CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 485

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3485T485IT1303InonsynaCtaTt137313720.9992724172-4174
ORF1ab/nsp3485T485IT1303InonsynaCTaTC137310.0007283324172-4174
ORF1ab/nsp3485T485TT1303TsynacTacC2361870.7923734172-4174
ORF1ab/nsp3485T485TT1303TsynacTacA236470.1991534172-4174
ORF1ab/nsp3485T485TT1303TsynacTacG23620.008474584172-4174
ORF1ab/nsp3485T485AT1303AnonsynActGct50490.984172-4174
ORF1ab/nsp3485T485AT1303AnonsynAcTGcC5010.024172-4174
ORF1ab/nsp3485T485NT1303NnonsynaCtaAt444414172-4174
ORF1ab/nsp3485T485delT1303deldelACT---323214172-4174
ORF1ab/nsp3485T485ST1303SnonsynActTct14120.8571434172-4174
ORF1ab/nsp3485T485ST1303SnonsynaCtaGt1420.1428574172-4174
ORF1ab/nsp3485T485del1T1303del1delAct-ct640.6666674172-4174
ORF1ab/nsp3485T485del1T1303del1delacTac-610.1666674172-4174
ORF1ab/nsp3485T485del1T1303del1delAcTGc-610.1666674172-4174
ORF1ab/nsp3485T485PT1303PnonsynActCct3314172-4174
ORF1ab/nsp3485T485GT1303GnonsynACtGGt2214172-4174
ORF1ab/nsp3485T485KT1303KnonsynaCTaAG2214172-4174
ORF1ab/nsp3485T485del2T1303del2delaCTa--210.54172-4174
ORF1ab/nsp3485T485VT1303VnonsynACtGTt210.54172-4174
ORF1ab/nsp3485T485VT1303VnonsynACTGTC210.54172-4174
ORF1ab/nsp3485T485del2T1303del2delACt--t210.54172-4174
ORF1ab/nsp3485T485LT1303LnonsynACTCTC1114172-4174

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3485T485IaCtaTt13721373All0.000262
ORF1ab/nsp3485T485IaCTaTC11373All0
ORF1ab/nsp3485T485IaCtaTt729729B.1.1.70.000653
ORF1ab/nsp3485T485TacTacC187236All0.000036
ORF1ab/nsp3485T485TacTacA47236All0.000009
ORF1ab/nsp3485T485TacTacG2236All0
ORF1ab/nsp3485T485IaCtaTt107107AY.40.000167
ORF1ab/nsp3485T485IaCtaTt7777AY.250.000463
ORF1ab/nsp3485T485AActGct4950All0.000009
ORF1ab/nsp3485T485AAcTGcC150All0
ORF1ab/nsp3485T485NaCtaAt4444All0.000008
ORF1ab/nsp3485T485TacTacC3536B.1.617.20.000132
ORF1ab/nsp3485T485TacTacG136B.1.617.20.000004
ORF1ab/nsp3485T485IaCtaTt3333B.1.1770.000435
ORF1ab/nsp3485T485IaCtaTt3333B.1.20.000291
ORF1ab/nsp3485T485delACT---3232All0.000006
ORF1ab/nsp3485T485IaCtaTt3030AY.1190.001059
ORF1ab/nsp3485T485IaCtaTt2828AY.1030.000174
ORF1ab/nsp3485T485NaCtaAt2525B.1.1.70.000022
ORF1ab/nsp3485T485TacTacC2424AY.40.000037
ORF1ab/nsp3485T485TacTacC2224AY.430.000097
ORF1ab/nsp3485T485TacTacG124AY.430.000004
ORF1ab/nsp3485T485TacTacA124AY.430.000004
ORF1ab/nsp3485T485TacTacC2022B.1.1.70.000018
ORF1ab/nsp3485T485TacTacA222B.1.1.70.000002
ORF1ab/nsp3485T485IaCtaTt1818AY.430.00008
