CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 496

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	496	A496V	A1314V	nonsyn	gCg	gTg	9789	9777	0.998774	4205-4207
ORF1ab/nsp3	496	A496V	A1314V	nonsyn	gCG	gTC	9789	7	0.000715088	4205-4207
ORF1ab/nsp3	496	A496V	A1314V	nonsyn	gCG	gTT	9789	3	0.000306466	4205-4207
ORF1ab/nsp3	496	A496V	A1314V	nonsyn	gCG	gTA	9789	2	0.000204311	4205-4207
ORF1ab/nsp3	496	A496A	A1314A	syn	gcG	gcT	4711	4159	0.882827	4205-4207
ORF1ab/nsp3	496	A496A	A1314A	syn	gcG	gcA	4711	455	0.0965825	4205-4207
ORF1ab/nsp3	496	A496A	A1314A	syn	gcG	gcC	4711	97	0.0205901	4205-4207
ORF1ab/nsp3	496	A496T	A1314T	nonsyn	Gcg	Acg	984	982	0.997967	4205-4207
ORF1ab/nsp3	496	A496T	A1314T	nonsyn	GcG	AcA	984	1	0.00101626	4205-4207
ORF1ab/nsp3	496	A496T	A1314T	nonsyn	GcG	AcT	984	1	0.00101626	4205-4207
ORF1ab/nsp3	496	A496S	A1314S	nonsyn	Gcg	Tcg	333	332	0.996997	4205-4207
ORF1ab/nsp3	496	A496S	A1314S	nonsyn	GcG	TcA	333	1	0.003003	4205-4207
ORF1ab/nsp3	496	A496E	A1314E	nonsyn	gCg	gAg	33	33	1	4205-4207
ORF1ab/nsp3	496	A496del	A1314del	del	GCG	---	23	23	1	4205-4207
ORF1ab/nsp3	496	A496P	A1314P	nonsyn	Gcg	Ccg	10	10	1	4205-4207
ORF1ab/nsp3	496	A496G	A1314G	nonsyn	gCg	gGg	5	4	0.8	4205-4207
ORF1ab/nsp3	496	A496del1	A1314del1	del	gcG	gc-	5	3	0.6	4205-4207
ORF1ab/nsp3	496	A496del1	A1314del1	del	Gcg	-cg	5	1	0.2	4205-4207
ORF1ab/nsp3	496	A496del1	A1314del1	del	GcG	Ac-	5	1	0.2	4205-4207
ORF1ab/nsp3	496	A496G	A1314G	nonsyn	gCG	gGA	5	1	0.2	4205-4207
ORF1ab/nsp3	496	A496R	A1314R	nonsyn	GCG	AGA	4	3	0.75	4205-4207
ORF1ab/nsp3	496	A496L	A1314L	nonsyn	GCG	TTA	4	2	0.5	4205-4207
ORF1ab/nsp3	496	A496L	A1314L	nonsyn	GCG	CTA	4	2	0.5	4205-4207
ORF1ab/nsp3	496	A496R	A1314R	nonsyn	GCg	AGg	4	1	0.25	4205-4207
ORF1ab/nsp3	496	A496K	A1314K	nonsyn	GCg	AAg	1	1	1	4205-4207
ORF1ab/nsp3	496	A496M	A1314M	nonsyn	GCg	ATg	1	1	1	4205-4207
ORF1ab/nsp3	496	A496del2	A1314del2	del	GCG	--A	1	1	1	4205-4207

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	496	A496V	gCg	gTg	9777	9789	All	0.00187
ORF1ab/nsp3	496	A496V	gCG	gTC	7	9789	All	0.000001
ORF1ab/nsp3	496	A496V	gCG	gTT	3	9789	All	0.000001
ORF1ab/nsp3	496	A496V	gCG	gTA	2	9789	All	0
ORF1ab/nsp3	496	A496V	gCg	gTg	6959	6968	B.1.1.7	0.00623
ORF1ab/nsp3	496	A496V	gCG	gTC	7	6968	B.1.1.7	0.000006
ORF1ab/nsp3	496	A496V	gCG	gTT	2	6968	B.1.1.7	0.000002
ORF1ab/nsp3	496	A496A	gcG	gcT	4159	4711	All	0.000795
ORF1ab/nsp3	496	A496A	gcG	gcA	455	4711	All	0.000087
ORF1ab/nsp3	496	A496A	gcG	gcC	97	4711	All	0.000019
ORF1ab/nsp3	496	A496T	Gcg	Acg	982	984	All	0.000188
ORF1ab/nsp3	496	A496T	GcG	AcT	1	984	All	0
ORF1ab/nsp3	496	A496T	GcG	AcA	1	984	All	0
ORF1ab/nsp3	496	A496A	gcG	gcT	708	821	B.1.1.7	0.000634
ORF1ab/nsp3	496	A496A	gcG	gcA	107	821	B.1.1.7	0.000096
ORF1ab/nsp3	496	A496A	gcG	gcC	6	821	B.1.1.7	0.000005
ORF1ab/nsp3	496	A496A	gcG	gcT	618	625	AY.4	0.000962
ORF1ab/nsp3	496	A496A	gcG	gcA	6	625	AY.4	0.000009
ORF1ab/nsp3	496	A496A	gcG	gcC	1	625	AY.4	0.000002
ORF1ab/nsp3	496	A496A	gcG	gcT	361	390	B.1.617.2	0.001359
ORF1ab/nsp3	496	A496A	gcG	gcA	24	390	B.1.617.2	0.00009
ORF1ab/nsp3	496	A496A	gcG	gcC	5	390	B.1.617.2	0.000019
ORF1ab/nsp3	496	A496S	Gcg	Tcg	332	333	All	0.000063
ORF1ab/nsp3	496	A496S	GcG	TcA	1	333	All	0
ORF1ab/nsp3	496	A496V	gCg	gTg	326	326	AY.103	0.002024
ORF1ab/nsp3	496	A496T	Gcg	Acg	324	325	AY.43	0.001435
ORF1ab/nsp3	496	A496T	GcG	AcT	1	325	AY.43	0.000004
ORF1ab/nsp3	496	A496V	gCg	gTg	260	260	AY.4	0.000405
ORF1ab/nsp3	496	A496A	gcG	gcT	229	233	AY.43	0.001015
ORF1ab/nsp3	496	A496A	gcG	gcC	2	233	AY.43	0.000009
ORF1ab/nsp3	496	A496A	gcG	gcA	2	233	AY.43	0.000009
ORF1ab/nsp3	496	A496V	gCg	gTg	207	207	AY.3.1	0.017649
ORF1ab/nsp3	496	A496V	gCg	gTg	202	202	AY.4.2	0.004381
ORF1ab/nsp3	496	A496T	Gcg	Acg	178	178	B.1.1.7	0.000159
ORF1ab/nsp3	496	A496V	gCg	gTg	174	174	B.1.177	0.002291
ORF1ab/nsp3	496	A496V	gCg	gTg	172	172	B.1.617.2	0.000648
ORF1ab/nsp3	496	A496S	Gcg	Tcg	167	167	AY.4	0.00026
ORF1ab/nsp3	496	A496A	gcG	gcT	156	157	AY.42	0.006276
ORF1ab/nsp3	496	A496A	gcG	gcC	1	157	AY.42	0.00004
ORF1ab/nsp3	496	A496A	gcG	gcT	150	150	B.1.1.304	0.421348
ORF1ab/nsp3	496	A496A	gcG	gcT	136	140	B.1.429	0.0032
ORF1ab/nsp3	496	A496A	gcG	gcA	4	140	B.1.429	0.000094
ORF1ab/nsp3	496	A496A	gcG	gcT	134	134	B.1.1.243	0.546939
ORF1ab/nsp3	496	A496V	gCg	gTg	121	121	AY.25	0.000728
ORF1ab/nsp3	496	A496V	gCg	gTg	114	114	B.1.2	0.001004
ORF1ab/nsp3	496	A496A	gcG	gcT	75	111	AY.3	0.000746
ORF1ab/nsp3	496	A496A	gcG	gcA	22	111	AY.3	0.000219
ORF1ab/nsp3	496	A496A	gcG	gcC	14	111	AY.3	0.000139
ORF1ab/nsp3	496	A496A	gcG	gcT	111	111	B.1.177.5	0.137888
ORF1ab/nsp3	496	A496A	gcG	gcT	85	105	B.1.2	0.000748
ORF1ab/nsp3	496	A496A	gcG	gcA	18	105	B.1.2	0.000158
ORF1ab/nsp3	496	A496A	gcG	gcC	2	105	B.1.2	0.000018
ORF1ab/nsp3	496	A496T	Gcg	Acg	96	96	B.1.575	0.029126
ORF1ab/nsp3	496	A496A	gcG	gcT	80	87	AY.102	0.002121
ORF1ab/nsp3	496	A496A	gcG	gcA	7	87	AY.102	0.000186
ORF1ab/nsp3	496	A496A	gcG	gcT	61	87	B.1	0.000559
ORF1ab/nsp3	496	A496A	gcG	gcA	26	87	B.1	0.000238
ORF1ab/nsp3	496	A496A	gcG	gcT	61	86	AY.44	0.000371
ORF1ab/nsp3	496	A496A	gcG	gcA	24	86	AY.44	0.000146
ORF1ab/nsp3	496	A496A	gcG	gcC	1	86	AY.44	0.000006
ORF1ab/nsp3	496	A496A	gcG	gcT	54	81	AY.103	0.000335
ORF1ab/nsp3	496	A496A	gcG	gcA	20	81	AY.103	0.000124
ORF1ab/nsp3	496	A496A	gcG	gcC	7	81	AY.103	0.000043
ORF1ab/nsp3	496	A496A	gcG	gcT	71	78	AY.119	0.002507
ORF1ab/nsp3	496	A496A	gcG	gcA	7	78	AY.119	0.000247
ORF1ab/nsp3	496	A496A	gcG	gcT	71	75	AY.25	0.000427
ORF1ab/nsp3	496	A496A	gcG	gcA	3	75	AY.25	0.000018
ORF1ab/nsp3	496	A496A	gcG	gcC	1	75	AY.25	0.000006
ORF1ab/nsp3	496	A496V	gCg	gTg	73	73	AY.44	0.000444
ORF1ab/nsp3	496	A496V	gCg	gTg	70	70	B.1.177.7	0.01154
