CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 480

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3480A480VA1298VnonsyngCtgTt14039140380.9999294157-4159
ORF1ab/nsp3480A480VA1298VnonsyngCTgTC1403910.00007123014157-4159
ORF1ab/nsp3480A480AA1298AsyngcTgcC1901440.7578954157-4159
ORF1ab/nsp3480A480AA1298AsyngcTgcA190240.1263164157-4159
ORF1ab/nsp3480A480AA1298AsyngcTgcG190220.1157894157-4159
ORF1ab/nsp3480A480SA1298SnonsynGctTct343414157-4159
ORF1ab/nsp3480A480delA1298deldelGCT---222214157-4159
ORF1ab/nsp3480A480TA1298TnonsynGctAct21190.9047624157-4159
ORF1ab/nsp3480A480TA1298TnonsynGcTAcA2110.0476194157-4159
ORF1ab/nsp3480A480TA1298TnonsynGcTAcC2110.0476194157-4159
ORF1ab/nsp3480A480del1A1298del1delgcTgc-15120.84157-4159
ORF1ab/nsp3480A480del1A1298del1delGct-ct1520.1333334157-4159
ORF1ab/nsp3480A480del1A1298del1delgCtg-t1510.06666674157-4159
ORF1ab/nsp3480A480PA1298PnonsynGctCct8814157-4159
ORF1ab/nsp3480A480DA1298DnonsyngCtgAt870.8754157-4159
ORF1ab/nsp3480A480DA1298DnonsyngCTgAC810.1254157-4159
ORF1ab/nsp3480A480GA1298GnonsyngCtgGt3314157-4159
ORF1ab/nsp3480A480IA1298InonsynGCtATt210.54157-4159
ORF1ab/nsp3480A480IA1298InonsynGCTATC210.54157-4159
ORF1ab/nsp3480A480NA1298NnonsynGCtAAt210.54157-4159
ORF1ab/nsp3480A480NA1298NnonsynGCTAAC210.54157-4159
ORF1ab/nsp3480A480HA1298HnonsynGCTCAC1114157-4159
ORF1ab/nsp3480A480LA1298LnonsynGCTCTG1114157-4159

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3480A480VgCtgTt1403814039All0.002685
ORF1ab/nsp3480A480VgCTgTC114039All0
ORF1ab/nsp3480A480VgCtgTt61116111AY.40.009511
ORF1ab/nsp3480A480VgCtgTt11511151B.1.1.70.00103
ORF1ab/nsp3480A480VgCtgTt829829B.1.1.2790.929372
ORF1ab/nsp3480A480VgCtgTt641641B.1.1.1570.585388
ORF1ab/nsp3480A480VgCtgTt394394B.1.5950.102818
ORF1ab/nsp3480A480VgCtgTt379379AY.250.00228
ORF1ab/nsp3480A480VgCtgTt366366B.1.2340.048291
ORF1ab/nsp3480A480VgCtgTt283283B.1.20.002492
ORF1ab/nsp3480A480VgCtgTt252252B.1.617.20.000949
ORF1ab/nsp3480A480VgCtgTt208208AY.440.001266
ORF1ab/nsp3480A480VgCtgTt205205AY.430.000908
ORF1ab/nsp3480A480VgCtgTt204204AY.1030.001267
ORF1ab/nsp3480A480AgcTgcC144190All0.000028
ORF1ab/nsp3480A480AgcTgcA24190All0.000005
ORF1ab/nsp3480A480AgcTgcG22190All0.000004
ORF1ab/nsp3480A480VgCtgTt172172B.1.1770.002265
ORF1ab/nsp3480A480VgCtgTt152152B.1.4290.003576
ORF1ab/nsp3480A480VgCtgTt133133B.1.4270.006716
ORF1ab/nsp3480A480VgCtgTt131131B.1.10.002376
ORF1ab/nsp3480A480VgCtgTt116116B.10.001063
ORF1ab/nsp3480A480VgCtgTt9292AY.4.10.067847
ORF1ab/nsp3480A480VgCtgTt9090B.1.177.50.111801
ORF1ab/nsp3480A480VgCtgTt8888P.10.001386
ORF1ab/nsp3480A480VgCtgTt8484B.1.1600.00262
