CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 492

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3492T492IT1310InonsynaCtaTt1681168114193-4195
ORF1ab/nsp3492T492TT1310TsynacTacA9226250.6778744193-4195
ORF1ab/nsp3492T492TT1310TsynacTacC9222840.3080264193-4195
ORF1ab/nsp3492T492TT1310TsynacTacG922130.01409984193-4195
ORF1ab/nsp3492T492delT1310deldelACT---171714193-4195
ORF1ab/nsp3492T492AT1310AnonsynActGct7714193-4195
ORF1ab/nsp3492T492NT1310NnonsynaCtaAt6614193-4195
ORF1ab/nsp3492T492ST1310SnonsynActTct3314193-4195
ORF1ab/nsp3492T492PT1310PnonsynActCct3314193-4195
ORF1ab/nsp3492T492DT1310DnonsynACtGAt2214193-4195
ORF1ab/nsp3492T492HT1310HnonsynACtCAt2214193-4195
ORF1ab/nsp3492T492del1T1310del1delaCta-t210.54193-4195
ORF1ab/nsp3492T492del1T1310del1delAct-ct210.54193-4195
ORF1ab/nsp3492T492FT1310FnonsynACtTTt1114193-4195
ORF1ab/nsp3492T492LT1310LnonsynACTCTC1114193-4195

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3492T492IaCtaTt16811681All0.000322
ORF1ab/nsp3492T492IaCtaTt14361436B.1.1.70.001286
ORF1ab/nsp3492T492TacTacA625922All0.00012
ORF1ab/nsp3492T492TacTacC284922All0.000054
ORF1ab/nsp3492T492TacTacG13922All0.000002
ORF1ab/nsp3492T492TacTacA587587B.1.177.110.996604
ORF1ab/nsp3492T492TacTacC182187B.1.1.70.000163
ORF1ab/nsp3492T492TacTacA5187B.1.1.70.000004
ORF1ab/nsp3492T492IaCtaTt7070AY.30.000696
ORF1ab/nsp3492T492IaCtaTt2828R.10.00252
ORF1ab/nsp3492T492IaCtaTt2626B.1.1770.000342
ORF1ab/nsp3492T492IaCtaTt1818AY.40.000028
ORF1ab/nsp3492T492TacTacC1418AY.40.000022
ORF1ab/nsp3492T492TacTacA418AY.40.000006
ORF1ab/nsp3492T492delACT---1717All0.000003
ORF1ab/nsp3492T492TacTacC1717B.1.1600.00053
ORF1ab/nsp3492T492TacTacG814AY.1030.00005
ORF1ab/nsp3492T492TacTacC614AY.1030.000037
ORF1ab/nsp3492T492IaCtaTt1414B.10.000128
ORF1ab/nsp3492T492IaCtaTt99B.1.617.20.000034
ORF1ab/nsp3492T492TacTacC88AY.1190.000282
ORF1ab/nsp3492T492IaCtaTt88AY.250.000048
ORF1ab/nsp3492T492AActGct77All0.000001
ORF1ab/nsp3492T492TacTacC57AY.430.000022
ORF1ab/nsp3492T492TacTacA27AY.430.000009
ORF1ab/nsp3492T492TacTacC77AY.990.007345
ORF1ab/nsp3492T492TacTacC57B.10.000046
ORF1ab/nsp3492T492TacTacG27B.10.000018
ORF1ab/nsp3492T492NaCtaAt66All0.000001
ORF1ab/nsp3492T492IaCtaTt66AY.440.000037
ORF1ab/nsp3492T492TacTacA66AY.46.40.000987
ORF1ab/nsp3492T492TacTacC66B.1.177.570.001686
ORF1ab/nsp3492T492TacTacA56B.1.20.000044
ORF1ab/nsp3492T492TacTacC16B.1.20.000009
ORF1ab/nsp3492T492IaCtaTt55B.1.10.000091
ORF1ab/nsp3492T492IaCtaTt44AY.420.000161
