CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 485

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3485T485IT1303InonsynaCtaTt137313720.9992724172-4174
ORF1ab/nsp3485T485IT1303InonsynaCTaTC137310.0007283324172-4174
ORF1ab/nsp3485T485TT1303TsynacTacC2361870.7923734172-4174
ORF1ab/nsp3485T485TT1303TsynacTacA236470.1991534172-4174
ORF1ab/nsp3485T485TT1303TsynacTacG23620.008474584172-4174
ORF1ab/nsp3485T485AT1303AnonsynActGct50490.984172-4174
ORF1ab/nsp3485T485AT1303AnonsynAcTGcC5010.024172-4174
ORF1ab/nsp3485T485NT1303NnonsynaCtaAt444414172-4174
ORF1ab/nsp3485T485delT1303deldelACT---323214172-4174
ORF1ab/nsp3485T485ST1303SnonsynActTct14120.8571434172-4174
ORF1ab/nsp3485T485ST1303SnonsynaCtaGt1420.1428574172-4174
ORF1ab/nsp3485T485del1T1303del1delAct-ct640.6666674172-4174
ORF1ab/nsp3485T485del1T1303del1delacTac-610.1666674172-4174
ORF1ab/nsp3485T485del1T1303del1delAcTGc-610.1666674172-4174
ORF1ab/nsp3485T485PT1303PnonsynActCct3314172-4174
ORF1ab/nsp3485T485GT1303GnonsynACtGGt2214172-4174
ORF1ab/nsp3485T485KT1303KnonsynaCTaAG2214172-4174
ORF1ab/nsp3485T485del2T1303del2delaCTa--210.54172-4174
ORF1ab/nsp3485T485VT1303VnonsynACtGTt210.54172-4174
ORF1ab/nsp3485T485VT1303VnonsynACTGTC210.54172-4174
ORF1ab/nsp3485T485del2T1303del2delACt--t210.54172-4174
ORF1ab/nsp3485T485LT1303LnonsynACTCTC1114172-4174

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3485T485IaCtaTt13721373All0.000262
ORF1ab/nsp3485T485IaCTaTC11373All0
ORF1ab/nsp3485T485IaCtaTt729729B.1.1.70.000653
ORF1ab/nsp3485T485TacTacC187236All0.000036
ORF1ab/nsp3485T485TacTacA47236All0.000009
ORF1ab/nsp3485T485TacTacG2236All0
ORF1ab/nsp3485T485IaCtaTt107107AY.40.000167
ORF1ab/nsp3485T485IaCtaTt7777AY.250.000463
ORF1ab/nsp3485T485AActGct4950All0.000009
ORF1ab/nsp3485T485AAcTGcC150All0
ORF1ab/nsp3485T485NaCtaAt4444All0.000008
ORF1ab/nsp3485T485TacTacC3536B.1.617.20.000132
ORF1ab/nsp3485T485TacTacG136B.1.617.20.000004
ORF1ab/nsp3485T485IaCtaTt3333B.1.1770.000435
ORF1ab/nsp3485T485IaCtaTt3333B.1.20.000291
ORF1ab/nsp3485T485delACT---3232All0.000006
ORF1ab/nsp3485T485IaCtaTt3030AY.1190.001059
ORF1ab/nsp3485T485IaCtaTt2828AY.1030.000174
ORF1ab/nsp3485T485NaCtaAt2525B.1.1.70.000022
ORF1ab/nsp3485T485TacTacC2424AY.40.000037
ORF1ab/nsp3485T485TacTacC2224AY.430.000097
ORF1ab/nsp3485T485TacTacG124AY.430.000004
ORF1ab/nsp3485T485TacTacA124AY.430.000004
ORF1ab/nsp3485T485TacTacC2022B.1.1.70.000018
ORF1ab/nsp3485T485TacTacA222B.1.1.70.000002
ORF1ab/nsp3485T485IaCtaTt1818AY.430.00008