ORF1ab/nsp3485T485TacTacC1818B.1.1.2420.782609
ORF1ab/nsp3485T485IaCtaTt1717AY.30.000169
ORF1ab/nsp3485T485IaCtaTt1616B.1.4290.000376
ORF1ab/nsp3485T485IaCtaTt1616P.1.10.005083
ORF1ab/nsp3485T485IaCtaTt1515B.1.617.20.000056
ORF1ab/nsp3485T485SActTct1214All0.000002
ORF1ab/nsp3485T485SaCtaGt214All0
ORF1ab/nsp3485T485IaCtaTt1212P.10.000189
ORF1ab/nsp3485T485IaCtaTt1111AY.1020.000292
ORF1ab/nsp3485T485TacTacC1111AY.30.000109
ORF1ab/nsp3485T485NaCtaAt1010B.1.258.170.00104
ORF1ab/nsp3485T485SActTct1010P.10.000158
ORF1ab/nsp3485T485IaCtaTt99AY.440.000055
ORF1ab/nsp3485T485TacTacA79AY.440.000043
ORF1ab/nsp3485T485TacTacC29AY.440.000012
ORF1ab/nsp3485T485IaCtaTt99AY.50.000186
ORF1ab/nsp3485T485IaCtaTt99B.10.000082
ORF1ab/nsp3485T485IaCtaTt99B.1.5250.001018
ORF1ab/nsp3485T485IaCtaTt88AY.1140.001849
ORF1ab/nsp3485T485IaCtaTt88AY.390.000198
ORF1ab/nsp3485T485AActGct88AY.4.2.10.001192
ORF1ab/nsp3485T485TacTacA88B.1.20.00007
ORF1ab/nsp3485T485delACT---77B.1.1.70.000006
ORF1ab/nsp3485T485IaCtaTt77B.1.36.250.015453
ORF1ab/nsp3485T485AActGct560.277778
ORF1ab/nsp3485T485AAcTGcC160.055556
ORF1ab/nsp3485T485del1Act-ct46All0.000001
ORF1ab/nsp3485T485del1acTac-16All0
ORF1ab/nsp3485T485del1AcTGc-16All0
ORF1ab/nsp3485T485IaCtaTt66AY.39.10.000238
ORF1ab/nsp3485T485TacTacA66AY.7.10.000676
ORF1ab/nsp3485T485IaCtaTt66B.1.3510.000178
ORF1ab/nsp3485T485IaCtaTt66B.1.6370.000438
ORF1ab/nsp3485T485AActGct66P.10.000095
ORF1ab/nsp3485T485IaCtaTt55AY.1180.000313
ORF1ab/nsp3485T485IaCtaTt55AY.540.000477
ORF1ab/nsp3485T485IaCtaTt55AY.98.10.000242
ORF1ab/nsp3485T485AActGct55B.1.1.70.000004
ORF1ab/nsp3485T485IaCtaTt55Q.10.000632
ORF1ab/nsp3485T485delACT---44AY.1200.000149
ORF1ab/nsp3485T485TacTacA34AY.420.000121
ORF1ab/nsp3485T485TacTacC14AY.420.00004
ORF1ab/nsp3485T485TacTacC24B.1.10.000036
ORF1ab/nsp3485T485TacTacA24B.1.10.000036
ORF1ab/nsp3485T485IaCtaTt44B.1.1.1980.005874
ORF1ab/nsp3485T485IaCtaTt44B.1.1.5190.000159
ORF1ab/nsp3485T485IaCtaTt44B.1.1600.000125
ORF1ab/nsp3485T485IaCtaTt44B.1.360.000584
ORF1ab/nsp3485T485IaCtaTt44B.1.5960.000349
ORF1ab/nsp3485T485TacTacC24B.1.6210.000177
ORF1ab/nsp3485T485TacTacA24B.1.6210.000177
ORF1ab/nsp3485T485PActCct33All0.000001
ORF1ab/nsp3485T485TacTacC33AY.1030.000019
ORF1ab/nsp3485T485TacTacC33AY.1190.000106
ORF1ab/nsp3485T485IaCtaTt33AY.1200.000112
ORF1ab/nsp3485T485TacTacC33AY.250.000018
ORF1ab/nsp3485T485IaCtaTt33AY.4.50.000322
ORF1ab/nsp3485T485AActGct33AY.430.000013
ORF1ab/nsp3485T485AActGct33AY.440.000018
ORF1ab/nsp3485T485IaCtaTt33AY.450.000365
