CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 488 | A488S | A1306S | nonsyn | Gct | Tct | 2403423 | 2394155 | 0.996144 | 4181-4183 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2394155 | 2403423 | All | 0.45791 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 633278 | 642113 | AY.4 | 0.985648 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 224187 | 224372 | B.1.617.2 | 0.844157 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 203024 | 203097 | AY.43 | 0.89949 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 165741 | 165743 | AY.25 | 0.996902 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 162514 | 162520 | AY.44 | 0.989184 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 160231 | 160292 | AY.103 | 0.994884 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 100248 | 100250 | AY.3 | 0.997106 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 63368 | 63368 | AY.29 | 0.999543 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 48370 | 48372 | AY.5 | 0.998802 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 46084 | 46086 | AY.4.2 | 0.999501 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 39929 | 39947 | AY.39 | 0.986705 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 37648 | 37653 | AY.102 | 0.998197 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 28203 | 28203 | AY.119 | 0.995798 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 26860 | 26861 | AY.120 | 0.998624 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 25543 | 25543 | AY.20 | 0.992732 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 25015 | 25015 | AY.39.1 | 0.990929 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 24719 | 24736 | AY.42 | 0.994448 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 24267 | 24267 | AY.6 | 0.998067 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 21608 | 21608 | AY.100 | 0.994111 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 20543 | 20545 | AY.98.1 | 0.994915 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 15868 | 15870 | AY.118 | 0.994111 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 14837 | 14837 | AY.33 | 0.990785 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 14054 | 14055 | AY.23 | 0.980261 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 13746 | 13752 | AY.46.6 | 0.992563 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 12463 | 12464 | AY.98 | 0.984517 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 11707 | 11707 | AY.3.1 | 0.998124 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 11583 | 11583 | AY.117 | 0.978955 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 10793 | 10793 | AY.99.2 | 0.994655 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 10237 | 10237 | AY.34 | 0.992631 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 9517 | 9518 | AY.46 | 0.990529 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 9275 | 9287 | AY.4.5 | 0.99699 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 8853 | 8853 | AY.7.1 | 0.997746 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 8011 | 8012 | AY.45 | 0.974811 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 7318 | 7321 | AY.121 | 0.990257 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 6882 | 6882 | AY.113 | 0.979923 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 6716 | 6716 | AY.36 | 0.995405 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 6660 | 6661 | AY.4.2.1 | 0.992253 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 6070 | 6070 | AY.46.4 | 0.998519 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 5452 | 5452 | AY.111 | 0.998535 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 5093 | 5093 | AY.7 | 0.998236 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 5040 | 5040 | AY.46.5 | 1 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 4535 | 4535 | AY.29.1 | 1 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 4297 | 4297 | AY.114 | 0.993067 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 4224 | 4224 | AY.110 | 0.475997 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3541 | 3541 | AY.5.4 | 0.979801 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3481 | 3495 | AY.93 | 0.950573 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3371 | 3371 | AY.92 | 0.9684 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3367 | 3367 | AY.41 | 0.989712 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3356 | 3356 | AY.116 | 0.962432 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3202 | 3202 | AY.116.1 | 0.997197 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3142 | 3142 | AY.12 | 0.993047 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3109 | 3109 | AY.120.1 | 0.998074 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2919 | 2920 | AY.5.3 | 0.984818 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2904 | 2904 | AY.106 | 0.972539 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2506 | 2506 | AY.1 | 0.99169 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2433 | 2433 | AY.4.4 | 0.995499 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2396 | 2396 | AY.23.1 | 1 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2307 | 2307 | AY.85 | 0.985476 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2266 | 2266 | AY.84 | 0.991251 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2252 | 2252 | AY.94 | 0.996901 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2141 | 2141 | AY.107 | 0.99767 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2030 | 2030 | AY.101 | 0.995586 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2004 | 2004 | AY.120.2.1 | 0.998505 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1944 | 1944 | AY.34.1 | 0.991331 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1814 | 1814 | AY.32 | 0.965921 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1777 | 1777 | AY.7.2 | 0.993848 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1471 | 1471 | AY.46.2 | 0.934562 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1466 | 1466 | AY.105 | 0.942765 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1449 | 1449 | AY.90 | 0.991786 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1379 | 1379 | AY.39.1.1 | 0.999275 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1344 | 1344 | AY.91 | 0.981738 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1343 | 1343 | AY.4.1 | 0.990413 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1333 | 1333 | AY.109 | 0.985947 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1278 | 1278 | AY.95 | 0.972603 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1181 | 1181 | AY.4.3 | 0.994108 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1179 | 1179 | AY.87 | 0.981682 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1165 | 1165 | AY.86 | 0.966805 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1108 | 1109 | AY.88 | 0.979664 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1061 | 1061 | AY.46.3 | 0.990663 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 953 | 957 | AY.46.1 | 0.978439 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 951 | 951 | AY.47 | 0.029581 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 930 | 930 | AY.99 | 0.975866 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 897 | 897 | AY.75 | 0.050252 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 882 | 882 | AY.80 | 0.995485 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 852 | 852 | B.1 | 0.007804 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 841 | 841 | AY.77 | 0.94814 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 825 | 825 | AY.79 | 0.998789 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 766 | 766 | AY.108 | 0.844542 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 725 | 725 | AY.120.2 | 0.931877 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 717 | 718 | AY.9.2 | 0.026335 