ORF1ab/nsp3	496	A496V	gCg	gTg	61	61	B.1.526	0.001434
ORF1ab/nsp3	496	A496V	gCg	gTg	59	59	B.1.1	0.00107
ORF1ab/nsp3	496	A496A	gcG	gcT	55	55	AY.73	0.036593
ORF1ab/nsp3	496	A496A	gcG	gcT	52	52	AY.46.4	0.008554
ORF1ab/nsp3	496	A496A	gcG	gcT	52	52	AY.98	0.004108
ORF1ab/nsp3	496	A496A	gcG	gcT	45	52	P.1	0.000709
ORF1ab/nsp3	496	A496A	gcG	gcA	7	52	P.1	0.00011
ORF1ab/nsp3	496	A496V	gCg	gTg	51	51	AY.43	0.000226
ORF1ab/nsp3	496	A496V	gCg	gTg	49	49	B.1	0.000449
ORF1ab/nsp3	496	A496V	gCg	gTg	43	44	B.1.177.86	0.007888
ORF1ab/nsp3	496	A496V	gCG	gTT	1	44	B.1.177.86	0.000183
ORF1ab/nsp3	496	A496T	Gcg	Acg	41	41	AY.4	0.000064
ORF1ab/nsp3	496	A496A	gcG	gcT	31	40	B.1.177	0.000408
ORF1ab/nsp3	496	A496A	gcG	gcA	5	40	B.1.177	0.000066
ORF1ab/nsp3	496	A496A	gcG	gcC	4	40	B.1.177	0.000053
ORF1ab/nsp3	496	A496T	Gcg	Acg	39	39	B.1.427	0.001969
ORF1ab/nsp3	496	A496E	gCg	gAg	33	33	All	0.000006
ORF1ab/nsp3	496	A496A	gcG	gcT	32	32	AY.45	0.003894
ORF1ab/nsp3	496	A496A	gcG	gcA	25	31	B.1.177.57	0.007024
ORF1ab/nsp3	496	A496A	gcG	gcT	6	31	B.1.177.57	0.001686
ORF1ab/nsp3	496	A496A	gcG	gcT	29	29	AY.114	0.006702
ORF1ab/nsp3	496	A496V	gCg	gTg	29	29	B.1.369	0.008272
ORF1ab/nsp3	496	A496A	gcG	gcT	28	28	B.1.1.13	1
ORF1ab/nsp3	496	A496S	Gcg	Tcg	28	28	B.1.429	0.000659
ORF1ab/nsp3	496	A496A	gcG	gcT	24	26	AY.20	0.000933
ORF1ab/nsp3	496	A496A	gcG	gcA	1	26	AY.20	0.000039
ORF1ab/nsp3	496	A496A	gcG	gcC	1	26	AY.20	0.000039
ORF1ab/nsp3	496	A496V	gCg	gTg	26	26	Q.8	0.004288
ORF1ab/nsp3	496	A496V	gCg	gTg	26	26	R.1	0.00234
ORF1ab/nsp3	496	A496A	gcG	gcT	25	25	AY.36	0.003705
ORF1ab/nsp3	496	A496A	gcG	gcT	25	25	B.1.36.22	0.030193
ORF1ab/nsp3	496	A496V	gCg	gTg	25	25	B.1.517	0.010675
ORF1ab/nsp3	496	A496V	gCg	gTg	24	24	AY.3	0.000239
ORF1ab/nsp3	496	A496V	gCg	gTg	24	24	B.1.351	0.000713
ORF1ab/nsp3	496	A496del	GCG	---	23	23	All	0.000004
ORF1ab/nsp3	496	A496A	gcG	gcT	18	23	B.1.1	0.000327
ORF1ab/nsp3	496	A496A	gcG	gcA	4	23	B.1.1	0.000073
ORF1ab/nsp3	496	A496A	gcG	gcC	1	23	B.1.1	0.000018
ORF1ab/nsp3	496	A496T	Gcg	Acg	23	23	P.1	0.000362
ORF1ab/nsp3	496	A496T	Gcg	Acg	22	22	AY.3	0.000219
ORF1ab/nsp3	496	A496A	gcG	gcC	20	22	B.1.596	0.001743
ORF1ab/nsp3	496	A496A	gcG	gcT	2	22	B.1.596	0.000174
ORF1ab/nsp3	496	A496V	gCg	gTg	21	21	AY.39	0.000519
ORF1ab/nsp3	496	A496A	gcG	gcT	12	21	AY.39	0.000297
ORF1ab/nsp3	496	A496A	gcG	gcA	8	21	AY.39	0.000198
ORF1ab/nsp3	496	A496A	gcG	gcC	1	21	AY.39	0.000025
ORF1ab/nsp3	496	A496A	gcG	gcT	21	21	B.1.177.81	0.003976
ORF1ab/nsp3	496	A496T	Gcg	Acg	20	20	AY.3.1	0.001705
ORF1ab/nsp3	496	A496T	Gcg	Acg	20	20	B.1.1.306	0.008768
ORF1ab/nsp3	496	A496V	gCg	gTg	20	20	B.1.429	0.000471
ORF1ab/nsp3	496	A496V	gCg	gTg	20	20	P.1	0.000315
ORF1ab/nsp3	496	A496V	gCg	gTg	19	19	AY.117	0.001606
ORF1ab/nsp3	496	A496A	gcG	gcT	15	19	AY.98.1	0.000726
ORF1ab/nsp3	496	A496A	gcG	gcA	4	19	AY.98.1	0.000194
ORF1ab/nsp3	496	A496V	gCg	gTg	18	18	B.1.1.519	0.000715
ORF1ab/nsp3	496	A496A	gcG	gcT	15	18	B.1.351	0.000446
ORF1ab/nsp3	496	A496A	gcG	gcA	3	18	B.1.351	0.000089
ORF1ab/nsp3	496	A496V	gCg	gTg	18	18	B.1.398	0.053571
ORF1ab/nsp3	496	A496A	gcG	gcT	18	18	B.1.526	0.000423
ORF1ab/nsp3	496	A496S	Gcg	Tcg	17	17	B.1.1.7	0.000015
ORF1ab/nsp3	496	A496S	Gcg	Tcg	17	17	B.1.177.60	0.003713
ORF1ab/nsp3	496	A496V	gCg	gTg	17	17	B.1.221	0.001208
ORF1ab/nsp3	496	A496A	gcG	gcT	16	16	AY.29	0.000252
ORF1ab/nsp3	496	A496S	Gcg	Tcg	16	16	AY.44	0.000097
ORF1ab/nsp3	496	A496E	gCg	gAg	16	16	B.1.1.7	0.000014
ORF1ab/nsp3	496	A496A	gcG	gcT	12	16	B.1.36	0.001751
ORF1ab/nsp3	496	A496A	gcG	gcA	4	16	B.1.36	0.000584
ORF1ab/nsp3	496	A496V	gCg	gTg	16	16	Q.1	0.002021
ORF1ab/nsp3	496	A496V	gCg	gTg	15	15	AY.102	0.000398
ORF1ab/nsp3	496	A496T	Gcg	Acg	15	15	AY.103	0.000093
ORF1ab/nsp3	496	A496V	gCg	gTg	15	15	AY.29	0.000237
ORF1ab/nsp3	496	A496V	gCg	gTg	14	14	AY.20	0.000544
ORF1ab/nsp3	496	A496V	gCg	gTg	14	14	B.1.1.214	0.000776
ORF1ab/nsp3	496	A496A	gcG	gcT	13	14	B.1.243	0.000905
ORF1ab/nsp3	496	A496A	gcG	gcC	1	14	B.1.243	0.00007
ORF1ab/nsp3	496	A496A	gcG	gcT	13	13	AY.34	0.001261
ORF1ab/nsp3	496	A496S	Gcg	Tcg	13	13	B	0.001662
ORF1ab/nsp3	496	A496V	gCg	gTg	13	13	C.39	0.245283
ORF1ab/nsp3	496	A496A	gcG	gcT	12	12	AY.5	0.000248
ORF1ab/nsp3	496	A496V	gCg	gTg	12	12	B.1.258	0.000799
ORF1ab/nsp3	496	A496T	Gcg	Acg	12	12	B.1.617.2	0.000045
ORF1ab/nsp3	496	A496S	Gcg	Tcg	12	12	B.1.617.2	0.000045
ORF1ab/nsp3	496	A496T	Gcg	Acg	11	11	AY.39	0.000272
ORF1ab/nsp3	496	A496T	Gcg	Acg	11	11	AY.9.2	0.000404
ORF1ab/nsp3	496	A496T	Gcg	Acg	11	11	B.1.1.63	0.004244
ORF1ab/nsp3	496	A496V	gCg	gTg	11	11	B.1.36	0.001605
ORF1ab/nsp3	496	A496V	gCg	gTg	11	11	B.1.400	0.004719
ORF1ab/nsp3	496	A496V	gCg	gTg	11	11	D.2	0.000825
ORF1ab/nsp3	496	A496V	gCg	gTg	10	10	AE.8	0.00489
ORF1ab/nsp3	496	A496P	Gcg	Ccg	10	10	All	0.000002
ORF1ab/nsp3	496	A496T	Gcg	Acg	10	10	AY.102	0.000265
ORF1ab/nsp3	496	A496A	gcG	gcA	10	10	AY.27	0.000647
ORF1ab/nsp3	496	A496T	Gcg	Acg	10	10	AY.44	0.000061
ORF1ab/nsp3	496	A496A	gcG	gcT	10	10	AY.46.2	0.006353
ORF1ab/nsp3	496	A496V	gCg	gTg	10	10	AY.5	0.000206
ORF1ab/nsp3	496	A496A	gcG	gcT	5	10	AY.61	0.000524
ORF1ab/nsp3	496	A496A	gcG	gcC	3	10	AY.61	0.000314
ORF1ab/nsp3	496	A496A	gcG	gcA	2	10	AY.61	0.00021
ORF1ab/nsp3	496	A496A	gcG	gcT	10	10	B.1.1.372	0.006887
ORF1ab/nsp3	496	A496T	Gcg	Acg	10	10	B.1.160	0.000312
ORF1ab/nsp3	496	A496A	gcG	gcT	10	10	B.1.369	0.002852
ORF1ab/nsp3	496	A496A	gcG	gcT	7	10	B.1.427	0.000353
ORF1ab/nsp3	496	A496A	gcG	gcA	3	10	B.1.427	0.000151
ORF1ab/nsp3	496	A496A	gcG	gcT	9	9	A.2.5.1	0.043269
ORF1ab/nsp3	496	A496A	gcG	gcT	9	9	AY.118	0.000564
ORF1ab/nsp3	496	A496A	gcG	gcT	9	9	AY.14	0.000792
ORF1ab/nsp3	496	A496A	gcG	gcT	8	9	AY.33	0.000534