ORF1ab/nsp3480A480VgCtgTt8080AY.70.01568
ORF1ab/nsp3480A480VgCtgTt8080B.1.2390.09768
ORF1ab/nsp3480A480VgCtgTt8080P.1.170.012941
ORF1ab/nsp3480A480VgCtgTt7171B.1.6210.006285
ORF1ab/nsp3480A480VgCtgTt6464AY.30.000637
ORF1ab/nsp3480A480VgCtgTt6363AY.600.059099
ORF1ab/nsp3480A480VgCtgTt6262B.1.1.4860.097792
ORF1ab/nsp3480A480VgCtgTt5959B.1.177.540.035779
ORF1ab/nsp3480A480VgCtgTt5656AY.290.000883
ORF1ab/nsp3480A480VgCtgTt4949AY.730.032601
ORF1ab/nsp3480A480VgCtgTt4545B.1.177.580.05992
ORF1ab/nsp3480A480SGctTct3434All0.000007
ORF1ab/nsp3480A480VgCtgTt3434B.1.1.3480.02707
ORF1ab/nsp3480A480VgCtgTt3232AY.3.10.002728
ORF1ab/nsp3480A480VgCtgTt3232AY.390.000791
ORF1ab/nsp3480A480AgcTgcC2931B.1.1.70.000026
ORF1ab/nsp3480A480AgcTgcG131B.1.1.70.000001
ORF1ab/nsp3480A480AgcTgcA131B.1.1.70.000001
ORF1ab/nsp3480A480VgCtgTt3131P.1.140.001482
ORF1ab/nsp3480A480VgCtgTt2929B.1.5260.000682
ORF1ab/nsp3480A480VgCtgTt2828AY.260.000793
ORF1ab/nsp3480A480VgCtgTt2828P.20.005226
ORF1ab/nsp3480A480VgCtgTt2626B.1.1.5190.001032
ORF1ab/nsp3480A480VgCtgTt2525B.1.6370.001827
ORF1ab/nsp3480A480VgCtgTt2323AY.39.10.000911
ORF1ab/nsp3480A480delGCT---2222All0.000004
ORF1ab/nsp3480A480VgCtgTt2222AY.1020.000583
ORF1ab/nsp3480A480AgcTgcC1722AY.40.000026
ORF1ab/nsp3480A480AgcTgcG322AY.40.000005
ORF1ab/nsp3480A480AgcTgcA222AY.40.000003
ORF1ab/nsp3480A480VgCtgTt2222B.1.3510.000654
ORF1ab/nsp3480A480TGctAct1921All0.000004
ORF1ab/nsp3480A480TGcTAcA121All0
ORF1ab/nsp3480A480TGcTAcC121All0
ORF1ab/nsp3480A480VgCtgTt2121AY.120.20.026992
ORF1ab/nsp3480A480AgcTgcC1919AY.1020.000504
ORF1ab/nsp3480A480VgCtgTt1818AY.1190.000636
ORF1ab/nsp3480A480VgCtgTt1818AY.4.20.00039
ORF1ab/nsp3480A480VgCtgTt1818B.1.2330.253521
ORF1ab/nsp3480A480VgCtgTt1818B.1.2430.001253
ORF1ab/nsp3480A480VgCtgTt1818Q.10.002274
ORF1ab/nsp3480A480VgCtgTt1818Q.30.002611
ORF1ab/nsp3480A480VgCtgTt1717AY.420.000684
ORF1ab/nsp3480A480VgCtgTt1717B.1.177.600.003713
ORF1ab/nsp3480A480AgcTgcA716B.1.617.20.000026
ORF1ab/nsp3480A480AgcTgcC616B.1.617.20.000023
ORF1ab/nsp3480A480AgcTgcG316B.1.617.20.000011
ORF1ab/nsp3480A480del1gcTgc-1215All0.000002
ORF1ab/nsp3480A480del1Gct-ct215All0
ORF1ab/nsp3480A480del1gCtg-t115All0
ORF1ab/nsp3480A480VgCtgTt1515AY.200.000583
ORF1ab/nsp3480A480VgCtgTt1515B.1.2580.000998
ORF1ab/nsp3480A480VgCtgTt1515B.1.466.20.005869
ORF1ab/nsp3480A480VgCtgTt1515B.1.5960.001307
ORF1ab/nsp3480A480VgCtgTt1414AY.60.000576
ORF1ab/nsp3480A480VgCtgTt1313AY.1170.001099
ORF1ab/nsp3480A480VgCtgTt1313B.1.177.860.002385
ORF1ab/nsp3480A480VgCtgTt1313B.1.3690.003708
ORF1ab/nsp3480A480VgCtgTt1111AY.1210.001488