ORF1ab/nsp3485T485TacTacC1818B.1.1.2420.782609
ORF1ab/nsp3485T485IaCtaTt1717AY.30.000169
ORF1ab/nsp3485T485IaCtaTt1616B.1.4290.000376
ORF1ab/nsp3485T485IaCtaTt1616P.1.10.005083
ORF1ab/nsp3485T485IaCtaTt1515B.1.617.20.000056
ORF1ab/nsp3485T485SActTct1214All0.000002
ORF1ab/nsp3485T485SaCtaGt214All0
ORF1ab/nsp3485T485IaCtaTt1212P.10.000189
ORF1ab/nsp3485T485IaCtaTt1111AY.1020.000292
ORF1ab/nsp3485T485TacTacC1111AY.30.000109
ORF1ab/nsp3485T485NaCtaAt1010B.1.258.170.00104
ORF1ab/nsp3485T485SActTct1010P.10.000158
ORF1ab/nsp3485T485IaCtaTt99AY.440.000055
ORF1ab/nsp3485T485TacTacA79AY.440.000043
ORF1ab/nsp3485T485TacTacC29AY.440.000012
ORF1ab/nsp3485T485IaCtaTt99AY.50.000186
ORF1ab/nsp3485T485IaCtaTt99B.10.000082
ORF1ab/nsp3485T485IaCtaTt99B.1.5250.001018
ORF1ab/nsp3485T485IaCtaTt88AY.1140.001849
ORF1ab/nsp3485T485IaCtaTt88AY.390.000198
ORF1ab/nsp3485T485AActGct88AY.4.2.10.001192
ORF1ab/nsp3485T485TacTacA88B.1.20.00007
ORF1ab/nsp3485T485delACT---77B.1.1.70.000006
ORF1ab/nsp3485T485IaCtaTt77B.1.36.250.015453
ORF1ab/nsp3485T485AActGct560.277778
ORF1ab/nsp3485T485AAcTGcC160.055556
ORF1ab/nsp3485T485del1Act-ct46All0.000001
ORF1ab/nsp3485T485del1acTac-16All0
ORF1ab/nsp3485T485del1AcTGc-16All0
ORF1ab/nsp3485T485IaCtaTt66AY.39.10.000238
ORF1ab/nsp3485T485TacTacA66AY.7.10.000676
ORF1ab/nsp3485T485IaCtaTt66B.1.3510.000178
ORF1ab/nsp3485T485IaCtaTt66B.1.6370.000438
ORF1ab/nsp3485T485AActGct66P.10.000095
ORF1ab/nsp3485T485IaCtaTt55AY.1180.000313
ORF1ab/nsp3485T485IaCtaTt55AY.540.000477
ORF1ab/nsp3485T485IaCtaTt55AY.98.10.000242
ORF1ab/nsp3485T485AActGct55B.1.1.70.000004
ORF1ab/nsp3485T485IaCtaTt55Q.10.000632
ORF1ab/nsp3485T485delACT---44AY.1200.000149
ORF1ab/nsp3485T485TacTacA34AY.420.000121
ORF1ab/nsp3485T485TacTacC14AY.420.00004
ORF1ab/nsp3485T485TacTacC24B.1.10.000036
ORF1ab/nsp3485T485TacTacA24B.1.10.000036
ORF1ab/nsp3485T485IaCtaTt44B.1.1.1980.005874
ORF1ab/nsp3485T485IaCtaTt44B.1.1.5190.000159
ORF1ab/nsp3485T485IaCtaTt44B.1.1600.000125
ORF1ab/nsp3485T485IaCtaTt44B.1.360.000584
ORF1ab/nsp3485T485IaCtaTt44B.1.5960.000349
ORF1ab/nsp3485T485TacTacC24B.1.6210.000177
ORF1ab/nsp3485T485TacTacA24B.1.6210.000177
ORF1ab/nsp3485T485PActCct33All0.000001
ORF1ab/nsp3485T485TacTacC33AY.1030.000019
ORF1ab/nsp3485T485TacTacC33AY.1190.000106
ORF1ab/nsp3485T485IaCtaTt33AY.1200.000112
ORF1ab/nsp3485T485TacTacC33AY.250.000018
ORF1ab/nsp3485T485IaCtaTt33AY.4.50.000322
ORF1ab/nsp3485T485AActGct33AY.430.000013
ORF1ab/nsp3485T485AActGct33AY.440.000018
ORF1ab/nsp3485T485IaCtaTt33AY.450.000365
