CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 482

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3482V482VV1300VsyngtTgtC5044440.8809524163-4165
ORF1ab/nsp3482V482VV1300VsyngtTgtA504520.1031754163-4165
ORF1ab/nsp3482V482VV1300VsyngtTgtG50480.0158734163-4165
ORF1ab/nsp3482V482AV1300AnonsyngTtgCt2332310.9914164163-4165
ORF1ab/nsp3482V482AV1300AnonsyngTTgCG23310.004291854163-4165
ORF1ab/nsp3482V482AV1300AnonsyngTTgCA23310.004291854163-4165
ORF1ab/nsp3482V482delV1300deldelGTT---151514163-4165
ORF1ab/nsp3482V482FV1300FnonsynGttTtt980.8888894163-4165
ORF1ab/nsp3482V482LV1300LnonsynGttCtt970.7777784163-4165
ORF1ab/nsp3482V482LV1300LnonsynGtTTtA910.1111114163-4165
ORF1ab/nsp3482V482LV1300LnonsynGtTTtG910.1111114163-4165
ORF1ab/nsp3482V482FV1300FnonsynGtTTtC910.1111114163-4165
ORF1ab/nsp3482V482IV1300InonsynGttAtt5514163-4165
ORF1ab/nsp3482V482SV1300SnonsynGTTTCA310.3333334163-4165
ORF1ab/nsp3482V482SV1300SnonsynGTTTCG310.3333334163-4165
ORF1ab/nsp3482V482SV1300SnonsynGTtTCt310.3333334163-4165
ORF1ab/nsp3482V482GV1300GnonsyngTtgGt2214163-4165
ORF1ab/nsp3482V482DV1300DnonsyngTtgAt2214163-4165
ORF1ab/nsp3482V482del1V1300del1delGTTAC-210.54163-4165
ORF1ab/nsp3482V482del1V1300del1delgtTgt-210.54163-4165
ORF1ab/nsp3482V482NV1300NnonsynGTTAAC1114163-4165
ORF1ab/nsp3482V482RV1300RnonsynGTTCGC1114163-4165

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3482V482VgtTgtC444504All0.000085
ORF1ab/nsp3482V482VgtTgtA52504All0.00001
ORF1ab/nsp3482V482VgtTgtG8504All0.000002
ORF1ab/nsp3482V482VgtTgtC252252B.1.20.002219
ORF1ab/nsp3482V482AgTtgCt231233All0.000044
ORF1ab/nsp3482V482AgTTgCA1233All0
ORF1ab/nsp3482V482AgTTgCG1233All0
ORF1ab/nsp3482V482AgTtgCt120120B.1.1.70.000107
ORF1ab/nsp3482V482AgTtgCt6262B.1.3570.590476
ORF1ab/nsp3482V482VgtTgtC2125AY.430.000093
ORF1ab/nsp3482V482VgtTgtA325AY.430.000013
ORF1ab/nsp3482V482VgtTgtG125AY.430.000004
ORF1ab/nsp3482V482VgtTgtC1821B.1.1.70.000016
ORF1ab/nsp3482V482VgtTgtA321B.1.1.70.000003
ORF1ab/nsp3482V482VgtTgtC1717B.1.6230.00912
ORF1ab/nsp3482V482VgtTgtC1616B.1.4270.000808
ORF1ab/nsp3482V482VgtTgtC916B.1.617.20.000034
ORF1ab/nsp3482V482VgtTgtA716B.1.617.20.000026
ORF1ab/nsp3482V482delGTT---1515All0.000003
ORF1ab/nsp3482V482VgtTgtC1314AY.40.00002
ORF1ab/nsp3482V482VgtTgtA114AY.40.000002
ORF1ab/nsp3482V482VgtTgtA9100.5
ORF1ab/nsp3482V482VgtTgtG1100.055556
ORF1ab/nsp3482V482AgTtgCt1010B.1.1.700.003411
ORF1ab/nsp3482V482VgtTgtC1010B.1.617.10.00129
ORF1ab/nsp3482V482FGttTtt89All0.000002
ORF1ab/nsp3482V482LGttCtt79All0.000001
ORF1ab/nsp3482V482FGtTTtC19All0
ORF1ab/nsp3482V482LGtTTtA19All0
ORF1ab/nsp3482V482LGtTTtG19All0
ORF1ab/nsp3482V482VgtTgtC59B.10.000046
ORF1ab/nsp3482V482VgtTgtA49B.10.000037
ORF1ab/nsp3482V482AgTtgCt88B.1.258.150.150943
ORF1ab/nsp3482V482VgtTgtC67AY.460.000624