ORF1ab/nsp3	496	A496A	gcG	gcC	1	9	AY.33	0.000067
ORF1ab/nsp3	496	A496V	gCg	gTg	9	9	AY.84	0.003937
ORF1ab/nsp3	496	A496V	gCg	gTg	9	9	B.1.427	0.000454
ORF1ab/nsp3	496	A496A	gcG	gcA	9	9	B.1.621.1	0.004552
ORF1ab/nsp3	496	A496V	gCg	gTg	8	8	AY.105	0.005145
ORF1ab/nsp3	496	A496A	gcG	gcT	6	8	AY.23	0.000418
ORF1ab/nsp3	496	A496A	gcG	gcA	1	8	AY.23	0.00007
ORF1ab/nsp3	496	A496A	gcG	gcC	1	8	AY.23	0.00007
ORF1ab/nsp3	496	A496A	gcG	gcT	5	8	AY.26	0.000142
ORF1ab/nsp3	496	A496A	gcG	gcA	2	8	AY.26	0.000057
ORF1ab/nsp3	496	A496A	gcG	gcC	1	8	AY.26	0.000028
ORF1ab/nsp3	496	A496A	gcG	gcC	6	8	B.1.1.306	0.00263
ORF1ab/nsp3	496	A496A	gcG	gcT	2	8	B.1.1.306	0.000877
ORF1ab/nsp3	496	A496A	gcG	gcT	6	8	B.1.1.519	0.000238
ORF1ab/nsp3	496	A496A	gcG	gcA	2	8	B.1.1.519	0.000079
ORF1ab/nsp3	496	A496V	gCg	gTg	8	8	B.1.160	0.00025
ORF1ab/nsp3	496	A496V	gCg	gTg	8	8	B.1.243	0.000557
ORF1ab/nsp3	496	A496A	gcG	gcT	8	8	B.1.428	0.008163
ORF1ab/nsp3	496	A496V	gCg	gTg	8	8	B.1.525	0.000905
ORF1ab/nsp3	496	A496A	gcG	gcT	7	7	AY.117	0.000592
ORF1ab/nsp3	496	A496T	Gcg	Acg	7	7	AY.25	0.000042
ORF1ab/nsp3	496	A496V	gCg	gTg	7	7	AY.35	0.001631
ORF1ab/nsp3	496	A496T	Gcg	Acg	7	7	B.1	0.000064
ORF1ab/nsp3	496	A496A	gcG	gcT	7	7	B.1.177.32	0.009447
ORF1ab/nsp3	496	A496V	gCg	gTg	7	7	B.1.36.29	0.003621
ORF1ab/nsp3	496	A496A	gcG	gcT	7	7	B.1.628	0.002467
ORF1ab/nsp3	496	A496V	gCg	gTg	7	7	C.37	0.000812
ORF1ab/nsp3	496	A496A	gcG	gcT	7	7	C.37	0.000812
ORF1ab/nsp3	496	A496S	Gcg	Tcg	7	7	P.1.14	0.000335
ORF1ab/nsp3	496	A496V	gCg	gTg	6	6	A.2	0.003971
ORF1ab/nsp3	496	A496T	Gcg	Acg	6	6	AY.26	0.00017
ORF1ab/nsp3	496	A496A	gcG	gcT	6	6	AY.4.2	0.00013
ORF1ab/nsp3	496	A496A	gcG	gcT	5	6	AY.46	0.00052
ORF1ab/nsp3	496	A496A	gcG	gcA	1	6	AY.46	0.000104
ORF1ab/nsp3	496	A496A	gcG	gcT	6	6	AY.6	0.000247
ORF1ab/nsp3	496	A496V	gCg	gTg	6	6	AY.61	0.000629
ORF1ab/nsp3	496	A496A	gcG	gcT	6	6	AY.9.1	0.000502
ORF1ab/nsp3	496	A496A	gcG	gcT	6	6	AY.9.2	0.00022
ORF1ab/nsp3	496	A496V	gCg	gTg	6	6	AY.99.2	0.000553
ORF1ab/nsp3	496	A496T	Gcg	Acg	6	6	B.1.1	0.000109
ORF1ab/nsp3	496	A496A	gcG	gcT	6	6	B.1.1.434	0.002091
ORF1ab/nsp3	496	A496T	Gcg	Acg	6	6	B.1.2	0.000053
ORF1ab/nsp3	496	A496A	gcG	gcA	6	6	B.1.234	0.000792
ORF1ab/nsp3	496	A496A	gcG	gcT	6	6	B.1.258	0.000399
ORF1ab/nsp3	496	A496S	Gcg	Tcg	6	6	C.37	0.000696
ORF1ab/nsp3	496	A496A	gcG	gcT	6	6	P.1.17	0.000971
ORF1ab/nsp3	496	A496V	gCg	gTg	6	6	P.1.17	0.000971
ORF1ab/nsp3	496	A496A	gcG	gcT	6	6	P.2	0.00112
ORF1ab/nsp3	496	A496G	gCg	gGg	4	5	All	0.000001
ORF1ab/nsp3	496	A496del1	gcG	gc-	3	5	All	0.000001
ORF1ab/nsp3	496	A496del1	Gcg	-cg	1	5	All	0
ORF1ab/nsp3	496	A496G	gCG	gGA	1	5	All	0
ORF1ab/nsp3	496	A496del1	GcG	Ac-	1	5	All	0
ORF1ab/nsp3	496	A496S	Gcg	Tcg	5	5	AY.103	0.000031
ORF1ab/nsp3	496	A496E	gCg	gAg	5	5	AY.107	0.00233
ORF1ab/nsp3	496	A496V	gCg	gTg	5	5	AY.119	0.000177
ORF1ab/nsp3	496	A496A	gcG	gcT	3	5	AY.120	0.000112
ORF1ab/nsp3	496	A496A	gcG	gcA	2	5	AY.120	0.000074
ORF1ab/nsp3	496	A496T	Gcg	Acg	5	5	AY.16	0.001898
ORF1ab/nsp3	496	A496V	gCg	gTg	5	5	AY.47	0.000156
ORF1ab/nsp3	496	A496A	gcG	gcT	3	5	AY.47	0.000093
ORF1ab/nsp3	496	A496A	gcG	gcA	2	5	AY.47	0.000062
ORF1ab/nsp3	496	A496A	gcG	gcT	5	5	AY.53	0.001438
ORF1ab/nsp3	496	A496A	gcG	gcT	3	5	AY.75	0.000168
ORF1ab/nsp3	496	A496A	gcG	gcA	2	5	AY.75	0.000112
ORF1ab/nsp3	496	A496A	gcG	gcA	4	5	B	0.000511
ORF1ab/nsp3	496	A496A	gcG	gcT	1	5	B	0.000128
ORF1ab/nsp3	496	A496A	gcG	gcT	5	5	B.1.1.222	0.00102
ORF1ab/nsp3	496	A496V	gCg	gTg	5	5	B.1.1.50	0.003394
ORF1ab/nsp3	496	A496A	gcG	gcA	3	5	B.1.160	0.000094
ORF1ab/nsp3	496	A496A	gcG	gcT	1	5	B.1.160	0.000031
ORF1ab/nsp3	496	A496A	gcG	gcC	1	5	B.1.160	0.000031
ORF1ab/nsp3	496	A496V	gCg	gTg	5	5	B.1.240	0.001078
ORF1ab/nsp3	496	A496A	gcG	gcT	5	5	B.1.241	0.004058
ORF1ab/nsp3	496	A496T	Gcg	Acg	5	5	B.1.351	0.000149
ORF1ab/nsp3	496	A496V	gCg	gTg	5	5	B.1.456	0.01634
ORF1ab/nsp3	496	A496V	gCg	gTg	5	5	B.1.627	0.010101
ORF1ab/nsp3	496	A496V	gCg	gTg	5	5	B.1.637	0.000365
ORF1ab/nsp3	496	A496A	gcG	gcT	5	5	P.1.14	0.000239
ORF1ab/nsp3	496	A496T	Gcg	Acg	3	4		0.166667
ORF1ab/nsp3	496	A496R	GCG	AGA	3	4		0.166667
ORF1ab/nsp3	496	A496L	GCG	TTA	2	4		0.111111
ORF1ab/nsp3	496	A496L	GCG	CTA	2	4		0.111111
ORF1ab/nsp3	496	A496R	GCg	AGg	1	4		0.055556
ORF1ab/nsp3	496	A496T	GcG	AcA	1	4		0.055556
ORF1ab/nsp3	496	A496A	gcG	gcT	3	4	A.2	0.001985
ORF1ab/nsp3	496	A496A	gcG	gcC	1	4	A.2	0.000662
ORF1ab/nsp3	496	A496R	GCG	AGA	3	4	All	0.000001
ORF1ab/nsp3	496	A496L	GCG	CTA	2	4	All	0
ORF1ab/nsp3	496	A496L	GCG	TTA	2	4	All	0
ORF1ab/nsp3	496	A496R	GCg	AGg	1	4	All	0
ORF1ab/nsp3	496	A496A	gcG	gcC	3	4	AY.100	0.000138
ORF1ab/nsp3	496	A496A	gcG	gcT	1	4	AY.100	0.000046
ORF1ab/nsp3	496	A496A	gcG	gcC	4	4	AY.101	0.001962
ORF1ab/nsp3	496	A496T	Gcg	Acg	4	4	AY.29	0.000063
ORF1ab/nsp3	496	A496A	gcG	gcT	4	4	AY.29.1	0.000882
ORF1ab/nsp3	496	A496T	Gcg	Acg	4	4	AY.4.2	0.000087
ORF1ab/nsp3	496	A496A	gcG	gcT	4	4	AY.4.2.1	0.000596
ORF1ab/nsp3	496	A496V	gCg	gTg	4	4	AY.4.5	0.00043
ORF1ab/nsp3	496	A496V	gCg	gTg	4	4	AY.42	0.000161
ORF1ab/nsp3	496	A496T	Gcg	Acg	4	4	AY.5	0.000083
ORF1ab/nsp3	496	A496A	gcG	gcT	4	4	AY.5.4	0.001107
ORF1ab/nsp3	496	A496A	gcG	gcC	2	4	AY.55	0.001835
ORF1ab/nsp3	496	A496A	gcG	gcT	1	4	AY.55	0.000917
ORF1ab/nsp3	496	A496A	gcG	gcA	1	4	AY.55	0.000917
ORF1ab/nsp3	496	A496V	gCg	gTg	4	4	AY.6	0.000165
ORF1ab/nsp3	496	A496V	gCg	gTg	4	4	AY.9.1	0.000335
ORF1ab/nsp3	496	A496A	gcG	gcT	3	4	AY.91	0.002191
ORF1ab/nsp3	496	A496A	gcG	gcA	1	4	AY.91	0.00073
ORF1ab/nsp3	496	A496T	Gcg	Acg	4	4	AY.98.1	0.000194
ORF1ab/nsp3	496	A496S	Gcg	Tcg	4	4	B.1	0.000037
ORF1ab/nsp3	496	A496S	Gcg	Tcg	3	4	B.1.1	0.000054
ORF1ab/nsp3	496	A496S	GcG	TcA	1	4	B.1.1	0.000018
