CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 473

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3473V473FV1291FnonsynGttTtt139711397114136-4138
ORF1ab/nsp3473V473IV1291InonsynGttAtt158515840.9993694136-4138
ORF1ab/nsp3473V473IV1291InonsynGtTAtC158510.0006309154136-4138
ORF1ab/nsp3473V473VV1291VsyngtTgtC7105980.8422544136-4138
ORF1ab/nsp3473V473VV1291VsyngtTgtG710920.1295774136-4138
ORF1ab/nsp3473V473VV1291VsyngtTgtA710200.0281694136-4138
ORF1ab/nsp3473V473AV1291AnonsyngTtgCt1441430.9930564136-4138
ORF1ab/nsp3473V473AV1291AnonsyngTTgCG14410.006944444136-4138
ORF1ab/nsp3473V473delV1291deldelGTT---434314136-4138
ORF1ab/nsp3473V473LV1291LnonsynGttCtt8814136-4138
ORF1ab/nsp3473V473DV1291DnonsyngTtgAt650.8333334136-4138
ORF1ab/nsp3473V473DV1291DnonsyngTTgAC610.1666674136-4138
ORF1ab/nsp3473V473del1V1291del1delgTtg-t530.64136-4138
ORF1ab/nsp3473V473del1V1291del1delGtt-tt520.44136-4138
ORF1ab/nsp3473V473GV1291GnonsyngTTgGG320.6666674136-4138
ORF1ab/nsp3473V473GV1291GnonsyngTtgGt310.3333334136-4138
ORF1ab/nsp3473V473NV1291NnonsynGTTAAC210.54136-4138
ORF1ab/nsp3473V473NV1291NnonsynGTtAAt210.54136-4138
ORF1ab/nsp3473V473EV1291EnonsyngTTgAA1114136-4138
ORF1ab/nsp3473V473del2V1291del2delgTTg--1114136-4138
ORF1ab/nsp3473V473HV1291HnonsynGTTCAC1114136-4138
ORF1ab/nsp3473V473SV1291SnonsynGTtTCt1114136-4138
ORF1ab/nsp3473V473TV1291TnonsynGTtACt1114136-4138

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3473V473FGttTtt1397113971All0.002672
ORF1ab/nsp3473V473FGttTtt1074110741B.1.1.70.009616
ORF1ab/nsp3473V473FGttTtt16551655B.1.36.360.996388
ORF1ab/nsp3473V473IGttAtt15841585All0.000303
ORF1ab/nsp3473V473IGtTAtC11585All0
ORF1ab/nsp3473V473VgtTgtC598710All0.000114
ORF1ab/nsp3473V473VgtTgtG92710All0.000018
ORF1ab/nsp3473V473VgtTgtA20710All0.000004
ORF1ab/nsp3473V473IGttAtt554554B.1.617.20.002086
ORF1ab/nsp3473V473IGttAtt324324B.1.3980.964286
ORF1ab/nsp3473V473FGttTtt305305B.1.1770.004016
ORF1ab/nsp3473V473VgtTgtC263279B.1.1.70.000235
ORF1ab/nsp3473V473VgtTgtG12279B.1.1.70.000011
ORF1ab/nsp3473V473VgtTgtA4279B.1.1.70.000004
ORF1ab/nsp3473V473FGttTtt277277AY.40.000431
ORF1ab/nsp3473V473IGttAtt241241B.1.1.70.000216
ORF1ab/nsp3473V473IGttAtt166166AY.430.000735