ORF1ab/nsp3480A480VgCtgTt1111AY.470.000342
ORF1ab/nsp3480A480VgCtgTt1111B.1.1.2200.020446
ORF1ab/nsp3480A480VgCtgTt1111B.1.1.3180.003319
ORF1ab/nsp3480A480VgCtgTt1111B.1.36.290.005691
ORF1ab/nsp3480A480VgCtgTt1111P.1.120.005324
ORF1ab/nsp3480A480VgCtgTt1010A.2.5.10.048077
ORF1ab/nsp3480A480VgCtgTt1010B.1.2210.00071
ORF1ab/nsp3480A480AgcTgcC1010B.1.4290.000235
ORF1ab/nsp3480A480VgCtgTt1010B.1.5770.006873
ORF1ab/nsp3480A480VgCtgTt1010B.1.6090.004794
ORF1ab/nsp3480A480VgCtgTt99AY.330.000601
ORF1ab/nsp3480A480AgcTgcG59AY.440.00003
ORF1ab/nsp3480A480AgcTgcC49AY.440.000024
ORF1ab/nsp3480A480VgCtgTt99AY.750.000504
ORF1ab/nsp3480A480VgCtgTt99AY.9.20.000331
ORF1ab/nsp3480A480PGctCct88All0.000002
ORF1ab/nsp3480A480DgCtgAt78All0.000001
ORF1ab/nsp3480A480DgCTgAC18All0
ORF1ab/nsp3480A480VgCtgTt88AY.1200.000297
ORF1ab/nsp3480A480VgCtgTt88AY.98.10.000387
ORF1ab/nsp3480A480VgCtgTt88B0.001022
ORF1ab/nsp3480A480VgCtgTt88B.1.1.2090.071429
ORF1ab/nsp3480A480VgCtgTt88B.1.4990.008403
ORF1ab/nsp3480A480VgCtgTt88B.1.617.10.001032
ORF1ab/nsp3480A480VgCtgTt88N.60.056738
ORF1ab/nsp3480A480VgCtgTt77AD.20.001533
ORF1ab/nsp3480A480AgcTgcC77AH.11
ORF1ab/nsp3480A480VgCtgTt77AY.340.000679
ORF1ab/nsp3480A480VgCtgTt77AY.46.40.001152
ORF1ab/nsp3480A480VgCtgTt77AY.50.000145
ORF1ab/nsp3480A480VgCtgTt77AY.980.000553
ORF1ab/nsp3480A480VgCtgTt77B.1.177.180.008121
ORF1ab/nsp3480A480VgCtgTt77C.370.000812
ORF1ab/nsp3480A480VgCtgTt66AY.1000.000276
ORF1ab/nsp3480A480VgCtgTt66AY.1180.000376
ORF1ab/nsp3480A480VgCtgTt66AY.270.000388
ORF1ab/nsp3480A480VgCtgTt66B.1.1.2840.000644
ORF1ab/nsp3480A480VgCtgTt66B.1.1.630.002315
ORF1ab/nsp3480A480VgCtgTt66B.1.2410.00487
ORF1ab/nsp3480A480VgCtgTt66B.1.3620.009245
ORF1ab/nsp3480A480VgCtgTt66B.1.5170.002562
ORF1ab/nsp3480A480VgCtgTt66P.1.150.001394
ORF1ab/nsp3480A480SGctTct55A.2.40.016835
ORF1ab/nsp3480A480VgCtgTt55AY.140.00044
ORF1ab/nsp3480A480SGctTct55AY.40.000008
ORF1ab/nsp3480A480TGctAct55AY.40.000008
ORF1ab/nsp3480A480VgCtgTt55AY.5.30.001687
ORF1ab/nsp3480A480VgCtgTt55AY.99.20.000461
ORF1ab/nsp3480A480VgCtgTt55B.1.1.2140.000277
ORF1ab/nsp3480A480VgCtgTt55B.1.1.700.001705
ORF1ab/nsp3480A480VgCtgTt55B.1.3360.012195
ORF1ab/nsp3480A480VgCtgTt55B.1.360.00073
ORF1ab/nsp3480A480VgCtgTt55B.1.3980.014881
ORF1ab/nsp3480A480VgCtgTt55B.1.4160.006345
ORF1ab/nsp3480A480VgCtgTt55C.360.004554
ORF1ab/nsp3480A480SGctTct55D.20.000375
ORF1ab/nsp3480A480VgCtgTt55Q.80.000825
ORF1ab/nsp3480A480VgCtgTt55R.10.00045
ORF1ab/nsp3480A480VgCtgTt44AY.130.000644
ORF1ab/nsp3480A480AgcTgcA34AY.430.000013
ORF1ab/nsp3480A480AgcTgcC14AY.430.000004
ORF1ab/nsp3480A480VgCtgTt44AY.46.50.000794