ORF1ab/nsp3	496	A496V	gCg	gTg	4	4	B.1.1.1	0.001307
ORF1ab/nsp3	496	A496A	gcG	gcT	3	4	B.1.1.1	0.00098
ORF1ab/nsp3	496	A496A	gcG	gcA	1	4	B.1.1.1	0.000327
ORF1ab/nsp3	496	A496A	gcG	gcT	3	4	B.1.1.214	0.000166
ORF1ab/nsp3	496	A496A	gcG	gcA	1	4	B.1.1.214	0.000055
ORF1ab/nsp3	496	A496T	Gcg	Acg	4	4	B.1.1.222	0.000816
ORF1ab/nsp3	496	A496A	gcG	gcT	4	4	B.1.1.28	0.001245
ORF1ab/nsp3	496	A496V	gCg	gTg	4	4	B.1.1.291	0.00297
ORF1ab/nsp3	496	A496V	gCg	gTg	4	4	B.1.1.487	0.022346
ORF1ab/nsp3	496	A496T	Gcg	Acg	4	4	B.1.1.519	0.000159
ORF1ab/nsp3	496	A496A	gcG	gcT	4	4	B.1.1.526	0.014184
ORF1ab/nsp3	496	A496T	Gcg	Acg	4	4	B.1.177.18	0.00464
ORF1ab/nsp3	496	A496V	gCg	gTg	4	4	B.1.177.50	0.018779
ORF1ab/nsp3	496	A496A	gcG	gcT	4	4	B.1.44	0.033333
ORF1ab/nsp3	496	A496V	gCg	gTg	4	4	B.1.571	0.038835
ORF1ab/nsp3	496	A496A	gcG	gcA	4	4	D.2	0.0003
ORF1ab/nsp3	496	A496V	gCg	gTg	4	4	P.1.14	0.000191
ORF1ab/nsp3	496	A496A	gcG	gcA	3	3		0.166667
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	AY.10	0.00159
ORF1ab/nsp3	496	A496T	Gcg	Acg	3	3	AY.100	0.000138
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	AY.100	0.000138
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	AY.104	0.005952
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	AY.111	0.000549
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	AY.113	0.000427
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	AY.114	0.000693
ORF1ab/nsp3	496	A496T	Gcg	Acg	3	3	AY.117	0.000254
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	AY.118	0.000188
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	AY.12	0.000948
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	AY.121	0.000406
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	AY.23	0.000209
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	AY.26	0.000085
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	AY.27	0.000194
ORF1ab/nsp3	496	A496S	Gcg	Tcg	3	3	AY.3	0.00003
ORF1ab/nsp3	496	A496A	gcG	gcT	2	3	AY.3.1	0.000171
ORF1ab/nsp3	496	A496A	gcG	gcC	1	3	AY.3.1	0.000085
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	AY.33	0.0002
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	AY.36	0.000445
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	AY.39.1	0.000119
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	AY.4.5	0.000322
ORF1ab/nsp3	496	A496del	GCG	---	3	3	AY.43	0.000013
ORF1ab/nsp3	496	A496S	Gcg	Tcg	3	3	AY.43	0.000013
ORF1ab/nsp3	496	A496T	Gcg	Acg	3	3	AY.47	0.000093
ORF1ab/nsp3	496	A496A	gcG	gcT	2	3	AY.69	0.000373
ORF1ab/nsp3	496	A496A	gcG	gcA	1	3	AY.69	0.000187
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	AY.75.1	0.000541
ORF1ab/nsp3	496	A496A	gcG	gcT	2	3	AY.90	0.001369
ORF1ab/nsp3	496	A496A	gcG	gcA	1	3	AY.90	0.000684
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	AY.99.2	0.000276
ORF1ab/nsp3	496	A496del	GCG	---	3	3	B.1	0.000027
ORF1ab/nsp3	496	A496A	gcG	gcA	2	3	B.1.1.291	0.001485
ORF1ab/nsp3	496	A496A	gcG	gcT	1	3	B.1.1.291	0.000742
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	B.1.1.315	0.025424
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.1.33	0.001263
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.1.348	0.002389
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.1.39	0.001529
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.1.416	0.002715
ORF1ab/nsp3	496	A496del	GCG	---	3	3	B.1.1.7	0.000003
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	B.1.128	0.001906
ORF1ab/nsp3	496	A496A	gcG	gcA	2	3	B.1.177.21	0.000153
ORF1ab/nsp3	496	A496A	gcG	gcT	1	3	B.1.177.21	0.000076
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.177.4	0.000633
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.177.69	0.004451
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.177.73	0.001699
ORF1ab/nsp3	496	A496A	gcG	gcT	2	3	B.1.177.73	0.001133
ORF1ab/nsp3	496	A496A	gcG	gcC	1	3	B.1.177.73	0.000566
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.177.77	0.002179
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.177.84	0.02
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.177.87	0.002183
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	B.1.22	0.003953
ORF1ab/nsp3	496	A496A	gcG	gcA	2	3	B.1.221	0.000142
ORF1ab/nsp3	496	A496A	gcG	gcT	1	3	B.1.221	0.000071
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.234	0.000396
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.258.14	0.002941
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.36.38	0.004926
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.409	0.002344
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	B.1.416.1	0.004687
ORF1ab/nsp3	496	A496A	gcG	gcT	2	3	B.1.438.1	0.000215
ORF1ab/nsp3	496	A496A	gcG	gcC	1	3	B.1.438.1	0.000107
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.466.2	0.001174
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	B.1.576	0.00272
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	B.1.623	0.001609
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	B.1.78	0.025641
ORF1ab/nsp3	496	A496S	Gcg	Tcg	3	3	D.2	0.000225
ORF1ab/nsp3	496	A496V	gCg	gTg	3	3	P.1.1	0.000953
ORF1ab/nsp3	496	A496T	Gcg	Acg	3	3	Q.8	0.000495
ORF1ab/nsp3	496	A496A	gcG	gcT	3	3	R.1	0.00027
ORF1ab/nsp3	496	A496V	gCG	gTA	2	2		0.111111
ORF1ab/nsp3	496	A496G	gCg	gGg	1	2		0.055556
ORF1ab/nsp3	496	A496G	gCG	gGA	1	2		0.055556
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	A.1	0.000564
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	A.23.1	0.001408
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	A.28	0.005291
ORF1ab/nsp3	496	A496S	Gcg	Tcg	2	2	AY.102	0.000053
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	AY.106	0.00067
