B.1.596 | 0.001743 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 22 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 21 | 21 | AY.39 | 0.000519 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 12 | 21 | AY.39 | 0.000297 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 8 | 21 | AY.39 | 0.000198 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 21 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 21 | 21 | B.1.177.81 | 0.003976 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 20 | 20 | AY.3.1 | 0.001705 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 20 | 20 | B.1.1.306 | 0.008768 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 20 | 20 | P.1 | 0.000315 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 19 | 19 | AY.117 | 0.001606 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 15 | 19 | AY.98.1 | 0.000726 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 4 | 19 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 18 | 18 | B.1.1.519 | 0.000715 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 15 | 18 | B.1.351 | 0.000446 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 3 | 18 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 18 | 18 | B.1.398 | 0.053571 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 18 | 18 | B.1.526 | 0.000423 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 17 | 17 | B.1.177.60 | 0.003713 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 17 | 17 | B.1.221 | 0.001208 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 16 | 16 | AY.29 | 0.000252 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 12 | 16 | B.1.36 | 0.001751 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 4 | 16 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 16 | 16 | Q.1 | 0.002021 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 15 | 15 | AY.103 | 0.000093 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 15 | 15 | AY.29 | 0.000237 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 14 | 14 | AY.20 | 0.000544 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 14 | 14 | B.1.1.214 | 0.000776 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 13 | 14 | B.1.243 | 0.000905 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 14 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 13 | 13 | AY.34 | 0.001261 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 13 | 13 | B | 0.001662 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 13 | 13 | C.39 | 0.245283 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 11 | 11 | AY.9.2 | 0.000404 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 11 | 11 | B.1.1.63 | 0.004244 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 11 | 11 | B.1.36 | 0.001605 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 11 | 11 | B.1.400 | 0.004719 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 11 | 11 | D.2 | 0.000825 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 10 | 10 | AE.8 | 0.00489 |
ORF1ab/nsp3 | 496 | A496P | Gcg | Ccg | 10 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 10 | 10 | AY.27 | 0.000647 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 10 | 10 | AY.46.2 | 0.006353 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 10 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 3 | 10 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 10 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 10 | 10 | B.1.1.372 | 0.006887 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 10 | 10 | B.1.369 | 0.002852 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 7 | 10 | B.1.427 | 0.000353 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 3 | 10 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 9 | 9 | A.2.5.1 | 0.043269 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 9 | 9 | AY.118 | 0.000564 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 9 | 9 | AY.14 | 0.000792 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 8 | 9 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 9 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 9 | 9 | AY.84 | 0.003937 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 9 | 9 | B.1.427 | 0.000454 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 9 | 9 | B.1.621.1 | 0.004552 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 8 | 8 | AY.105 | 0.005145 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 8 | AY.23 | 0.000418 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 8 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 8 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 8 | AY.26 | 0.000142 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 8 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 8 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 6 | 8 | B.1.1.306 | 0.00263 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 8 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 8 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 8 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 8 | 8 | B.1.428 | 0.008163 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 7 | 7 | AY.35 | 0.001631 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 7 | 7 | B.1.177.32 | 0.009447 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 6 | 6 | A.2 | 0.003971 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 6 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 6 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | B.1.1.434 | 0.002091 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 6 | 6 | C.37 | 0.000696 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp3 | 496 | A496G | gCg | gGg | 4 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 496 | A496del1 | gcG | gc- | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 496 | A496del1 | Gcg | -cg | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 496 | A496G | gCG | gGA | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 496 | A496del1 | GcG | Ac- | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 5 | 5 | AY.107 | 0.00233 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 5 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 5 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 5 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 5 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 5 | AY.53 | 0.001438 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 5 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 5 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 4 | 5 | B | 0.000511 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 5 | B | 0.000128 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 5 | 5 | B.1.1.50 | 0.003394 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 3 | 5 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 5 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 5 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 5 | B.1.241 | 0.004058 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 5 | 5 | B.1.456 | 0.01634 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 5 | 5 | B.1.627 | 0.010101 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 5 | 5 | B.1.637 | 0.000365 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 3 | 4 | 0.166667 | |
ORF1ab/nsp3 | 496 | A496R | GCG | AGA | 3 | 4 | 0.166667 | |
ORF1ab/nsp3 | 496 | A496L | GCG | TTA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 496 | A496L | GCG | CTA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 496 | A496R | GCg | AGg | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 496 | A496T | GcG | AcA | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 4 | A.2 | 0.001985 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 4 | A.2 | 0.000662 |