ORF1ab/nsp3480A480VgCtgTt44AY.7.10.000451
ORF1ab/nsp3480A480VgCtgTt44B.1.1.2220.000816
ORF1ab/nsp3480A480VgCtgTt44B.1.1.3290.015385
ORF1ab/nsp3480A480VgCtgTt44B.1.1.330.001684
ORF1ab/nsp3480A480VgCtgTt44B.1.1.3820.142857
ORF1ab/nsp3480A480VgCtgTt44B.1.1.390.002039
ORF1ab/nsp3480A480SGctTct44B.1.1.70.000004
ORF1ab/nsp3480A480AgcTgcC44B.1.36.80.004
ORF1ab/nsp3480A480VgCtgTt44B.1.4090.003125
ORF1ab/nsp3480A480VgCtgTt44B.1.5230.009804
ORF1ab/nsp3480A480AgcTgcA44B.1.5260.000094
ORF1ab/nsp3480A480VgCtgTt44B.1.5750.001214
ORF1ab/nsp3480A480AgcTgcC44C.260.029412
ORF1ab/nsp3480A480GgCtgGt33All0.000001
ORF1ab/nsp3480A480AgcTgcC23AY.1030.000012
ORF1ab/nsp3480A480AgcTgcA13AY.1030.000006
ORF1ab/nsp3480A480VgCtgTt33AY.230.000209
ORF1ab/nsp3480A480VgCtgTt33AY.240.001293
ORF1ab/nsp3480A480VgCtgTt33AY.350.000699
ORF1ab/nsp3480A480VgCtgTt33AY.360.000445
ORF1ab/nsp3480A480VgCtgTt33AY.450.000365
ORF1ab/nsp3480A480VgCtgTt33AY.460.000312
ORF1ab/nsp3480A480VgCtgTt33AY.590.001589
ORF1ab/nsp3480A480VgCtgTt33AY.610.000314
ORF1ab/nsp3480A480VgCtgTt33AY.680.000821
ORF1ab/nsp3480A480VgCtgTt33AY.690.00056
ORF1ab/nsp3480A480VgCtgTt33AY.75.10.000541
ORF1ab/nsp3480A480VgCtgTt33AY.90.000203
ORF1ab/nsp3480A480del1gcTgc-33B.10.000027
ORF1ab/nsp3480A480delGCT---33B.10.000027
ORF1ab/nsp3480A480VgCtgTt33B.1.1.3010.003538
ORF1ab/nsp3480A480VgCtgTt33B.1.1.3170.001235
ORF1ab/nsp3480A480VgCtgTt33B.1.1.370.000579
ORF1ab/nsp3480A480AgcTgcG33B.1.1.500.002037
ORF1ab/nsp3480A480VgCtgTt33B.1.1.5060.111111
ORF1ab/nsp3480A480AgcTgcC33B.1.1.630.001157
ORF1ab/nsp3480A480delGCT---33B.1.1.70.000003
ORF1ab/nsp3480A480VgCtgTt33B.1.110.30.002155
ORF1ab/nsp3480A480VgCtgTt33B.1.177.70.000495
ORF1ab/nsp3480A480AgcTgcC33B.1.20.000026
ORF1ab/nsp3480A480del1gcTgc-23B.1.20.000018
ORF1ab/nsp3480A480del1Gct-ct13B.1.20.000009
ORF1ab/nsp3480A480VgCtgTt33B.60.00273
ORF1ab/nsp3480A480VgCtgTt33P.1.40.00293
ORF1ab/nsp3480A480DgCTgAC120.055556
ORF1ab/nsp3480A480NGCTAAC120.055556
ORF1ab/nsp3480A480TGctAct120.055556
ORF1ab/nsp3480A480DgCtgAt120.055556
ORF1ab/nsp3480A480TGcTAcC120.055556
ORF1ab/nsp3480A480IGCTATC120.055556
ORF1ab/nsp3480A480VgCTgTC120.055556
ORF1ab/nsp3480A480NGCtAAt120.055556
ORF1ab/nsp3480A480VgCtgTt120.055556
ORF1ab/nsp3480A480IGCtATt120.055556
ORF1ab/nsp3480A480SGctTct22A.20.001324
ORF1ab/nsp3480A480NGCTAAC12All0
ORF1ab/nsp3480A480IGCtATt12All0
ORF1ab/nsp3480A480IGCTATC12All0
ORF1ab/nsp3480A480NGCtAAt12All0
ORF1ab/nsp3480A480TGctAct22AY.1030.000012
ORF1ab/nsp3480A480VgCtgTt22AY.1050.001286
ORF1ab/nsp3480A480VgCtgTt22AY.1070.000932
ORF1ab/nsp3480A480VgCtgTt22AY.1140.000462
ORF1ab/nsp3480A480AgcTgcG12AY.1180.000063