ORF1ab/nsp3	496	A496A	gcG	gcA	1	2	AY.106	0.000335
ORF1ab/nsp3	496	A496A	gcG	gcT	1	2	AY.106	0.000335
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	AY.113	0.000285
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	AY.16	0.000759
ORF1ab/nsp3	496	A496T	Gcg	Acg	2	2	AY.20	0.000078
ORF1ab/nsp3	496	A496E	gCg	gAg	2	2	AY.25	0.000012
ORF1ab/nsp3	496	A496S	Gcg	Tcg	2	2	AY.25	0.000012
ORF1ab/nsp3	496	A496A	gcG	gcA	1	2	AY.32	0.000532
ORF1ab/nsp3	496	A496A	gcG	gcT	1	2	AY.32	0.000532
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	AY.34	0.000194
ORF1ab/nsp3	496	A496T	Gcg	Acg	2	2	AY.34	0.000194
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	AY.34.1	0.00102
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	AY.37	0.000632
ORF1ab/nsp3	496	A496E	gCg	gAg	2	2	AY.43	0.000009
ORF1ab/nsp3	496	A496T	Gcg	Acg	2	2	AY.45	0.000243
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	AY.45	0.000243
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	AY.46.4	0.000329
ORF1ab/nsp3	496	A496A	gcG	gcT	1	2	AY.46.6	0.000072
ORF1ab/nsp3	496	A496A	gcG	gcA	1	2	AY.46.6	0.000072
ORF1ab/nsp3	496	A496A	gcG	gcA	2	2	AY.5.3	0.000675
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	AY.64	0.00119
ORF1ab/nsp3	496	A496A	gcG	gcT	1	2	AY.65	0.000533
ORF1ab/nsp3	496	A496A	gcG	gcC	1	2	AY.65	0.000533
ORF1ab/nsp3	496	A496A	gcG	gcT	1	2	AY.68	0.000274
ORF1ab/nsp3	496	A496A	gcG	gcC	1	2	AY.68	0.000274
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	AY.7.2	0.001119
ORF1ab/nsp3	496	A496T	Gcg	Acg	2	2	AY.77	0.002255
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	AY.77	0.002255
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	AY.78	0.003082
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	AY.9	0.000135
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	AY.9	0.000135
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	AY.92	0.000575
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	AY.94	0.000885
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	AY.98.1	0.000097
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B	0.000256
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.1.117	0.019417
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.1.128	0.014184
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.1.189	0.003026
ORF1ab/nsp3	496	A496T	Gcg	Acg	2	2	B.1.1.210	0.011429
ORF1ab/nsp3	496	A496T	Gcg	Acg	2	2	B.1.1.216	0.001781
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.1.220	0.003717
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.1.25	0.001137
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.1.28	0.000622
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.1.311	0.000716
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.1.337	0.007194
ORF1ab/nsp3	496	A496A	gcG	gcA	2	2	B.1.1.348	0.001592
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.1.356	0.017094
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.1.369	0.000892
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.1.432	0.002532
ORF1ab/nsp3	496	A496T	Gcg	Acg	2	2	B.1.1.462	0.017241
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.1.517	0.013605
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.1.528	0.009615
ORF1ab/nsp3	496	A496del1	gcG	gc-	1	2	B.1.1.7	0.000001
ORF1ab/nsp3	496	A496del1	Gcg	-cg	1	2	B.1.1.7	0.000001
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.117	0.025
ORF1ab/nsp3	496	A496T	Gcg	Acg	2	2	B.1.177	0.000026
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.177.12	0.000303
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.177.32	0.002699
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.177.44	0.001038
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.177.44	0.001038
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.177.54	0.001213
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.177.62	0.002384
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.177.81	0.000379
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.177.82	0.000955
ORF1ab/nsp3	496	A496A	gcG	gcA	2	2	B.1.177.86	0.000367
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.214	0.007326
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.232	0.001075
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.258.4	0.006897
ORF1ab/nsp3	496	A496A	gcG	gcA	2	2	B.1.273	0.025974
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.311	0.000549
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.349	0.00143
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.36.22	0.002415
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.36.29	0.001035
ORF1ab/nsp3	496	A496S	Gcg	Tcg	2	2	B.1.427	0.000101
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.466	0.046512
ORF1ab/nsp3	496	A496A	gcG	gcA	2	2	B.1.505	0.008772
ORF1ab/nsp3	496	A496A	gcG	gcA	1	2	B.1.509	0.000866
ORF1ab/nsp3	496	A496A	gcG	gcT	1	2	B.1.509	0.000866
ORF1ab/nsp3	496	A496P	Gcg	Ccg	2	2	B.1.525	0.000226
ORF1ab/nsp3	496	A496T	Gcg	Acg	2	2	B.1.526	0.000047
ORF1ab/nsp3	496	A496A	gcG	gcA	2	2	B.1.537	0.04
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.546	0.007407
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.561	0.000794
ORF1ab/nsp3	496	A496T	Gcg	Acg	2	2	B.1.596	0.000174
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.1.609	0.000959
ORF1ab/nsp3	496	A496A	gcG	gcC	1	2	B.1.609	0.000479
ORF1ab/nsp3	496	A496A	gcG	gcT	1	2	B.1.609	0.000479
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.621	0.000177
ORF1ab/nsp3	496	A496A	gcG	gcT	1	2	B.1.637	0.000073
ORF1ab/nsp3	496	A496A	gcG	gcA	1	2	B.1.637	0.000073
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	B.1.8	0.003945