ORF1ab/nsp3492T492SActTct33All0.000001
ORF1ab/nsp3492T492PActCct33All0.000001
ORF1ab/nsp3492T492IaCtaTt33AY.1030.000019
ORF1ab/nsp3492T492IaCtaTt33AY.1170.000254
ORF1ab/nsp3492T492TacTacA23AY.250.000012
ORF1ab/nsp3492T492TacTacC13AY.250.000006
ORF1ab/nsp3492T492IaCtaTt33AY.330.0002
ORF1ab/nsp3492T492TacTacC23AY.440.000012
ORF1ab/nsp3492T492TacTacA13AY.440.000006
ORF1ab/nsp3492T492AActGct33B.10.000027
ORF1ab/nsp3492T492delACT---33B.1.1.70.000003
ORF1ab/nsp3492T492IaCtaTt33B.1.20.000026
ORF1ab/nsp3492T492IaCtaTt33B.1.2430.000209
ORF1ab/nsp3492T492IaCtaTt33B.1.36.210.006479
ORF1ab/nsp3492T492TacTacA33B.1.5260.000071
ORF1ab/nsp3492T492TacTacC23B.1.617.20.000008
ORF1ab/nsp3492T492TacTacG13B.1.617.20.000004
ORF1ab/nsp3492T492DACtGAt220.111111
ORF1ab/nsp3492T492HACtCAt220.111111
ORF1ab/nsp3492T492AActGct220.111111
ORF1ab/nsp3492T492NaCtaAt220.111111
ORF1ab/nsp3492T492PActCct220.111111
ORF1ab/nsp3492T492DACtGAt22All0
ORF1ab/nsp3492T492HACtCAt22All0
ORF1ab/nsp3492T492del1Act-ct12All0
ORF1ab/nsp3492T492del1aCta-t12All0
ORF1ab/nsp3492T492IaCtaTt22AY.1000.000092
ORF1ab/nsp3492T492IaCtaTt22AY.1010.000981
ORF1ab/nsp3492T492IaCtaTt22AY.1180.000125
ORF1ab/nsp3492T492IaCtaTt22AY.1190.000071
ORF1ab/nsp3492T492TacTacC22AY.290.000032
ORF1ab/nsp3492T492TacTacC22AY.30.00002
ORF1ab/nsp3492T492TacTacC12AY.390.000025
ORF1ab/nsp3492T492TacTacA12AY.390.000025
ORF1ab/nsp3492T492IaCtaTt22AY.430.000009
ORF1ab/nsp3492T492delACT---22AY.430.000009
ORF1ab/nsp3492T492TacTacA22AY.99.20.000184
ORF1ab/nsp3492T492delACT---22B.10.000018
ORF1ab/nsp3492T492NaCtaAt22B.1.1770.000026
ORF1ab/nsp3492T492IaCtaTt22B.1.177.600.000437
ORF1ab/nsp3492T492TacTacC22B.1.2100.004264
ORF1ab/nsp3492T492TacTacC22P.10.000032
ORF1ab/nsp3492T492IaCtaTt22P.10.000032
ORF1ab/nsp3492T492FACtTTt11All0
ORF1ab/nsp3492T492LACTCTC11All0
ORF1ab/nsp3492T492TacTacC11AY.1020.000027
ORF1ab/nsp3492T492FACtTTt11AY.1030.000006
ORF1ab/nsp3492T492TacTacC11AY.1060.000335
ORF1ab/nsp3492T492IaCtaTt11AY.1130.000142
ORF1ab/nsp3492T492TacTacC11AY.1200.000037
ORF1ab/nsp3492T492IaCtaTt11AY.1210.000135
ORF1ab/nsp3492T492TacTacA11AY.200.000039
ORF1ab/nsp3492T492IaCtaTt11AY.230.00007
ORF1ab/nsp3492T492IaCtaTt11AY.390.000025
ORF1ab/nsp3492T492TacTacC11AY.4.50.000107
ORF1ab/nsp3492T492delACT---11AY.4.50.000107
ORF1ab/nsp3492T492AActGct11AY.430.000004
ORF1ab/nsp3492T492IaCtaTt11AY.450.000122
ORF1ab/nsp3492T492IaCtaTt11AY.460.000104
ORF1ab/nsp3492T492TacTacA11AY.46.30.000934
ORF1ab/nsp3492T492IaCtaTt11AY.50.000021
ORF1ab/nsp3492T492LACTCTC11AY.610.000105