ORF1ab/nsp3480A480AgcTgcC12AY.1180.000063
ORF1ab/nsp3480A480VgCtgTt22AY.280.003781
ORF1ab/nsp3480A480PGctCct22AY.430.000009
ORF1ab/nsp3480A480delGCT---22AY.430.000009
ORF1ab/nsp3480A480TGctAct22AY.440.000012
ORF1ab/nsp3480A480AgcTgcC22AY.470.000062
ORF1ab/nsp3480A480VgCtgTt22AY.5.40.000553
ORF1ab/nsp3480A480VgCtgTt22AY.500.001599
ORF1ab/nsp3480A480VgCtgTt22AY.540.000191
ORF1ab/nsp3480A480VgCtgTt22AY.560.00321
ORF1ab/nsp3480A480AgcTgcA22AY.580.001815
ORF1ab/nsp3480A480VgCtgTt22AY.700.000417
ORF1ab/nsp3480A480VgCtgTt22AY.710.00095
ORF1ab/nsp3480A480VgCtgTt22AY.790.002421
ORF1ab/nsp3480A480VgCtgTt22AY.840.000875
ORF1ab/nsp3480A480VgCtgTt22AY.860.00166
ORF1ab/nsp3480A480VgCtgTt22AY.940.000885
ORF1ab/nsp3480A480VgCtgTt22AZ.50.007018
ORF1ab/nsp3480A480DgCtgAt22B.10.000018
ORF1ab/nsp3480A480GgCtgGt22B.10.000018
ORF1ab/nsp3480A480SGctTct22B.10.000018
ORF1ab/nsp3480A480AgcTgcA12B.10.000009
ORF1ab/nsp3480A480AgcTgcG12B.10.000009
ORF1ab/nsp3480A480AgcTgcC12B.1.10.000018
ORF1ab/nsp3480A480AgcTgcA12B.1.10.000018
ORF1ab/nsp3480A480VgCtgTt22B.1.1.1140.133333
ORF1ab/nsp3480A480AgcTgcC22B.1.1.2510.015873
ORF1ab/nsp3480A480VgCtgTt22B.1.1.2800.006173
ORF1ab/nsp3480A480VgCtgTt22B.1.1.4090.005666
ORF1ab/nsp3480A480VgCtgTt22B.1.1.4340.000697
ORF1ab/nsp3480A480AgcTgcA22B.1.1.4470.071429
ORF1ab/nsp3480A480AgcTgcC22B.1.1.5190.000079
ORF1ab/nsp3480A480TGctAct22B.1.1.5190.000079
ORF1ab/nsp3480A480VgCtgTt22B.1.1.5230.003125
ORF1ab/nsp3480A480VgCtgTt22B.1.1470.001512
ORF1ab/nsp3480A480AgcTgcG22B.1.1770.000026
ORF1ab/nsp3480A480VgCtgTt22B.1.177.150.001262
ORF1ab/nsp3480A480VgCtgTt22B.1.177.210.000153
ORF1ab/nsp3480A480VgCtgTt22B.1.177.440.001038
ORF1ab/nsp3480A480delGCT---22B.1.20.000018
ORF1ab/nsp3480A480VgCtgTt22B.1.214.30.014286
ORF1ab/nsp3480A480VgCtgTt22B.1.2400.000431
ORF1ab/nsp3480A480VgCtgTt22B.1.258.110.000793
ORF1ab/nsp3480A480VgCtgTt22B.1.258.170.000208
ORF1ab/nsp3480A480AgcTgcC22B.1.258.170.000208
ORF1ab/nsp3480A480VgCtgTt22B.1.36.180.00084
ORF1ab/nsp3480A480VgCtgTt22B.1.36.270.001527
ORF1ab/nsp3480A480VgCtgTt22B.1.36.310.003503
ORF1ab/nsp3480A480VgCtgTt22B.1.36.90.006431
ORF1ab/nsp3480A480VgCtgTt22B.1.5250.000226
ORF1ab/nsp3480A480VgCtgTt22B.1.5650.001621
ORF1ab/nsp3480A480AgcTgcC22P.10.000032
ORF1ab/nsp3480A480VgCtgTt22P.1.100.000539
ORF1ab/nsp3480A480VgCtgTt22P.1.20.002312
ORF1ab/nsp3480A480VgCtgTt22P.1.70.000639
ORF1ab/nsp3480A480AgcTgcC22Q.30.00029
ORF1ab/nsp3480A480AgcTgcC110.055556
ORF1ab/nsp3480A480del1gcTgc-11A0.000387
ORF1ab/nsp3480A480VgCtgTt11A.10.000282
ORF1ab/nsp3480A480SGctTct11A.2.20.001689
ORF1ab/nsp3480A480VgCtgTt11A.2.40.003367