ORF1ab/nsp3485T485IaCtaTt33B.1.10.000054
ORF1ab/nsp3485T485IaCtaTt33B.1.1.2140.000166
ORF1ab/nsp3485T485TacTacA33B.1.1.2840.000322
ORF1ab/nsp3485T485IaCtaTt33B.1.1.3170.001235
ORF1ab/nsp3485T485IaCtaTt33B.1.1.3180.000905
ORF1ab/nsp3485T485del1Act-ct33B.1.1.70.000003
ORF1ab/nsp3485T485TacTacC33B.1.160.160.002788
ORF1ab/nsp3485T485IaCtaTt33B.1.177.70.000495
ORF1ab/nsp3485T485AActGct33B.1.177.80.002257
ORF1ab/nsp3485T485IaCtaTt33B.1.2210.000213
ORF1ab/nsp3485T485IaCtaTt33B.1.258.170.000312
ORF1ab/nsp3485T485IaCtaTt33B.1.4740.005703
ORF1ab/nsp3485T485IaCtaTt33B.1.5260.000071
ORF1ab/nsp3485T485NaCtaAt33B.1.617.20.000011
ORF1ab/nsp3485T485IaCtaTt33Q.80.000495
ORF1ab/nsp3485T485GACtGGt220.111111
ORF1ab/nsp3485T485delACT---220.111111
ORF1ab/nsp3485T485IaCTaTC120.055556
ORF1ab/nsp3485T485IaCtaTt120.055556
ORF1ab/nsp3485T485VACtGTt120.055556
ORF1ab/nsp3485T485VACTGTC120.055556
ORF1ab/nsp3485T485KaCTaAG22All0
ORF1ab/nsp3485T485GACtGGt22All0
ORF1ab/nsp3485T485del2aCTa--12All0
ORF1ab/nsp3485T485VACTGTC12All0
ORF1ab/nsp3485T485del2ACt--t12All0
ORF1ab/nsp3485T485VACtGTt12All0
ORF1ab/nsp3485T485IaCtaTt22AY.1000.000092
ORF1ab/nsp3485T485TacTacC12AY.1000.000046
ORF1ab/nsp3485T485TacTacA12AY.1000.000046
ORF1ab/nsp3485T485AActGct22AY.1130.000285
ORF1ab/nsp3485T485IaCtaTt22AY.116.10.000623
ORF1ab/nsp3485T485TacTacC22AY.1200.000074
ORF1ab/nsp3485T485IaCtaTt22AY.230.000139
ORF1ab/nsp3485T485IaCtaTt22AY.290.000032
ORF1ab/nsp3485T485IaCtaTt22AY.330.000134
ORF1ab/nsp3485T485TacTacC22AY.390.000049
ORF1ab/nsp3485T485delACT---22AY.40.000003
ORF1ab/nsp3485T485TacTacA22AY.4.20.000043
ORF1ab/nsp3485T485NaCtaAt22AY.430.000009
ORF1ab/nsp3485T485delACT---22AY.430.000009
ORF1ab/nsp3485T485KaCTaAG22AY.430.000009
ORF1ab/nsp3485T485IaCtaTt22AY.480.00093
ORF1ab/nsp3485T485IaCtaTt22AY.900.001369
ORF1ab/nsp3485T485IaCtaTt22AZ.20.001642
ORF1ab/nsp3485T485IaCtaTt22AZ.30.00304
ORF1ab/nsp3485T485delACT---22B.10.000018
ORF1ab/nsp3485T485IaCtaTt22B.1.1.2220.000408
ORF1ab/nsp3485T485IaCtaTt22B.1.1.4340.000697
ORF1ab/nsp3485T485PActCct22B.1.1.70.000002
ORF1ab/nsp3485T485IaCtaTt22B.1.160.160.001859
ORF1ab/nsp3485T485IaCtaTt22B.1.177.210.000153
ORF1ab/nsp3485T485IaCtaTt22B.1.177.60.001953
ORF1ab/nsp3485T485TacTacC22B.1.2210.000142
ORF1ab/nsp3485T485IaCtaTt22B.1.221.10.005814
ORF1ab/nsp3485T485IaCtaTt22B.1.2430.000139
ORF1ab/nsp3485T485TacTacA22B.1.2580.000133
ORF1ab/nsp3485T485TacTacA22C.360.001821
ORF1ab/nsp3485T485TacTacC22C.370.000232
ORF1ab/nsp3485T485IaCtaTt22Q.20.001227