ORF1ab/nsp3485T485IaCtaTt33B.1.10.000054
ORF1ab/nsp3485T485IaCtaTt33B.1.1.2140.000166
ORF1ab/nsp3485T485TacTacA33B.1.1.2840.000322
ORF1ab/nsp3485T485IaCtaTt33B.1.1.3170.001235
ORF1ab/nsp3485T485IaCtaTt33B.1.1.3180.000905
ORF1ab/nsp3485T485del1Act-ct33B.1.1.70.000003
ORF1ab/nsp3485T485TacTacC33B.1.160.160.002788
ORF1ab/nsp3485T485IaCtaTt33B.1.177.70.000495
ORF1ab/nsp3485T485AActGct33B.1.177.80.002257
ORF1ab/nsp3485T485IaCtaTt33B.1.2210.000213
ORF1ab/nsp3485T485IaCtaTt33B.1.258.170.000312
ORF1ab/nsp3485T485IaCtaTt33B.1.4740.005703
ORF1ab/nsp3485T485IaCtaTt33B.1.5260.000071
ORF1ab/nsp3485T485NaCtaAt33B.1.617.20.000011
ORF1ab/nsp3485T485IaCtaTt33Q.80.000495
ORF1ab/nsp3485T485GACtGGt220.111111
ORF1ab/nsp3485T485delACT---220.111111
ORF1ab/nsp3485T485IaCTaTC120.055556
ORF1ab/nsp3485T485IaCtaTt120.055556
ORF1ab/nsp3485T485VACtGTt120.055556
ORF1ab/nsp3485T485VACTGTC120.055556
ORF1ab/nsp3485T485KaCTaAG22All0
ORF1ab/nsp3485T485GACtGGt22All0
ORF1ab/nsp3485T485del2aCTa--12All0
ORF1ab/nsp3485T485VACTGTC12All0
ORF1ab/nsp3485T485del2ACt--t12All0
ORF1ab/nsp3485T485VACtGTt12All0
ORF1ab/nsp3485T485IaCtaTt22AY.1000.000092
ORF1ab/nsp3485T485TacTacC12AY.1000.000046
ORF1ab/nsp3485T485TacTacA12AY.1000.000046
ORF1ab/nsp3485T485AActGct22AY.1130.000285
ORF1ab/nsp3485T485IaCtaTt22AY.116.10.000623
ORF1ab/nsp3485T485TacTacC22AY.1200.000074
ORF1ab/nsp3485T485IaCtaTt22AY.230.000139
ORF1ab/nsp3485T485IaCtaTt22AY.290.000032
ORF1ab/nsp3485T485IaCtaTt22AY.330.000134
ORF1ab/nsp3485T485TacTacC22AY.390.000049
ORF1ab/nsp3485T485delACT---22AY.40.000003
ORF1ab/nsp3485T485TacTacA22AY.4.20.000043
ORF1ab/nsp3485T485NaCtaAt22AY.430.000009
ORF1ab/nsp3485T485delACT---22AY.430.000009
ORF1ab/nsp3485T485KaCTaAG22AY.430.000009
ORF1ab/nsp3485T485IaCtaTt22AY.480.00093
ORF1ab/nsp3485T485IaCtaTt22AY.900.001369
ORF1ab/nsp3485T485IaCtaTt22AZ.20.001642
ORF1ab/nsp3485T485IaCtaTt22AZ.30.00304
ORF1ab/nsp3485T485delACT---22B.10.000018
ORF1ab/nsp3485T485IaCtaTt22B.1.1.2220.000408
ORF1ab/nsp3485T485IaCtaTt22B.1.1.4340.000697
ORF1ab/nsp3485T485PActCct22B.1.1.70.000002
ORF1ab/nsp3485T485IaCtaTt22B.1.160.160.001859
ORF1ab/nsp3485T485IaCtaTt22B.1.177.210.000153
ORF1ab/nsp3485T485IaCtaTt22B.1.177.60.001953
ORF1ab/nsp3485T485TacTacC22B.1.2210.000142
ORF1ab/nsp3485T485IaCtaTt22B.1.221.10.005814
ORF1ab/nsp3485T485IaCtaTt22B.1.2430.000139
ORF1ab/nsp3485T485TacTacA22B.1.2580.000133
ORF1ab/nsp3485T485TacTacA22C.360.001821
ORF1ab/nsp3485T485TacTacC22C.370.000232
ORF1ab/nsp3485T485IaCtaTt22Q.20.001227
ORF1ab/nsp3485T485TacTacC110.055556