ORF1ab/nsp3480A480VgCtgTt11A.2.50.000499
ORF1ab/nsp3480A480AgcTgcC11A.23.10.000704
ORF1ab/nsp3480A480VgCtgTt11A.23.10.000704
ORF1ab/nsp3480A480VgCtgTt11AB.10.008197
ORF1ab/nsp3480A480LGCTCTG11All0
ORF1ab/nsp3480A480HGCTCAC11All0
ORF1ab/nsp3480A480VgCtgTt11AY.100.00053
ORF1ab/nsp3480A480SGctTct11AY.1020.000027
ORF1ab/nsp3480A480DgCtgAt11AY.1030.000006
ORF1ab/nsp3480A480VgCtgTt11AY.1100.000113
ORF1ab/nsp3480A480TGctAct11AY.1100.000113
ORF1ab/nsp3480A480VgCtgTt11AY.1130.000142
ORF1ab/nsp3480A480VgCtgTt11AY.1160.000287
ORF1ab/nsp3480A480VgCtgTt11AY.120.10.000321
ORF1ab/nsp3480A480AgcTgcC11AY.1210.000135
ORF1ab/nsp3480A480VgCtgTt11AY.160.00038
ORF1ab/nsp3480A480del1gCtg-t11AY.160.00038
ORF1ab/nsp3480A480VgCtgTt11AY.16.10.00047
ORF1ab/nsp3480A480AgcTgcC11AY.260.000028
ORF1ab/nsp3480A480PGctCct11AY.30.00001
ORF1ab/nsp3480A480VgCtgTt11AY.300.000396
ORF1ab/nsp3480A480AgcTgcC11AY.300.000396
ORF1ab/nsp3480A480VgCtgTt11AY.320.000532
ORF1ab/nsp3480A480VgCtgTt11AY.380.000499
ORF1ab/nsp3480A480AgcTgcC11AY.390.000025
ORF1ab/nsp3480A480SGctTct11AY.39.10.00004
ORF1ab/nsp3480A480del1gcTgc-11AY.39.1.10.000725
ORF1ab/nsp3480A480GgCtgGt11AY.40.000002
ORF1ab/nsp3480A480VgCtgTt11AY.4.2.10.000149
ORF1ab/nsp3480A480VgCtgTt11AY.4.50.000107
ORF1ab/nsp3480A480delGCT---11AY.4.50.000107
ORF1ab/nsp3480A480HGCTCAC11AY.440.000006
ORF1ab/nsp3480A480del1gcTgc-11AY.440.000006
ORF1ab/nsp3480A480LGCTCTG11AY.440.000006
ORF1ab/nsp3480A480SGctTct11AY.440.000006
ORF1ab/nsp3480A480VgCtgTt11AY.46.60.000072
ORF1ab/nsp3480A480del1Gct-ct11AY.46.60.000072
ORF1ab/nsp3480A480SGctTct11AY.46.60.000072
ORF1ab/nsp3480A480PGctCct11AY.470.000031
ORF1ab/nsp3480A480VgCtgTt11AY.480.000465
ORF1ab/nsp3480A480AgcTgcC11AY.50.000021
ORF1ab/nsp3480A480TGctAct11AY.50.000021
ORF1ab/nsp3480A480AgcTgcC11AY.5.40.000277
ORF1ab/nsp3480A480AgcTgcC11AY.540.000095
ORF1ab/nsp3480A480AgcTgcC11AY.60.000041
ORF1ab/nsp3480A480del1gcTgc-11AY.610.000105
ORF1ab/nsp3480A480AgcTgcC11AY.610.000105
ORF1ab/nsp3480A480VgCtgTt11AY.670.000464
ORF1ab/nsp3480A480PGctCct11AY.670.000464
ORF1ab/nsp3480A480TGctAct11AY.7.10.000113
ORF1ab/nsp3480A480VgCtgTt11AY.7.20.000559
ORF1ab/nsp3480A480VgCtgTt11AY.770.001127
ORF1ab/nsp3480A480VgCtgTt11AY.800.001129
ORF1ab/nsp3480A480VgCtgTt11AY.810.001992
ORF1ab/nsp3480A480VgCtgTt11AY.9.10.000084
ORF1ab/nsp3480A480AgcTgcC11AY.9.20.000037
ORF1ab/nsp3480A480VgCtgTt11AY.930.000273
ORF1ab/nsp3480A480PGctCct11AY.990.001049
ORF1ab/nsp3480A480SGctTct11AY.99.20.000092
ORF1ab/nsp3480A480TGcTAcA11B.10.000009
ORF1ab/nsp3480A480delGCT---11B.1.10.000018
ORF1ab/nsp3480A480VgCtgTt11B.1.1.100.001115
ORF1ab/nsp3480A480AgcTgcC11B.1.1.1180.010204