ORF1ab/nsp3	496	A496A	gcG	gcA	2	2	B.3	0.001661
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	B.35	0.015625
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	C.27	0.037037
ORF1ab/nsp3	496	A496A	gcG	gcA	2	2	C.30	0.003454
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	N.5	0.003534
ORF1ab/nsp3	496	A496A	gcG	gcT	2	2	P.1.2	0.002312
ORF1ab/nsp3	496	A496V	gCg	gTg	2	2	P.1.2	0.002312
ORF1ab/nsp3	496	A496A	gcG	gcT	1	2	P.1.7	0.000319
ORF1ab/nsp3	496	A496A	gcG	gcA	1	2	P.1.7	0.000319
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	A	0.000387
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	A	0.000387
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	A.2.5	0.000499
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	A.2.5.2	0.001572
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	A.21	0.00277
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	A.21	0.00277
ORF1ab/nsp3	496	A496del2	GCG	--A	1	1	All	0
ORF1ab/nsp3	496	A496K	GCg	AAg	1	1	All	0
ORF1ab/nsp3	496	A496M	GCg	ATg	1	1	All	0
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AU.3	0.00211
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AW.1	0.003049
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.10	0.00053
ORF1ab/nsp3	496	A496del	GCG	---	1	1	AY.103	0.000006
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.105	0.000643
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	AY.107	0.000466
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.107	0.000466
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	AY.118	0.000063
ORF1ab/nsp3	496	A496E	gCg	gAg	1	1	AY.119	0.000035
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	AY.119	0.000035
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.12	0.000316
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	AY.120	0.000037
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	AY.120	0.000037
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.120.1	0.000321
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.121	0.000135
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.14	0.000088
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	AY.16	0.00038
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.16.1	0.00047
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.16.1	0.00047
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.19	0.00114
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	AY.20	0.000039
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.21	0.001898
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.24	0.000431
ORF1ab/nsp3	496	A496del	GCG	---	1	1	AY.25	0.000006
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	AY.29	0.000016
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.32	0.000532
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	AY.37	0.000316
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	AY.39	0.000025
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	AY.39.1	0.00004
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.39.2	0.001541
ORF1ab/nsp3	496	A496E	gCg	gAg	1	1	AY.4	0.000002
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.4.4	0.000409
ORF1ab/nsp3	496	A496del	GCG	---	1	1	AY.4.5	0.000107
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	AY.40	0.000964
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	AY.40	0.000964
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.41	0.000294
ORF1ab/nsp3	496	A496del1	gcG	gc-	1	1	AY.44	0.000006
ORF1ab/nsp3	496	A496K	GCg	AAg	1	1	AY.44	0.000006
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.46	0.000104
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	AY.46.2	0.000635
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	AY.46.2	0.000635
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	AY.46.3	0.000934
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.46.5	0.000198
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.5.4	0.000277
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.54	0.000095
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.56	0.001605
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.59	0.00053
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.62	0.000436
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.68	0.000274
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	AY.68	0.000274
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.7.1	0.000113
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.7.1	0.000113
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.71	0.000475
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.74	0.000116
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	AY.74	0.000116
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	AY.77	0.001127
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	AY.84	0.000437
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	AY.9.2	0.000037
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	AY.90	0.000684
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.92	0.000287
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.93	0.000273
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.94	0.000443
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	AY.97	0.001701
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.98	0.000079
ORF1ab/nsp3	496	A496del	GCG	---	1	1	AY.99	0.001049
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	AY.99	0.001049
ORF1ab/nsp3	496	A496G	gCg	gGg	1	1	AZ.1	0.000867
ORF1ab/nsp3	496	A496del2	GCG	--A	1	1	B	0.000128
ORF1ab/nsp3	496	A496P	Gcg	Ccg	1	1	B.1	0.000009
ORF1ab/nsp3	496	A496E	gCg	gAg	1	1	B.1.1	0.000018