ORF1ab/nsp3485T485SActTct11A.10.000282
ORF1ab/nsp3485T485IaCtaTt11A.2.30.004739
ORF1ab/nsp3485T485LACTCTC11All0
ORF1ab/nsp3485T485del2ACt--t11AY.1030.000006
ORF1ab/nsp3485T485SaCtaGt11AY.1090.00074
ORF1ab/nsp3485T485IaCtaTt11AY.1110.000183
ORF1ab/nsp3485T485AActGct11AY.1160.000287
ORF1ab/nsp3485T485TacTacC11AY.1170.000085
ORF1ab/nsp3485T485AActGct11AY.1180.000063
ORF1ab/nsp3485T485TacTacC11AY.1210.000135
ORF1ab/nsp3485T485IaCtaTt11AY.200.000039
ORF1ab/nsp3485T485AActGct11AY.200.000039
ORF1ab/nsp3485T485TacTacC11AY.240.000431
ORF1ab/nsp3485T485IaCtaTt11AY.260.000028
ORF1ab/nsp3485T485AActGct11AY.290.000016
ORF1ab/nsp3485T485AActGct11AY.30.00001
ORF1ab/nsp3485T485IaCtaTt11AY.3.10.000085
ORF1ab/nsp3485T485TacTacC11AY.320.000532
ORF1ab/nsp3485T485TacTacC11AY.34.10.00051
ORF1ab/nsp3485T485TacTacC11AY.370.000316
ORF1ab/nsp3485T485NaCtaAt11AY.40.000002
ORF1ab/nsp3485T485delACT---11AY.4.50.000107
ORF1ab/nsp3485T485IaCtaTt11AY.420.00004
ORF1ab/nsp3485T485TacTacC11AY.450.000122
ORF1ab/nsp3485T485TacTacC11AY.46.50.000198
ORF1ab/nsp3485T485IaCtaTt11AY.46.50.000198
ORF1ab/nsp3485T485TacTacC11AY.470.000031
ORF1ab/nsp3485T485AActGct11AY.470.000031
ORF1ab/nsp3485T485IaCtaTt11AY.5.30.000337
ORF1ab/nsp3485T485IaCtaTt11AY.5.40.000277
ORF1ab/nsp3485T485AActGct11AY.590.00053
ORF1ab/nsp3485T485IaCtaTt11AY.60.000041
ORF1ab/nsp3485T485delACT---11AY.610.000105
ORF1ab/nsp3485T485NaCtaAt11AY.670.000464
ORF1ab/nsp3485T485LACTCTC11AY.750.000056
ORF1ab/nsp3485T485IaCtaTt11AY.820.001357
ORF1ab/nsp3485T485TacTacC11AY.890.004902
ORF1ab/nsp3485T485IaCtaTt11AY.9.10.000084
ORF1ab/nsp3485T485SActTct11AY.98.10.000048
ORF1ab/nsp3485T485delACT---11AY.990.001049
ORF1ab/nsp3485T485NaCtaAt11AY.99.20.000092
ORF1ab/nsp3485T485TacTacC11B.10.000009
ORF1ab/nsp3485T485NaCtaAt11B.10.000009
ORF1ab/nsp3485T485del1AcTGc-11B.1.10.000018
ORF1ab/nsp3485T485TacTacC11B.1.1.2220.000204
ORF1ab/nsp3485T485TacTacA11B.1.1.250.000569
ORF1ab/nsp3485T485IaCtaTt11B.1.1.2580.003257
ORF1ab/nsp3485T485TacTacC11B.1.1.2690.001353
ORF1ab/nsp3485T485IaCtaTt11B.1.1.280.000311
ORF1ab/nsp3485T485TacTacC11B.1.1.3060.000438
ORF1ab/nsp3485T485TacTacC11B.1.1.3350.012987
ORF1ab/nsp3485T485IaCtaTt11B.1.1.3770.001381
ORF1ab/nsp3485T485TacTacA11B.1.1.4330.001425
ORF1ab/nsp3485T485IaCtaTt11B.1.1.5070.008696
ORF1ab/nsp3485T485delACT---11B.1.1.5190.00004
ORF1ab/nsp3485T485TacTacC11B.1.1.5260.003546
ORF1ab/nsp3485T485TacTacA11B.1.1.700.000341
ORF1ab/nsp3485T485TacTacA11B.1.1600.000031
ORF1ab/nsp3485T485TacTacC11B.1.1770.000013