ORF1ab/nsp3480A480VgCtgTt11B.1.1.120.007463
ORF1ab/nsp3480A480VgCtgTt11B.1.1.1610.003534
ORF1ab/nsp3480A480VgCtgTt11B.1.1.2050.003717
ORF1ab/nsp3480A480VgCtgTt11B.1.1.2160.00089
ORF1ab/nsp3480A480VgCtgTt11B.1.1.2280.003049
ORF1ab/nsp3480A480SGctTct11B.1.1.2550.00303
ORF1ab/nsp3480A480VgCtgTt11B.1.1.2770.000759
ORF1ab/nsp3480A480VgCtgTt11B.1.1.2940.001266
ORF1ab/nsp3480A480VgCtgTt11B.1.1.2970.002237
ORF1ab/nsp3480A480VgCtgTt11B.1.1.3060.000438
ORF1ab/nsp3480A480VgCtgTt11B.1.1.3120.001912
ORF1ab/nsp3480A480VgCtgTt11B.1.1.3630.005988
ORF1ab/nsp3480A480VgCtgTt11B.1.1.3720.000689
ORF1ab/nsp3480A480SGctTct11B.1.1.3770.001381
ORF1ab/nsp3480A480delGCT---11B.1.1.390.00051
ORF1ab/nsp3480A480VgCtgTt11B.1.1.4170.002703
ORF1ab/nsp3480A480VgCtgTt11B.1.1.4320.001266
ORF1ab/nsp3480A480VgCtgTt11B.1.1.4460.076923
ORF1ab/nsp3480A480delGCT---11B.1.1.500.000679
ORF1ab/nsp3480A480delGCT---11B.1.1.5190.00004
ORF1ab/nsp3480A480VgCtgTt11B.1.1.5260.003546
ORF1ab/nsp3480A480TGctAct11B.1.1.70.000001
ORF1ab/nsp3480A480AgcTgcC11B.1.1.700.000341
ORF1ab/nsp3480A480VgCtgTt11B.1.1150.021739
ORF1ab/nsp3480A480VgCtgTt11B.1.1270.002198
ORF1ab/nsp3480A480VgCtgTt11B.1.1280.000635
ORF1ab/nsp3480A480VgCtgTt11B.1.1490.003425
ORF1ab/nsp3480A480VgCtgTt11B.1.160.290.004219
ORF1ab/nsp3480A480VgCtgTt11B.1.160.80.001289
ORF1ab/nsp3480A480SGctTct11B.1.1770.000013
ORF1ab/nsp3480A480DgCtgAt11B.1.1770.000013
ORF1ab/nsp3480A480VgCtgTt11B.1.177.120.000152
ORF1ab/nsp3480A480VgCtgTt11B.1.177.160.000664
ORF1ab/nsp3480A480VgCtgTt11B.1.177.170.000821
ORF1ab/nsp3480A480VgCtgTt11B.1.177.730.000566
ORF1ab/nsp3480A480VgCtgTt11B.1.177.750.001041
ORF1ab/nsp3480A480VgCtgTt11B.1.177.770.000726
ORF1ab/nsp3480A480VgCtgTt11B.1.177.810.000189
ORF1ab/nsp3480A480AgcTgcG11B.1.177.820.000477
ORF1ab/nsp3480A480VgCtgTt11B.1.177.830.001481
ORF1ab/nsp3480A480VgCtgTt11B.1.177.870.000728
ORF1ab/nsp3480A480VgCtgTt11B.1.1990.004132
ORF1ab/nsp3480A480DgCtgAt11B.1.20.000009
ORF1ab/nsp3480A480TGctAct11B.1.20.000009
ORF1ab/nsp3480A480VgCtgTt11B.1.2060.000816
ORF1ab/nsp3480A480VgCtgTt11B.1.2100.002132
ORF1ab/nsp3480A480AgcTgcC11B.1.214.10.02
ORF1ab/nsp3480A480AgcTgcC11B.1.214.20.0006
ORF1ab/nsp3480A480VgCtgTt11B.1.2370.004975
ORF1ab/nsp3480A480VgCtgTt11B.1.258.140.00098
ORF1ab/nsp3480A480AgcTgcG11B.1.258.140.00098
ORF1ab/nsp3480A480VgCtgTt11B.1.2980.002114
ORF1ab/nsp3480A480TGctAct11B.1.3110.000275
ORF1ab/nsp3480A480VgCtgTt11B.1.3110.000275
ORF1ab/nsp3480A480VgCtgTt11B.1.3240.001605
ORF1ab/nsp3480A480VgCtgTt11B.1.3380.008621
ORF1ab/nsp3480A480delGCT---11B.1.360.000146
ORF1ab/nsp3480A480VgCtgTt11B.1.36.190.009259