ORF1ab/nsp3	496	A496del1	GcG	Ac-	1	1	B.1.1	0.000018
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	B.1.1.129	0.009174
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.1.148	0.008772
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.161	0.003534
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.1.164	0.005155
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.170	0.001247
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	B.1.1.171	0.003676
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.192	0.002309
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.200	0.007463
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	B.1.1.214	0.000055
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.216	0.00089
ORF1ab/nsp3	496	A496del	GCG	---	1	1	B.1.1.216	0.00089
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.216	0.00089
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.222	0.000204
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.241	0.00207
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.244	0.015385
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.25	0.000569
ORF1ab/nsp3	496	A496P	Gcg	Ccg	1	1	B.1.1.25	0.000569
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.257	0.009709
ORF1ab/nsp3	496	A496E	gCg	gAg	1	1	B.1.1.28	0.000311
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.284	0.000107
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.284	0.000107
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.309	0.005848
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.311	0.000358
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.317	0.000412
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.318	0.000302
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.1.326	0.001761
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.1.33	0.000421
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.336	0.016667
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	B.1.1.337	0.003597
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.350	0.04
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.37	0.000193
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.372	0.000689
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	B.1.1.385	0.004464
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.398	0.003226
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.413	0.006897
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.416	0.000905
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.417	0.002703
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	B.1.1.428	0.009434
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.44	0.00241
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.1.452	0.111111
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.1.464	0.001473
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.1.47	0.005348
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.1.486	0.001577
ORF1ab/nsp3	496	A496del	GCG	---	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.1.61	0.008772
ORF1ab/nsp3	496	A496P	Gcg	Ccg	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	496	A496M	GCg	ATg	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	B.1.127	0.002198
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.157	0.002985
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.160.33	0.004425
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.160.7	0.002079
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	B.1.177	0.000013
ORF1ab/nsp3	496	A496P	Gcg	Ccg	1	1	B.1.177	0.000013
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.177.11	0.001698
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.177.17	0.000821
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.177.18	0.00116
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	B.1.177.21	0.000076
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.177.23	0.003236
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.177.3	0.007634
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.177.33	0.001645
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.177.33	0.001645
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.177.4	0.000211
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.177.48	0.003125
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	B.1.177.54	0.000606
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.177.57	0.000281
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.177.6	0.000977
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.177.69	0.001484
ORF1ab/nsp3	496	A496del	GCG	---	1	1	B.1.177.86	0.000183
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.177.9	0.001332
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.206	0.000816
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.206	0.000816
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	B.1.221.1	0.002907
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.23	0.006061
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.236	0.002053
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.240	0.000216
ORF1ab/nsp3	496	A496P	Gcg	Ccg	1	1	B.1.243	0.00007
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	B.1.258	0.000067
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	B.1.258	0.000067
ORF1ab/nsp3	496	A496del	GCG	---	1	1	B.1.258.16	0.001637
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.258.17	0.000104
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.258.7	0.001912
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.260	0.003344
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.264	0.012346