ORF1ab/nsp3 | 496 | A496R | GCG | AGA | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 496 | A496L | GCG | CTA | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 496 | A496L | GCG | TTA | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 496 | A496R | GCg | AGg | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 3 | 4 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 4 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 2 | 4 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 4 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 4 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 4 | AY.91 | 0.002191 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 4 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 496 | A496S | GcG | TcA | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 4 | B.1.1.1 | 0.00098 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 4 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 4 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 4 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 4 | 4 | B.1.1.291 | 0.00297 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 4 | 4 | B.1.1.487 | 0.022346 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4 | 4 | B.1.1.526 | 0.014184 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 4 | 4 | B.1.177.18 | 0.00464 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 4 | 4 | B.1.177.50 | 0.018779 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 4 | 4 | B.1.44 | 0.033333 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 4 | 4 | B.1.571 | 0.038835 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 3 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 3 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 3 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 3 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 3 | AY.90 | 0.001369 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 3 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 3 | B.1.1.291 | 0.001485 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 3 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | B.1.1.315 | 0.025424 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.1.416 | 0.002715 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | B.1.128 | 0.001906 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 3 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 3 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.177.69 | 0.004451 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 3 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 3 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.177.84 | 0.02 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | B.1.22 | 0.003953 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 3 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 3 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.258.14 | 0.002941 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.36.38 | 0.004926 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | B.1.416.1 | 0.004687 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 3 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 3 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | B.1.78 | 0.025641 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 496 | A496V | gCG | gTA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 496 | A496G | gCg | gGg | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 496 | A496G | gCG | gGA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | A.28 | 0.005291 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 2 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 2 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 2 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 2 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.1.128 | 0.014184 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 2 | 2 | B.1.1.210 | 0.011429 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.1.337 | 0.007194 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.1.356 | 0.017094 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 2 | 2 | B.1.1.462 | 0.017241 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.1.517 | 0.013605 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp3 | 496 | A496del1 | gcG | gc- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 496 | A496del1 | Gcg | -cg | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.117 | 0.025 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.177.62 | 0.002384 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.258.4 | 0.006897 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | B.1.273 | 0.025974 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.466 | 0.046512 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | B.1.505 | 0.008772 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 2 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 496 | A496P | Gcg | Ccg | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | B.1.537 | 0.04 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.546 | 0.007407 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcC | 1 | 2 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 2 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | B.1.8 | 0.003945 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | B.35 | 0.015625 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | C.27 | 0.037037 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 2 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 2 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 496 | A496del2 | GCG | --A | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 496 | A496K | GCg | AAg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 496 | A496M | GCg | ATg | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 496 | A496del1 | gcG | gc- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 496 | A496K | GCg | AAg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 496 | A496G | gCg | gGg | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 496 | A496del2 | GCG | --A | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 496 | A496P | Gcg | Ccg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 496 | A496del1 | GcG | Ac- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 496 | A496P | Gcg | Ccg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.257 | 0.009709 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.350 | 0.04 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.1.452 | 0.111111 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 496 | A496P | Gcg | Ccg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 496 | A496M | GCg | ATg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | B.1.127 | 0.002198 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 496 | A496P | Gcg | Ccg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 496 | A496P | Gcg | Ccg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.302 | 0.013333 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 496 | A496G | gCg | gGg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | B.1.383 | 0.009009 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.40 | 0.019608 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 496 | A496G | gCg | gGg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.498 | 0.020408 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 496 | A496P | Gcg | Ccg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.572 | 0.025 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | B.1.601 | 0.030303 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 496 | A496del1 | gcG | gc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 496 | A496P | Gcg | Ccg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | B.4.7 | 0.010101 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 496 | A496P | Gcg | Ccg | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 496 | A496E | gCg | gAg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp3 | 496 | A496T | Gcg | Acg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 496 | A496S | Gcg | Tcg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 496 | A496V | gCg | gTg | 1 | 1 | Q.5 | 0.016949 |
ORF1ab/nsp3 | 496 | A496A | gcG | gcT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 496 | A496del | GCG | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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