ORF1ab/nsp3482V482VgtTgtA17AY.460.000104
ORF1ab/nsp3482V482VgtTgtC47B.1.10.000073
ORF1ab/nsp3482V482VgtTgtA37B.1.10.000054
ORF1ab/nsp3482V482VgtTgtC77B.1.177.810.001325
ORF1ab/nsp3482V482VgtTgtG56AY.690.000933
ORF1ab/nsp3482V482VgtTgtC16AY.690.000187
ORF1ab/nsp3482V482VgtTgtC56B.1.1770.000066
ORF1ab/nsp3482V482VgtTgtA16B.1.1770.000013
ORF1ab/nsp3482V482IGttAtt55All0.000001
ORF1ab/nsp3482V482AgTtgCt55AY.40.000008
ORF1ab/nsp3482V482VgtTgtC55B.1.1.3370.017986
ORF1ab/nsp3482V482VgtTgtC44AY.1210.000541
ORF1ab/nsp3482V482AgTtgCt44AY.460.000416
ORF1ab/nsp3482V482VgtTgtA44B.1.1600.000125
ORF1ab/nsp3482V482VgtTgtC44B.1.5960.000349
ORF1ab/nsp3482V482AgTTgCA130.055556
ORF1ab/nsp3482V482AgTTgCG130.055556
ORF1ab/nsp3482V482SGTTTCA130.055556
ORF1ab/nsp3482V482AgTtgCt130.055556
ORF1ab/nsp3482V482SGTtTCt130.055556
ORF1ab/nsp3482V482SGTTTCG130.055556
ORF1ab/nsp3482V482SGTTTCG13All0
ORF1ab/nsp3482V482SGTtTCt13All0
ORF1ab/nsp3482V482SGTTTCA13All0
ORF1ab/nsp3482V482VgtTgtC23AY.420.00008
ORF1ab/nsp3482V482VgtTgtA13AY.420.00004
ORF1ab/nsp3482V482LGttCtt33AY.430.000013
ORF1ab/nsp3482V482VgtTgtC33AY.46.40.000494
ORF1ab/nsp3482V482VgtTgtC33AY.5.40.00083
ORF1ab/nsp3482V482VgtTgtC33AY.75.10.000541
ORF1ab/nsp3482V482delGTT---33B.1.1.70.000003
ORF1ab/nsp3482V482LGtTTtA120.055556
ORF1ab/nsp3482V482LGtTTtG120.055556
ORF1ab/nsp3482V482DgTtgAt22All0
ORF1ab/nsp3482V482GgTtgGt22All0
ORF1ab/nsp3482V482del1gtTgt-12All0
ORF1ab/nsp3482V482del1GTTAC-12All0
ORF1ab/nsp3482V482VgtTgtC22AY.390.000049
ORF1ab/nsp3482V482AgTtgCt22AY.430.000009
ORF1ab/nsp3482V482delGTT---22AY.430.000009
ORF1ab/nsp3482V482VgtTgtA22AY.440.000012
ORF1ab/nsp3482V482VgtTgtC22AY.46.60.000144
ORF1ab/nsp3482V482AgTtgCt22AY.60.000082
ORF1ab/nsp3482V482VgtTgtC22AY.610.00021
ORF1ab/nsp3482V482VgtTgtC22AY.9.10.000167
ORF1ab/nsp3482V482VgtTgtC22AY.9.20.000073
ORF1ab/nsp3482V482VgtTgtA12AY.980.000079
ORF1ab/nsp3482V482VgtTgtC12AY.980.000079
ORF1ab/nsp3482V482VgtTgtA12AY.98.10.000048
ORF1ab/nsp3482V482VgtTgtC12AY.98.10.000048
ORF1ab/nsp3482V482IGttAtt22B.10.000018
ORF1ab/nsp3482V482delGTT---22B.10.000018
ORF1ab/nsp3482V482FGttTtt12B.10.000009
ORF1ab/nsp3482V482FGtTTtC12B.10.000009
ORF1ab/nsp3482V482AgTtgCt22B.1.10.000036
ORF1ab/nsp3482V482AgTtgCt22B.1.1770.000026
ORF1ab/nsp3482V482VgtTgtA12B.1.177.440.000519
ORF1ab/nsp3482V482VgtTgtC12B.1.177.440.000519
ORF1ab/nsp3482V482VgtTgtA22B.1.2210.000142
ORF1ab/nsp3482V482VgtTgtA22B.1.5750.000607
ORF1ab/nsp3482V482FGttTtt110.055556
ORF1ab/nsp3482V482VgtTgtC11A.20.000662
ORF1ab/nsp3482V482NGTTAAC11All0
ORF1ab/nsp3482V482RGTTCGC11All0
ORF1ab/nsp3482V482AgTtgCt11AY.1020.000027
ORF1ab/nsp3482V482VgtTgtC11AY.1030.000006
ORF1ab/nsp3482V482IGttAtt11AY.1030.000006
ORF1ab/nsp3482V482AgTtgCt11AY.1110.000183
ORF1ab/nsp3482V482VgtTgtC11AY.1130.000142