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.265	0.001271
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.298	0.002114
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.302	0.013333
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.349	0.000715
ORF1ab/nsp3	496	A496G	gCg	gGg	1	1	B.1.351	0.00003
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.351.2	0.000303
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	B.1.351.5	0.0006
ORF1ab/nsp3	496	A496del	GCG	---	1	1	B.1.36	0.000146
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.36.1	0.00114
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.36.17	0.000494
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.36.18	0.00042
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.36.18	0.00042
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.36.31	0.001751
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.36.36	0.000602
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.36.36	0.000602
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.36.8	0.001
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.36.8	0.001
ORF1ab/nsp3	496	A496E	gCg	gAg	1	1	B.1.36.8	0.001
ORF1ab/nsp3	496	A496E	gCg	gAg	1	1	B.1.378	0.006849
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	B.1.383	0.009009
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.396	0.000706
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.40	0.019608
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.400	0.000429
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.409	0.000781
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.416	0.001269
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.428	0.00102
ORF1ab/nsp3	496	A496G	gCg	gGg	1	1	B.1.429	0.000024
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	B.1.438.1	0.000107
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	B.1.438.1	0.000107
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.438.1	0.000107
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.453	0.003236
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.498	0.020408
ORF1ab/nsp3	496	A496E	gCg	gAg	1	1	B.1.525	0.000113
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.525	0.000113
ORF1ab/nsp3	496	A496P	Gcg	Ccg	1	1	B.1.526	0.000024
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	B.1.526	0.000024
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.572	0.025
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.574	0.002151
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.575	0.000303
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	B.1.582	0.000491
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.595	0.000261
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.596	0.000087
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.596.1	0.009346
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	B.1.601	0.030303
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.605	0.005952
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	496	A496del1	gcG	gc-	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	496	A496del	GCG	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	496	A496P	Gcg	Ccg	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.1.619	0.000871
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.1.621	0.000089
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	B.1.621.1	0.000506
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	B.1.627	0.00202
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	B.1.93	0.000934
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	B.4.7	0.010101
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.40	0.000364
ORF1ab/nsp3	496	A496del	GCG	---	1	1	B.57	0.015152
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	B.6	0.00091
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	B.6	0.00091
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	C.36	0.000911
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	C.36.3	0.000567
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	C.36.3.1	0.002717
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	D.2	0.000075
ORF1ab/nsp3	496	A496P	Gcg	Ccg	1	1	D.3	0.005917
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	N.6	0.007092
ORF1ab/nsp3	496	A496del	GCG	---	1	1	P.1	0.000016
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	P.1.1	0.000318
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	P.1.10	0.000269
ORF1ab/nsp3	496	A496A	gcG	gcA	1	1	P.1.12	0.000484
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	P.1.14	0.000048
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	P.1.15	0.000232
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	P.1.15	0.000232
ORF1ab/nsp3	496	A496E	gCg	gAg	1	1	P.1.15	0.000232
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	P.1.16	0.000374
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	P.1.16	0.000374
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	P.1.17	0.000162
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	P.1.6	0.001946
ORF1ab/nsp3	496	A496T	Gcg	Acg	1	1	P.2	0.000187
ORF1ab/nsp3	496	A496S	Gcg	Tcg	1	1	P.2	0.000187
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	P.2	0.000187
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	Q.1	0.000126
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	Q.3	0.000145
ORF1ab/nsp3	496	A496V	gCg	gTg	1	1	Q.5	0.016949
ORF1ab/nsp3	496	A496A	gcG	gcT	1	1	Q.8	0.000165
ORF1ab/nsp3	496	A496del	GCG	---	1	1	R.1	0.00009
ORF1ab/nsp3	496	A496del	GCG	---	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.