ORF1ab/nsp3492T492TacTacC11AY.710.000475
ORF1ab/nsp3492T492TacTacC11AY.910.00073
ORF1ab/nsp3492T492IaCtaTt11AY.940.000443
ORF1ab/nsp3492T492TacTacC11AY.98.10.000048
ORF1ab/nsp3492T492delACT---11AY.990.001049
ORF1ab/nsp3492T492IaCtaTt11B0.000128
ORF1ab/nsp3492T492del1aCta-t11B.10.000009
ORF1ab/nsp3492T492SActTct11B.1.10.000018
ORF1ab/nsp3492T492TacTacC11B.1.10.000018
ORF1ab/nsp3492T492NaCtaAt11B.1.10.000018
ORF1ab/nsp3492T492TacTacA11B.1.1.1570.000913
ORF1ab/nsp3492T492delACT---11B.1.1.2160.00089
ORF1ab/nsp3492T492IaCtaTt11B.1.1.2840.000107
ORF1ab/nsp3492T492TacTacC11B.1.1.3060.000438
ORF1ab/nsp3492T492TacTacG11B.1.1.3560.008547
ORF1ab/nsp3492T492TacTacA11B.1.1.3690.000446
ORF1ab/nsp3492T492IaCtaTt11B.1.1.500.000679
ORF1ab/nsp3492T492delACT---11B.1.1.5190.00004
ORF1ab/nsp3492T492PActCct11B.1.1.70.000001
ORF1ab/nsp3492T492TacTacC11B.1.160.100.008065
ORF1ab/nsp3492T492IaCtaTt11B.1.177.30.007634
ORF1ab/nsp3492T492TacTacA11B.1.177.600.000218
ORF1ab/nsp3492T492IaCtaTt11B.1.177.70.000165
ORF1ab/nsp3492T492TacTacA11B.1.177.810.000189
ORF1ab/nsp3492T492delACT---11B.1.177.860.000183
ORF1ab/nsp3492T492IaCtaTt11B.1.2060.000816
ORF1ab/nsp3492T492IaCtaTt11B.1.230.006061
ORF1ab/nsp3492T492IaCtaTt11B.1.2340.000132
ORF1ab/nsp3492T492TacTacC11B.1.2340.000132
ORF1ab/nsp3492T492SActTct11B.1.2340.000132
ORF1ab/nsp3492T492AActGct11B.1.2430.00007
ORF1ab/nsp3492T492IaCtaTt11B.1.2580.000067
ORF1ab/nsp3492T492TacTacG11B.1.2580.000067
ORF1ab/nsp3492T492IaCtaTt11B.1.3110.000275
ORF1ab/nsp3492T492TacTacA11B.1.3110.000275
ORF1ab/nsp3492T492TacTacC11B.1.3510.00003
ORF1ab/nsp3492T492NaCtaAt11B.1.3510.00003
ORF1ab/nsp3492T492IaCtaTt11B.1.3510.00003
ORF1ab/nsp3492T492delACT---11B.1.360.000146
ORF1ab/nsp3492T492SActTct11B.1.3960.000706
ORF1ab/nsp3492T492TacTacC11B.1.4270.00005
ORF1ab/nsp3492T492IaCtaTt11B.1.5170.000427
ORF1ab/nsp3492T492del1Act-ct11B.1.5800.004065
ORF1ab/nsp3492T492IaCtaTt11B.1.5820.000491
ORF1ab/nsp3492T492TacTacC11B.1.5960.000087
ORF1ab/nsp3492T492IaCtaTt11B.1.617.10.000129
ORF1ab/nsp3492T492TacTacC11B.1.6200.000946
ORF1ab/nsp3492T492TacTacC11B.1.6370.000073
ORF1ab/nsp3492T492TacTacC11B.400.000364
ORF1ab/nsp3492T492delACT---11B.570.015152
ORF1ab/nsp3492T492IaCtaTt11D.20.000075
ORF1ab/nsp3492T492delACT---11P.10.000016
ORF1ab/nsp3492T492IaCtaTt11P.1.140.000048
ORF1ab/nsp3492T492TacTacC11P.1.140.000048
ORF1ab/nsp3492T492IaCtaTt11P.1.70.000319
ORF1ab/nsp3492T492TacTacC11P.40.003802
ORF1ab/nsp3492T492delACT---11R.10.00009
ORF1ab/nsp3492T492delACT---11U.30.003861