ORF1ab/nsp3482V482VgtTgtC11AY.1200.000037
ORF1ab/nsp3482V482VgtTgtC11AY.16.10.00047
ORF1ab/nsp3482V482VgtTgtG11AY.210.001898
ORF1ab/nsp3482V482FGttTtt11AY.250.000006
ORF1ab/nsp3482V482AgTtgCt11AY.250.000006
ORF1ab/nsp3482V482DgTtgAt11AY.250.000006
ORF1ab/nsp3482V482LGttCtt11AY.30.00001
ORF1ab/nsp3482V482VgtTgtC11AY.30.00001
ORF1ab/nsp3482V482VgtTgtC11AY.330.000067
ORF1ab/nsp3482V482AgTtgCt11AY.360.000148
ORF1ab/nsp3482V482AgTtgCt11AY.39.10.00004
ORF1ab/nsp3482V482GgTtgGt11AY.40.000002
ORF1ab/nsp3482V482FGttTtt11AY.40.000002
ORF1ab/nsp3482V482delGTT---11AY.4.50.000107
ORF1ab/nsp3482V482VgtTgtC11AY.410.000294
ORF1ab/nsp3482V482LGttCtt11AY.440.000006
ORF1ab/nsp3482V482VgtTgtC11AY.46.50.000198
ORF1ab/nsp3482V482AgTtgCt11AY.46.60.000072
ORF1ab/nsp3482V482VgtTgtC11AY.470.000031
ORF1ab/nsp3482V482VgtTgtC11AY.510.000909
ORF1ab/nsp3482V482AgTtgCt11AY.540.000095
ORF1ab/nsp3482V482IGttAtt11AY.60.000041
ORF1ab/nsp3482V482del1gtTgt-11AY.610.000105
ORF1ab/nsp3482V482LGttCtt11AY.670.000464
ORF1ab/nsp3482V482VgtTgtC11AY.950.000761
ORF1ab/nsp3482V482del1GTTAC-11AY.990.001049
ORF1ab/nsp3482V482VgtTgtC11B0.000128
ORF1ab/nsp3482V482AgTtgCt11B.10.000009
ORF1ab/nsp3482V482RGTTCGC11B.10.000009
ORF1ab/nsp3482V482GgTtgGt11B.10.000009
ORF1ab/nsp3482V482VgtTgtA11B.1.1.1610.003534
ORF1ab/nsp3482V482FGttTtt11B.1.1.1740.003378
ORF1ab/nsp3482V482IGttAtt11B.1.1.370.000193
ORF1ab/nsp3482V482VgtTgtA11B.1.1.390.00051
ORF1ab/nsp3482V482FGttTtt11B.1.1.4090.002833
ORF1ab/nsp3482V482VgtTgtC11B.1.1.500.000679
ORF1ab/nsp3482V482delGTT---11B.1.1.5190.00004
ORF1ab/nsp3482V482LGttCtt11B.1.1.70.000001
ORF1ab/nsp3482V482FGttTtt11B.1.1.70.000001
ORF1ab/nsp3482V482DgTtgAt11B.1.1.70.000001
ORF1ab/nsp3482V482VgtTgtA11B.1.1570.002985
ORF1ab/nsp3482V482VgtTgtA11B.1.177.310.011494
ORF1ab/nsp3482V482AgTtgCt11B.1.177.40.000211
ORF1ab/nsp3482V482AgTtgCt11B.1.177.440.000519
ORF1ab/nsp3482V482VgtTgtC11B.1.177.510.004566
ORF1ab/nsp3482V482VgtTgtC11B.1.1880.016667
ORF1ab/nsp3482V482delGTT---11B.1.20.000009
ORF1ab/nsp3482V482AgTtgCt11B.1.2430.00007
ORF1ab/nsp3482V482VgtTgtA11B.1.2580.000067
ORF1ab/nsp3482V482delGTT---11B.1.360.000146
ORF1ab/nsp3482V482VgtTgtC11B.1.36.290.000517
ORF1ab/nsp3482V482VgtTgtC11B.1.3620.001541
ORF1ab/nsp3482V482VgtTgtA11B.1.4620.007246
ORF1ab/nsp3482V482AgTtgCt11B.1.4710.002732
ORF1ab/nsp3482V482FGttTtt11B.1.5640.000426
ORF1ab/nsp3482V482VgtTgtC11B.1.5880.00091
ORF1ab/nsp3482V482NGTTAAC11B.1.617.20.000004
ORF1ab/nsp3482V482VgtTgtC11B.1.930.000934
ORF1ab/nsp3482V482delGTT---11B.570.015152
ORF1ab/nsp3482V482VgtTgtC11D.20.000075
ORF1ab/nsp3482V482delGTT---11P.10.000016
ORF1ab/nsp3482V482VgtTgtC11P.10.000016
ORF1ab/nsp3482V482VgtTgtC11P.1.150.000232
ORF1ab/nsp3482V482AgTtgCt11Q.80.000165
ORF1ab/nsp3482V482delGTT---11R.10.00009
ORF1ab/nsp3482V482delGTT---11U.30.003861