ORF1ab/nsp3480A480VgCtgTt11B.1.36.220.001208
ORF1ab/nsp3480A480VgCtgTt11B.1.36.250.002208
ORF1ab/nsp3480A480VgCtgTt11B.1.36.360.000602
ORF1ab/nsp3480A480VgCtgTt11B.1.36.80.001
ORF1ab/nsp3480A480VgCtgTt11B.1.3660.004878
ORF1ab/nsp3480A480del1gcTgc-11B.1.3800.006623
ORF1ab/nsp3480A480VgCtgTt11B.1.4170.028571
ORF1ab/nsp3480A480VgCtgTt11B.1.4230.010204
ORF1ab/nsp3480A480AgcTgcC11B.1.4270.00005
ORF1ab/nsp3480A480SGctTct11B.1.438.10.000107
ORF1ab/nsp3480A480VgCtgTt11B.1.438.10.000107
ORF1ab/nsp3480A480VgCtgTt11B.1.4530.003236
ORF1ab/nsp3480A480VgCtgTt11B.1.4590.004082
ORF1ab/nsp3480A480VgCtgTt11B.1.466.10.007194
ORF1ab/nsp3480A480VgCtgTt11B.1.4690.00361
ORF1ab/nsp3480A480VgCtgTt11B.1.4700.001404
ORF1ab/nsp3480A480VgCtgTt11B.1.4800.002488
ORF1ab/nsp3480A480VgCtgTt11B.1.4970.000315
ORF1ab/nsp3480A480del1gcTgc-11B.1.5260.000024
ORF1ab/nsp3480A480VgCtgTt11B.1.5270.003704
ORF1ab/nsp3480A480VgCtgTt11B.1.5490.007194
ORF1ab/nsp3480A480AgcTgcC11B.1.5510.00129
ORF1ab/nsp3480A480VgCtgTt11B.1.5510.00129
ORF1ab/nsp3480A480VgCtgTt11B.1.5600.00463
ORF1ab/nsp3480A480VgCtgTt11B.1.5690.014493
ORF1ab/nsp3480A480AgcTgcC11B.1.5750.000303
ORF1ab/nsp3480A480VgCtgTt11B.1.5800.004065
ORF1ab/nsp3480A480AgcTgcG11B.1.5950.000261
ORF1ab/nsp3480A480PGctCct11B.1.5950.000261
ORF1ab/nsp3480A480DgCtgAt11B.1.5960.000087
ORF1ab/nsp3480A480delGCT---11B.1.617.20.000004
ORF1ab/nsp3480A480PGctCct11B.1.617.20.000004
ORF1ab/nsp3480A480TGctAct11B.1.617.20.000004
ORF1ab/nsp3480A480VgCtgTt11B.1.621.10.000506
ORF1ab/nsp3480A480VgCtgTt11B.1.6320.006711
ORF1ab/nsp3480A480VgCtgTt11B.1.80.001972
ORF1ab/nsp3480A480VgCtgTt11B.1.930.000934
ORF1ab/nsp3480A480VgCtgTt11B.290.003509
ORF1ab/nsp3480A480VgCtgTt11B.30.000831
ORF1ab/nsp3480A480VgCtgTt11B.40.002208
ORF1ab/nsp3480A480VgCtgTt11B.400.000364
ORF1ab/nsp3480A480VgCtgTt11B.550.00295
ORF1ab/nsp3480A480delGCT---11B.570.015152
ORF1ab/nsp3480A480VgCtgTt11B.6.60.000889
ORF1ab/nsp3480A480VgCtgTt11C.170.055556
ORF1ab/nsp3480A480VgCtgTt11C.350.000774
ORF1ab/nsp3480A480delGCT---11C.360.000911
ORF1ab/nsp3480A480VgCtgTt11C.36.3.10.002717
ORF1ab/nsp3480A480del1gcTgc-11D.20.000075
ORF1ab/nsp3480A480VgCtgTt11D.20.000075
ORF1ab/nsp3480A480VgCtgTt11K.20.04
ORF1ab/nsp3480A480VgCtgTt11L.30.003546
ORF1ab/nsp3480A480VgCtgTt11N.10.016949
ORF1ab/nsp3480A480VgCtgTt11N.50.001767
ORF1ab/nsp3480A480VgCtgTt11N.90.005952
ORF1ab/nsp3480A480delGCT---11P.10.000016
ORF1ab/nsp3480A480SGctTct11P.10.000016
ORF1ab/nsp3480A480VgCtgTt11P.1.17.10.000875
ORF1ab/nsp3480A480AgcTgcC11P.20.000187
ORF1ab/nsp3480A480AgcTgcC11Q.10.000126
ORF1ab/nsp3480A480delGCT---11R.10.00009
ORF1ab/nsp3480A480delGCT---11U.30.003861