ORF1ab/nsp3473V473AgTtgCt143144All0.000027
ORF1ab/nsp3473V473AgTTgCG1144All0
ORF1ab/nsp3473V473VgtTgtC129129AY.40.000201
ORF1ab/nsp3473V473FGttTtt111111Q.80.018305
ORF1ab/nsp3473V473FGttTtt105105AY.440.000639
ORF1ab/nsp3473V473FGttTtt7979B.10.000724
ORF1ab/nsp3473V473FGttTtt7676AY.430.000337
ORF1ab/nsp3473V473IGttAtt6464B.1.20.000564
ORF1ab/nsp3473V473FGttTtt6161AY.250.000367
ORF1ab/nsp3473V473FGttTtt5555AY.200.002138
ORF1ab/nsp3473V473VgtTgtG4849AY.440.000292
ORF1ab/nsp3473V473VgtTgtC149AY.440.000006
ORF1ab/nsp3473V473FGttTtt4848B.1.617.20.000181
ORF1ab/nsp3473V473delGTT---4343All0.000008
ORF1ab/nsp3473V473FGttTtt4040Q.10.005053
ORF1ab/nsp3473V473AgTtgCt3939AY.40.000061
ORF1ab/nsp3473V473FGttTtt2929B.1.10.000526
ORF1ab/nsp3473V473AgTtgCt2828AY.1210.003789
ORF1ab/nsp3473V473VgtTgtC2828AY.470.000871
ORF1ab/nsp3473V473AgTtgCt2828B.1.617.20.000105
ORF1ab/nsp3473V473FGttTtt2727AY.470.00084
ORF1ab/nsp3473V473FGttTtt2727B.1.20.000238
ORF1ab/nsp3473V473FGttTtt2424B.1.4290.000565
ORF1ab/nsp3473V473IGttAtt2323AY.50.000475
ORF1ab/nsp3473V473FGttTtt2121AY.1030.00013
ORF1ab/nsp3473V473VgtTgtC1220AY.1030.000075
ORF1ab/nsp3473V473VgtTgtG720AY.1030.000043
ORF1ab/nsp3473V473VgtTgtA120AY.1030.000006
ORF1ab/nsp3473V473IGttAtt2020AY.40.000031
ORF1ab/nsp3473V473IGttAtt1919AY.1020.000504
ORF1ab/nsp3473V473VgtTgtC1818B.1.2580.001198
ORF1ab/nsp3473V473FGttTtt1717B.1.3510.000505
ORF1ab/nsp3473V473IGttAtt1616B.1.177.170.013136
ORF1ab/nsp3473V473VgtTgtC1315B.1.617.20.000049
ORF1ab/nsp3473V473VgtTgtG215B.1.617.20.000008
ORF1ab/nsp3473V473IGttAtt1414AY.440.000085
ORF1ab/nsp3473V473VgtTgtC914B.1.20.000079
ORF1ab/nsp3473V473VgtTgtG314B.1.20.000026
ORF1ab/nsp3473V473VgtTgtA214B.1.20.000018
ORF1ab/nsp3473V473VgtTgtC1013AY.250.00006
ORF1ab/nsp3473V473VgtTgtA213AY.250.000012
ORF1ab/nsp3473V473VgtTgtG113AY.250.000006
ORF1ab/nsp3473V473FGttTtt1212AY.390.000297
ORF1ab/nsp3473V473FGttTtt1212B.1.1.4160.01086
ORF1ab/nsp3473V473AgTtgCt1212B.1.1.70.000011
ORF1ab/nsp3473V473AgTtgCt1111AY.1030.000068
ORF1ab/nsp3473V473FGttTtt1111B.1.1.1520.44
ORF1ab/nsp3473V473FGttTtt1111P.10.000173
ORF1ab/nsp3473V473IGttAtt1010AY.460.001041
ORF1ab/nsp3473V473IGttAtt1010B.1.10.000181
ORF1ab/nsp3473V473IGttAtt99AY.1030.000056