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 712 | 712 | AY.82 | 0.966079 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 648 | 648 | AY.39.2 | 0.998459 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 640 | 640 | AY.99.1 | 0.993789 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 616 | 616 | AY.73 | 0.409847 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 611 | 612 | AY.78 | 0.941448 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 587 | 587 | AY.97 | 0.998299 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 578 | 578 | AY.83 | 0.996552 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 497 | 497 | AY.104 | 0.986111 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 488 | 488 | AY.68 | 0.133589 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 488 | 488 | AY.81 | 0.972112 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 473 | 473 | AY.21 | 0.897533 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 469 | 469 | AY.22 | 0.981172 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 469 | 469 | AY.96 | 0.973029 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 438 | 438 | AY.55 | 0.401835 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 403 | 403 | AY.5.2 | 0.992611 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 380 | 380 | AY.74 | 0.043946 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 347 | 347 | AY.54 | 0.033085 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 305 | 305 | B | 0.038983 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 289 | 291 | AY.59 | 0.153072 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 287 | 287 | AY.58 | 0.260436 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 280 | 280 | AY.19 | 0.31927 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 266 | 266 | AY.5.1 | 1 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 259 | 259 | AY.75.1 | 0.0467 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 245 | 245 | AY.91.1 | 0.995935 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 226 | 226 | AY.53 | 0.06498 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 205 | 205 | AY.76 | 0.990338 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 203 | 203 | AY.89 | 0.995098 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 193 | 193 | AY.52 | 0.157166 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 188 | 188 | AY.26 | 0.005322 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 183 | 183 | AY.69 | 0.034161 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 174 | 174 | AY.115 | 0.90625 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 174 | 174 | AY.62 | 0.075817 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 166 | 166 | AY.64 | 0.09881 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 158 | 158 | AY.67 | 0.073352 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 155 | 155 | AY.10 | 0.082141 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 152 | 152 | AY.37 | 0.04804 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 150 | 150 | AY.56 | 0.24077 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 135 | 135 | AY.16 | 0.051253 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 130 | 130 | AY.63 | 0.05029 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 104 | 104 | AY.13 | 0.016742 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 104 | 104 | AY.57 | 0.068241 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 102 | 102 | AY.40 | 0.098361 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 100 | 100 | AY.14 | 0.008801 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 85 | 85 | AY.48 | 0.039535 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 85 | 85 | AY.70 | 0.017723 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 84 | 84 | AY.35 | 0.019576 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 83 | 83 | B.1.1.234 | 1 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 79 | 79 | AY.65 | 0.042111 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 61 | 61 | AY.60 | 0.057223 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 53 | 53 | AY.11 | 0.07095 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 50 | 51 | AY.71 | 0.023753 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 51 | 51 | B.1.1.7 | 0.000046 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 49 | 49 | AY.38 | 0.024463 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 43 | 43 | B.1.1 | 0.00078 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 40 | 40 | AY.61 | 0.004191 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 37 | 37 | AY.24 | 0.015948 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 37 | 37 | AY.50 | 0.029576 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 37 | 37 | B.1.2 | 0.000326 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 35 | 35 | AY.49 | 0.111821 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 30 | 30 | AY.17 | 0.245902 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 25 | 27 | AY.9 | 0.00169 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 24 | 24 | AY.30 | 0.009497 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 23 | 23 | AY.51 | 0.020909 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 22 | 22 | B.1.596 | 0.001917 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 21 | 21 | AY.16.1 | 0.009868 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 21 | 21 | AY.28 | 0.039698 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 21 | 21 | P.1 | 0.000331 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 16 | 16 | B.1.621 | 0.001416 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 16 | 16 | B.1.623 | 0.008584 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 15 | 15 | B.1.1.526 | 0.053191 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 14 | 14 | AY.66 | 0.014973 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 14 | 14 | AY.8 | 0.008485 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 12 | 12 | AY.9.1 | 0.001005 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 12 | 12 | B.1.617.1 | 0.001548 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 11 | 11 | AY.72 | 0.014966 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 9 | 9 | AY.27 | 0.000582 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 8 | 8 | A | 0.003096 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 5 | 5 | B.1.177.73 | 0.002831 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 5 | 5 | B.1.214 | 0.018315 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 5 | 5 | B.1.375 | 0.004098 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 4 | 4 | B.1.1.523 | 0.00625 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 4 | 4 | B.1.474 | 0.007605 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 4 | 4 | P.1.17 | 0.000647 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3 | 3 | B.1.1.53 | 0.041096 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3 | 3 | B.1.604 | 0.051724 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.1.143 | 0.042553 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.1.158 | 0.047619 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.1.335 | 0.020619 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.1.600 | 0.011696 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.1.606 | 0.012048 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.1.629 | 0.026667 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.512 | 0.028571 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.208 | 0.04 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.355 | 0.011111 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.485 | 0.014925 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.586 | 0.010989 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp3 | 488 | A488S | Gct | Tct | 1 | 1 | P.7 | 0.004367 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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