ORF1ab/nsp3485T485del1Act-ct11B.1.177.110.001698
ORF1ab/nsp3485T485IaCtaTt11B.1.177.150.000631
ORF1ab/nsp3485T485TacTacA11B.1.177.230.003236
ORF1ab/nsp3485T485IaCtaTt11B.1.177.440.000519
ORF1ab/nsp3485T485IaCtaTt11B.1.177.580.001332
ORF1ab/nsp3485T485AActGct11B.1.177.650.000665
ORF1ab/nsp3485T485TacTacC11B.1.177.670.007634
ORF1ab/nsp3485T485delACT---11B.1.177.790.002342
ORF1ab/nsp3485T485IaCtaTt11B.1.177.820.000477
ORF1ab/nsp3485T485IaCtaTt11B.1.177.830.001481
ORF1ab/nsp3485T485AActGct11B.1.20.000009
ORF1ab/nsp3485T485delACT---11B.1.20.000009
ORF1ab/nsp3485T485IaCtaTt11B.1.2340.000132
ORF1ab/nsp3485T485TacTacC11B.1.2430.00007
ORF1ab/nsp3485T485IaCtaTt11B.1.258.140.00098
ORF1ab/nsp3485T485TacTacC11B.1.258.170.000104
ORF1ab/nsp3485T485IaCtaTt11B.1.3110.000275
ORF1ab/nsp3485T485AActGct11B.1.3200.001245
ORF1ab/nsp3485T485TacTacA11B.1.3510.00003
ORF1ab/nsp3485T485IaCtaTt11B.1.351.30.000876
ORF1ab/nsp3485T485delACT---11B.1.360.000146
ORF1ab/nsp3485T485IaCtaTt11B.1.36.180.00042
ORF1ab/nsp3485T485IaCtaTt11B.1.3620.001541
ORF1ab/nsp3485T485TacTacC11B.1.3770.004566
ORF1ab/nsp3485T485IaCtaTt11B.1.4270.00005
ORF1ab/nsp3485T485TacTacC11B.1.4270.00005
ORF1ab/nsp3485T485delACT---11B.1.4290.000024
ORF1ab/nsp3485T485AActGct11B.1.4620.007246
ORF1ab/nsp3485T485TacTacC11B.1.4730.019231
ORF1ab/nsp3485T485TacTacC11B.1.5230.002451
ORF1ab/nsp3485T485TacTacC11B.1.5260.000024
ORF1ab/nsp3485T485IaCtaTt11B.1.5610.000397
ORF1ab/nsp3485T485IaCtaTt11B.1.5750.000303
ORF1ab/nsp3485T485IaCtaTt11B.1.5760.000907
ORF1ab/nsp3485T485AActGct11B.1.5770.000687
ORF1ab/nsp3485T485AActGct11B.1.5950.000261
ORF1ab/nsp3485T485del2aCTa--11B.1.5960.000087
ORF1ab/nsp3485T485PActCct11B.1.6090.000479
ORF1ab/nsp3485T485del1acTac-11B.1.617.20.000004
ORF1ab/nsp3485T485delACT---11B.1.617.20.000004
ORF1ab/nsp3485T485IaCtaTt11B.1.6200.000946
ORF1ab/nsp3485T485IaCtaTt11B.1.6210.000089
ORF1ab/nsp3485T485delACT---11B.570.015152
ORF1ab/nsp3485T485IaCtaTt11N.20.038462
ORF1ab/nsp3485T485TacTacC11P.10.000016
ORF1ab/nsp3485T485delACT---11P.10.000016
ORF1ab/nsp3485T485IaCtaTt11P.1.120.000484
ORF1ab/nsp3485T485AActGct11P.1.120.000484
ORF1ab/nsp3485T485SaCtaGt11P.1.140.000048
ORF1ab/nsp3485T485IaCtaTt11P.1.150.000232
ORF1ab/nsp3485T485IaCtaTt11P.1.170.000162
ORF1ab/nsp3485T485IaCtaTt11P.1.80.004785
ORF1ab/nsp3485T485TacTacC11P.30.001595
ORF1ab/nsp3485T485delACT---11R.10.00009
ORF1ab/nsp3485T485TacTacC11R.10.00009
ORF1ab/nsp3485T485delACT---11U.30.003861
ORF1ab/nsp3485T485IaCtaTt11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.