CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 487 & Codon = aaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3487K487NK1305NnonsynaaGaaT228322790.9982484178-4180

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3487K487NaaGaaT22792283All0.000436
ORF1ab/nsp3487K487NaaGaaT614614AY.620.267538
ORF1ab/nsp3487K487NaaGaaT491491B.1.1.510.843643
ORF1ab/nsp3487K487NaaGaaT151151C.230.877907
ORF1ab/nsp3487K487NaaGaaT119119AY.40.000185
ORF1ab/nsp3487K487NaaGaaT101101B.1.1.70.00009
ORF1ab/nsp3487K487NaaGaaT6666AY.160.025057
ORF1ab/nsp3487K487NaaGaaT5757B.1.360.008316
ORF1ab/nsp3487K487NaaGaaT4747B.1.617.20.000177
ORF1ab/nsp3487K487NaaGaaT3939B.10.000357
ORF1ab/nsp3487K487NaaGaaT3636B.1.1.3470.654545
ORF1ab/nsp3487K487NaaGaaT3131B.1.2210.002202
ORF1ab/nsp3487K487NaaGaaT2728B.1.20.000238
ORF1ab/nsp3487K487NaaGaaT2627B.1.10.000472
ORF1ab/nsp3487K487NaaGaaT2727B.1.1.2580.087948
ORF1ab/nsp3487K487NaaGaaT2525AY.650.013326
ORF1ab/nsp3487K487NaaGaaT2323B.1.596.10.214953
ORF1ab/nsp3487K487NaaGaaT2020AY.390.000494
ORF1ab/nsp3487K487NaaGaaT2020AY.430.000089
ORF1ab/nsp3487K487NaaGaaT1818B.1.1.1280.12766
ORF1ab/nsp3487K487NaaGaaT1616AY.50.00033
ORF1ab/nsp3487K487NaaGaaT1313B.1.1600.000405
ORF1ab/nsp3487K487NaaGaaT1212B.1.1.3180.003621
ORF1ab/nsp3487K487NaaGaaT1111B.1.1.100.012263
ORF1ab/nsp3487K487NaaGaaT1010AY.440.000061
ORF1ab/nsp3487K487NaaGaaT1010B.1.1780.238095
ORF1ab/nsp3487K487NaaGaaT99AY.250.000054
ORF1ab/nsp3487K487NaaGaaT99AY.590.004767
ORF1ab/nsp3487K487NaaGaaT99B.1.1.10.00294
ORF1ab/nsp3487K487NaaGaaT99B.1.3620.013867
ORF1ab/nsp3487K487NaaGaaT88AY.9.20.000294
ORF1ab/nsp3487K487NaaGaaT88B.1.4290.000188
ORF1ab/nsp3487K487NaaGaaT88B.1.5260.000188
ORF1ab/nsp3487K487NaaGaaT77AY.230.000488
ORF1ab/nsp3487K487NaaGaaT66P.10.000095
ORF1ab/nsp3487K487NaaGaaT55AY.1020.000133
ORF1ab/nsp3487K487NaaGaaT55AY.1180.000313
ORF1ab/nsp3487K487NaaGaaT55AY.420.000201
ORF1ab/nsp3487K487NaaGaaT55AY.450.000608
ORF1ab/nsp3487K487NaaGaaT55B.1.1.2140.000277
ORF1ab/nsp3487K487NaaGaaT55B.1.36.290.002587
ORF1ab/nsp3487K487NaaGaaT55B.1.36.350.013021
ORF1ab/nsp3487K487NaaGaaT55P.1.140.000239
ORF1ab/nsp3487K487NaaGaaT44AY.1060.00134
ORF1ab/nsp3487K487NaaGaaT44AY.200.000155
ORF1ab/nsp3487K487NaaGaaT24B.1.1.5190.000079
ORF1ab/nsp3487K487NaaGaaT44B.1.1110.0047
ORF1ab/nsp3487K487NaaGaaT44B.1.1770.000053
ORF1ab/nsp3487K487NaaGaaT44B.1.177.570.001124
ORF1ab/nsp3487K487NaaGaaT44B.1.390.015625
ORF1ab/nsp3487K487NaaGaaT44B.1.6230.002146
ORF1ab/nsp3487K487NaaGaaT33AY.1200.000112
ORF1ab/nsp3487K487NaaGaaT33AY.1210.000406
ORF1ab/nsp3487K487NaaGaaT33AY.290.000047
ORF1ab/nsp3487K487NaaGaaT33AY.370.000948
ORF1ab/nsp3487K487NaaGaaT33AY.4.50.000322
ORF1ab/nsp3487K487NaaGaaT33AY.610.000314
ORF1ab/nsp3487K487NaaGaaT33AY.980.000237
ORF1ab/nsp3487K487NaaGaaT33B.1.1870.1
ORF1ab/nsp3487K487NaaGaaT33B.1.2060.002447
ORF1ab/nsp3487K487NaaGaaT33B.1.3510.000089
ORF1ab/nsp3487K487NaaGaaT33Q.10.000379
ORF1ab/nsp3487K487NaaGaaT33R.10.00027
ORF1ab/nsp3487K487NaaGaaT22AY.1030.000012
ORF1ab/nsp3487K487NaaGaaT22AY.410.000588
ORF1ab/nsp3487K487NaaGaaT22AY.46.10.002053
ORF1ab/nsp3487K487NaaGaaT22AY.470.000062