ORF1ab/nsp3473V473IGttAtt99AY.30.00009
ORF1ab/nsp3473V473VgtTgtC79AY.430.000031
ORF1ab/nsp3473V473VgtTgtG29AY.430.000009
ORF1ab/nsp3473V473FGttTtt99AY.50.000186
ORF1ab/nsp3473V473VgtTgtC89B.1.1600.00025
ORF1ab/nsp3473V473VgtTgtG19B.1.1600.000031
ORF1ab/nsp3473V473LGttCtt88All0.000002
ORF1ab/nsp3473V473IGttAtt88AY.390.000198
ORF1ab/nsp3473V473VgtTgtC88AY.70.001568
ORF1ab/nsp3473V473IGttAtt88B.10.000073
ORF1ab/nsp3473V473VgtTgtC88B.1.1.10.002614
ORF1ab/nsp3473V473delGTT---88B.1.1.70.000007
ORF1ab/nsp3473V473VgtTgtA58B.1.1770.000066
ORF1ab/nsp3473V473VgtTgtC28B.1.1770.000026
ORF1ab/nsp3473V473VgtTgtG18B.1.1770.000013
ORF1ab/nsp3473V473VgtTgtC88B.1.5750.002427
ORF1ab/nsp3473V473VgtTgtC77AY.1020.000186
ORF1ab/nsp3473V473FGttTtt77AY.230.000488
ORF1ab/nsp3473V473FGttTtt77AY.4.20.000152
ORF1ab/nsp3473V473FGttTtt77B.1.360.001021
ORF1ab/nsp3473V473VgtTgtC77P.10.00011
ORF1ab/nsp3473V473DgTtgAt56All0.000001
ORF1ab/nsp3473V473DgTTgAC16All0
ORF1ab/nsp3473V473IGttAtt66AY.99.20.000553
ORF1ab/nsp3473V473IGttAtt66B.1.177.820.002864
ORF1ab/nsp3473V473AgTtgCt66B.1.20.000053
ORF1ab/nsp3473V473FGttTtt66B.1.2390.007326
ORF1ab/nsp3473V473del1gTtg-t35All0.000001
ORF1ab/nsp3473V473del1Gtt-tt25All0
ORF1ab/nsp3473V473IGttAtt55AY.230.000349
ORF1ab/nsp3473V473delGTT---55AY.250.00003
ORF1ab/nsp3473V473FGttTtt55AY.260.000142
ORF1ab/nsp3473V473IGttAtt55AY.330.000334
ORF1ab/nsp3473V473FGttTtt55B.1.416.10.007812
ORF1ab/nsp3473V473FGttTtt55B.1.5260.000118
ORF1ab/nsp3473V473FGttTtt55B.1.5960.000436
ORF1ab/nsp3473V473FGttTtt55P.1.140.000239
ORF1ab/nsp3473V473FGttTtt44AU.10.005063
ORF1ab/nsp3473V473FGttTtt44AY.140.000352
ORF1ab/nsp3473V473FGttTtt44AY.330.000267
ORF1ab/nsp3473V473VgtTgtC44AY.9.10.000335
ORF1ab/nsp3473V473FGttTtt44AY.9.20.000147
ORF1ab/nsp3473V473FGttTtt44AY.98.10.000194
ORF1ab/nsp3473V473VgtTgtG24B.10.000018
ORF1ab/nsp3473V473VgtTgtC14B.10.000009
ORF1ab/nsp3473V473VgtTgtA14B.10.000009
ORF1ab/nsp3473V473FGttTtt44B.1.1.5190.000159
ORF1ab/nsp3473V473VgtTgtG44B.1.2430.000278
ORF1ab/nsp3473V473VgtTgtA44B.1.3690.001141
ORF1ab/nsp3473V473FGttTtt44B.1.4270.000202
ORF1ab/nsp3473V473FGttTtt44B.1.5610.001588
ORF1ab/nsp3473V473IGttAtt44P.1.170.000647
ORF1ab/nsp3473V473VgtTgtC44Q.10.000505
ORF1ab/nsp3473V473GgTTgGG23All0