ORF1ab/nsp3485T485TacTacC110.055556
ORF1ab/nsp3485T485SActTct11A.10.000282
ORF1ab/nsp3485T485IaCtaTt11A.2.30.004739
ORF1ab/nsp3485T485LACTCTC11All0
ORF1ab/nsp3485T485del2ACt--t11AY.1030.000006
ORF1ab/nsp3485T485SaCtaGt11AY.1090.00074
ORF1ab/nsp3485T485IaCtaTt11AY.1110.000183
ORF1ab/nsp3485T485AActGct11AY.1160.000287
ORF1ab/nsp3485T485TacTacC11AY.1170.000085
ORF1ab/nsp3485T485AActGct11AY.1180.000063
ORF1ab/nsp3485T485TacTacC11AY.1210.000135
ORF1ab/nsp3485T485IaCtaTt11AY.200.000039
ORF1ab/nsp3485T485AActGct11AY.200.000039
ORF1ab/nsp3485T485TacTacC11AY.240.000431
ORF1ab/nsp3485T485IaCtaTt11AY.260.000028
ORF1ab/nsp3485T485AActGct11AY.290.000016
ORF1ab/nsp3485T485AActGct11AY.30.00001
ORF1ab/nsp3485T485IaCtaTt11AY.3.10.000085
ORF1ab/nsp3485T485TacTacC11AY.320.000532
ORF1ab/nsp3485T485TacTacC11AY.34.10.00051
ORF1ab/nsp3485T485TacTacC11AY.370.000316
ORF1ab/nsp3485T485NaCtaAt11AY.40.000002
ORF1ab/nsp3485T485delACT---11AY.4.50.000107
ORF1ab/nsp3485T485IaCtaTt11AY.420.00004
ORF1ab/nsp3485T485TacTacC11AY.450.000122
ORF1ab/nsp3485T485TacTacC11AY.46.50.000198
ORF1ab/nsp3485T485IaCtaTt11AY.46.50.000198
ORF1ab/nsp3485T485TacTacC11AY.470.000031
ORF1ab/nsp3485T485AActGct11AY.470.000031
ORF1ab/nsp3485T485IaCtaTt11AY.5.30.000337
ORF1ab/nsp3485T485IaCtaTt11AY.5.40.000277
ORF1ab/nsp3485T485AActGct11AY.590.00053
ORF1ab/nsp3485T485IaCtaTt11AY.60.000041
ORF1ab/nsp3485T485delACT---11AY.610.000105
ORF1ab/nsp3485T485NaCtaAt11AY.670.000464
ORF1ab/nsp3485T485LACTCTC11AY.750.000056
ORF1ab/nsp3485T485IaCtaTt11AY.820.001357
ORF1ab/nsp3485T485TacTacC11AY.890.004902
ORF1ab/nsp3485T485IaCtaTt11AY.9.10.000084
ORF1ab/nsp3485T485SActTct11AY.98.10.000048
ORF1ab/nsp3485T485delACT---11AY.990.001049
ORF1ab/nsp3485T485NaCtaAt11AY.99.20.000092
ORF1ab/nsp3485T485TacTacC11B.10.000009
ORF1ab/nsp3485T485NaCtaAt11B.10.000009
ORF1ab/nsp3485T485del1AcTGc-11B.1.10.000018
ORF1ab/nsp3485T485TacTacC11B.1.1.2220.000204
ORF1ab/nsp3485T485TacTacA11B.1.1.250.000569
ORF1ab/nsp3485T485IaCtaTt11B.1.1.2580.003257
ORF1ab/nsp3485T485TacTacC11B.1.1.2690.001353
ORF1ab/nsp3485T485IaCtaTt11B.1.1.280.000311
ORF1ab/nsp3485T485TacTacC11B.1.1.3060.000438
ORF1ab/nsp3485T485TacTacC11B.1.1.3350.012987
ORF1ab/nsp3485T485IaCtaTt11B.1.1.3770.001381
ORF1ab/nsp3485T485TacTacA11B.1.1.4330.001425
ORF1ab/nsp3485T485IaCtaTt11B.1.1.5070.008696
ORF1ab/nsp3485T485delACT---11B.1.1.5190.00004
ORF1ab/nsp3485T485TacTacC11B.1.1.5260.003546
ORF1ab/nsp3485T485TacTacA11B.1.1.700.000341
ORF1ab/nsp3485T485TacTacA11B.1.1600.000031
ORF1ab/nsp3485T485TacTacC11B.1.1770.000013