ORF1ab/nsp3487K487NaaGaaT22AY.5.40.000553
ORF1ab/nsp3487K487NaaGaaT22AY.550.001835
ORF1ab/nsp3487K487NaaGaaT22B0.000256
ORF1ab/nsp3487K487NaaGaaT22B.1.177.430.002954
ORF1ab/nsp3487K487NaaGaaT22B.1.3890.002004
ORF1ab/nsp3487K487NaaGaaT22B.1.4430.009346
ORF1ab/nsp3487K487NaaGaaT22B.1.5820.000981
ORF1ab/nsp3487K487NaaGaaT22P.1.100.000539
ORF1ab/nsp3487K487NaaGaaT22P.70.008734
ORF1ab/nsp3487K487NaaGaaT11A.240.071429
ORF1ab/nsp3487K487NaaGaaT11A.270.001656
ORF1ab/nsp3487K487NaaGaaT11AY.100.00053
ORF1ab/nsp3487K487NaaGaaT11AY.1130.000142
ORF1ab/nsp3487K487NaaGaaT11AY.1150.005208
ORF1ab/nsp3487K487NaaGaaT11AY.1170.000085
ORF1ab/nsp3487K487NaaGaaT11AY.130.000161
ORF1ab/nsp3487K487NaaGaaT11AY.180.010101
ORF1ab/nsp3487K487NaaGaaT11AY.190.00114
ORF1ab/nsp3487K487NaaGaaT11AY.260.000028
ORF1ab/nsp3487K487NaaGaaT11AY.270.000065
ORF1ab/nsp3487K487NaaGaaT11AY.30.00001
ORF1ab/nsp3487K487NaaGaaT11AY.340.000097
ORF1ab/nsp3487K487NaaGaaT11AY.380.000499
ORF1ab/nsp3487K487NaaGaaT11AY.480.000465
ORF1ab/nsp3487K487NaaGaaT11AY.60.000041
ORF1ab/nsp3487K487NaaGaaT11AY.600.000938
ORF1ab/nsp3487K487NaaGaaT11AY.670.000464
ORF1ab/nsp3487K487NaaGaaT11AY.680.000274
ORF1ab/nsp3487K487NaaGaaT11AY.690.000187
ORF1ab/nsp3487K487NaaGaaT11AY.75.10.00018
ORF1ab/nsp3487K487NaaGaaT11AY.98.10.000048
ORF1ab/nsp3487K487NaaGaaT11AZ.30.00152
ORF1ab/nsp3487K487NaaGaaT11B.1.1.1220.045455
ORF1ab/nsp3487K487NaaGaaT11B.1.1.2200.001859
ORF1ab/nsp3487K487NaaGaaT11B.1.1.2410.00207
ORF1ab/nsp3487K487NaaGaaT11B.1.1.2840.000107
ORF1ab/nsp3487K487NaaGaaT11B.1.1.2970.002237
ORF1ab/nsp3487K487NaaGaaT11B.1.1.3060.000438
ORF1ab/nsp3487K487NaaGaaT11B.1.1.3720.000689
ORF1ab/nsp3487K487NaaGaaT11B.1.1.500.000679
ORF1ab/nsp3487K487NaaGaaT11B.1.1.5250.005464
ORF1ab/nsp3487K487NaaGaaT11B.1.1.540.003021
ORF1ab/nsp3487K487NaaGaaT11B.1.214.20.0006
ORF1ab/nsp3487K487NaaGaaT11B.1.2340.000132
ORF1ab/nsp3487K487NaaGaaT11B.1.2400.000216
ORF1ab/nsp3487K487NaaGaaT11B.1.2430.00007
ORF1ab/nsp3487K487NaaGaaT11B.1.2540.025
ORF1ab/nsp3487K487NaaGaaT11B.1.2580.000067
ORF1ab/nsp3487K487NaaGaaT11B.1.3110.000275
ORF1ab/nsp3487K487NaaGaaT11B.1.3240.001605
ORF1ab/nsp3487K487NaaGaaT11B.1.3360.002439
ORF1ab/nsp3487K487NaaGaaT11B.1.36.20.010753
ORF1ab/nsp3487K487NaaGaaT11B.1.36.310.001751
ORF1ab/nsp3487K487NaaGaaT11B.1.36.80.001
ORF1ab/nsp3487K487NaaGaaT11B.1.3690.000285
ORF1ab/nsp3487K487NaaGaaT11B.1.4220.000812
ORF1ab/nsp3487K487NaaGaaT11B.1.4270.00005
ORF1ab/nsp3487K487NaaGaaT11B.1.4620.007246
ORF1ab/nsp3487K487NaaGaaT11B.1.4700.001404
ORF1ab/nsp3487K487NaaGaaT11B.1.5250.000113
ORF1ab/nsp3487K487NaaGaaT11B.1.5460.003704
ORF1ab/nsp3487K487NaaGaaT11B.1.5950.000261
ORF1ab/nsp3487K487NaaGaaT11B.1.5960.000087
ORF1ab/nsp3487K487NaaGaaT11B.1.6000.005848
ORF1ab/nsp3487K487NaaGaaT11B.1.617.10.000129
ORF1ab/nsp3487K487NaaGaaT11B.400.000364
ORF1ab/nsp3487K487NaaGaaT11C.10.002392
ORF1ab/nsp3487K487NaaGaaT11C.300.001727
ORF1ab/nsp3487K487NaaGaaT11C.360.000911
ORF1ab/nsp3487K487NaaGaaT11C.37.10.002618
ORF1ab/nsp3487K487NaaGaaT11P.1.150.000232
ORF1ab/nsp3487K487NaaGaaT11P.1.160.000374
ORF1ab/nsp3487K487NaaGaaT11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.