ORF1ab/nsp3485T485del1Act-ct11B.1.177.110.001698
ORF1ab/nsp3485T485IaCtaTt11B.1.177.150.000631
ORF1ab/nsp3485T485TacTacA11B.1.177.230.003236
ORF1ab/nsp3485T485IaCtaTt11B.1.177.440.000519
ORF1ab/nsp3485T485IaCtaTt11B.1.177.580.001332
ORF1ab/nsp3485T485AActGct11B.1.177.650.000665
ORF1ab/nsp3485T485TacTacC11B.1.177.670.007634
ORF1ab/nsp3485T485delACT---11B.1.177.790.002342
ORF1ab/nsp3485T485IaCtaTt11B.1.177.820.000477
ORF1ab/nsp3485T485IaCtaTt11B.1.177.830.001481
ORF1ab/nsp3485T485AActGct11B.1.20.000009
ORF1ab/nsp3485T485delACT---11B.1.20.000009
ORF1ab/nsp3485T485IaCtaTt11B.1.2340.000132
ORF1ab/nsp3485T485TacTacC11B.1.2430.00007
ORF1ab/nsp3485T485IaCtaTt11B.1.258.140.00098
ORF1ab/nsp3485T485TacTacC11B.1.258.170.000104
ORF1ab/nsp3485T485IaCtaTt11B.1.3110.000275
ORF1ab/nsp3485T485AActGct11B.1.3200.001245
ORF1ab/nsp3485T485TacTacA11B.1.3510.00003
ORF1ab/nsp3485T485IaCtaTt11B.1.351.30.000876
ORF1ab/nsp3485T485delACT---11B.1.360.000146
ORF1ab/nsp3485T485IaCtaTt11B.1.36.180.00042
ORF1ab/nsp3485T485IaCtaTt11B.1.3620.001541
ORF1ab/nsp3485T485TacTacC11B.1.3770.004566
ORF1ab/nsp3485T485IaCtaTt11B.1.4270.00005
ORF1ab/nsp3485T485TacTacC11B.1.4270.00005
ORF1ab/nsp3485T485delACT---11B.1.4290.000024
ORF1ab/nsp3485T485AActGct11B.1.4620.007246
ORF1ab/nsp3485T485TacTacC11B.1.4730.019231
ORF1ab/nsp3485T485TacTacC11B.1.5230.002451
ORF1ab/nsp3485T485TacTacC11B.1.5260.000024
ORF1ab/nsp3485T485IaCtaTt11B.1.5610.000397
ORF1ab/nsp3485T485IaCtaTt11B.1.5750.000303
ORF1ab/nsp3485T485IaCtaTt11B.1.5760.000907
ORF1ab/nsp3485T485AActGct11B.1.5770.000687
ORF1ab/nsp3485T485AActGct11B.1.5950.000261
ORF1ab/nsp3485T485del2aCTa--11B.1.5960.000087
ORF1ab/nsp3485T485PActCct11B.1.6090.000479
ORF1ab/nsp3485T485del1acTac-11B.1.617.20.000004
ORF1ab/nsp3485T485delACT---11B.1.617.20.000004
ORF1ab/nsp3485T485IaCtaTt11B.1.6200.000946
ORF1ab/nsp3485T485IaCtaTt11B.1.6210.000089
ORF1ab/nsp3485T485delACT---11B.570.015152
ORF1ab/nsp3485T485IaCtaTt11N.20.038462
ORF1ab/nsp3485T485TacTacC11P.10.000016
ORF1ab/nsp3485T485delACT---11P.10.000016
ORF1ab/nsp3485T485IaCtaTt11P.1.120.000484
ORF1ab/nsp3485T485AActGct11P.1.120.000484
ORF1ab/nsp3485T485SaCtaGt11P.1.140.000048
ORF1ab/nsp3485T485IaCtaTt11P.1.150.000232
ORF1ab/nsp3485T485IaCtaTt11P.1.170.000162
ORF1ab/nsp3485T485IaCtaTt11P.1.80.004785
ORF1ab/nsp3485T485TacTacC11P.30.001595
ORF1ab/nsp3485T485delACT---11R.10.00009
ORF1ab/nsp3485T485TacTacC11R.10.00009
ORF1ab/nsp3485T485delACT---11U.30.003861
ORF1ab/nsp3485T485IaCtaTt11W.10.008696