ORF1ab/nsp3473V473GgTtgGt13All0
ORF1ab/nsp3473V473FGttTtt33AY.1000.000138
ORF1ab/nsp3473V473FGttTtt33AY.1020.00008
ORF1ab/nsp3473V473FGttTtt33AY.1190.000106
ORF1ab/nsp3473V473VgtTgtC33AY.130.000483
ORF1ab/nsp3473V473FGttTtt33AY.270.000194
ORF1ab/nsp3473V473FGttTtt33AY.290.000047
ORF1ab/nsp3473V473delGTT---33AY.430.000013
ORF1ab/nsp3473V473IGttAtt33AY.46.40.000494
ORF1ab/nsp3473V473FGttTtt33AY.46.60.000217
ORF1ab/nsp3473V473IGttAtt33AY.470.000093
ORF1ab/nsp3473V473FGttTtt33AY.60.000123
ORF1ab/nsp3473V473IGttAtt33AY.610.000314
ORF1ab/nsp3473V473VgtTgtC33AY.99.20.000276
ORF1ab/nsp3473V473VgtTgtC33B.1.1.390.001529
ORF1ab/nsp3473V473FGttTtt33B.1.1600.000094
ORF1ab/nsp3473V473VgtTgtC33B.1.3110.000824
ORF1ab/nsp3473V473IGttAtt33B.1.36.290.001552
ORF1ab/nsp3473V473VgtTgtC33B.1.4270.000151
ORF1ab/nsp3473V473VgtTgtC33B.1.4780.035294
ORF1ab/nsp3473V473IGttAtt33B.1.6210.000266
ORF1ab/nsp3473V473FGttTtt33D.20.000225
ORF1ab/nsp3473V473IGttAtt33P.10.000047
ORF1ab/nsp3473V473FGttTtt33Q.30.000435
ORF1ab/nsp3473V473IGttAtt33R.10.00027
ORF1ab/nsp3473V473NGTTAAC120.055556
ORF1ab/nsp3473V473NGTtAAt120.055556
ORF1ab/nsp3473V473IGtTAtC120.055556
ORF1ab/nsp3473V473DgTtgAt120.055556
ORF1ab/nsp3473V473DgTTgAC120.055556
ORF1ab/nsp3473V473IGttAtt120.055556
ORF1ab/nsp3473V473NGTTAAC12All0
ORF1ab/nsp3473V473NGTtAAt12All0
ORF1ab/nsp3473V473IGttAtt22AY.1000.000092
ORF1ab/nsp3473V473VgtTgtG12AY.1000.000046
ORF1ab/nsp3473V473VgtTgtC12AY.1000.000046
ORF1ab/nsp3473V473AgTtgCt22AY.1200.000074
ORF1ab/nsp3473V473FGttTtt22AY.160.000759
ORF1ab/nsp3473V473VgtTgtC22AY.230.000139
ORF1ab/nsp3473V473VgtTgtC22AY.290.000032
ORF1ab/nsp3473V473FGttTtt22AY.30.00002
ORF1ab/nsp3473V473VgtTgtC22AY.390.000049
ORF1ab/nsp3473V473FGttTtt22AY.39.10.000079
ORF1ab/nsp3473V473delGTT---22AY.40.000003
ORF1ab/nsp3473V473GgTTgGG22AY.40.000003
ORF1ab/nsp3473V473FGttTtt22AY.450.000243
ORF1ab/nsp3473V473FGttTtt22AY.460.000208
ORF1ab/nsp3473V473FGttTtt22AY.46.40.000329
ORF1ab/nsp3473V473FGttTtt22AY.550.001835
ORF1ab/nsp3473V473IGttAtt22AY.750.000112
ORF1ab/nsp3473V473IGttAtt22AY.9.20.000073
ORF1ab/nsp3473V473FGttTtt22AY.900.001369
ORF1ab/nsp3473V473FGttTtt22AY.940.000885
ORF1ab/nsp3473V473IGttAtt22AY.980.000158
ORF1ab/nsp3473V473VgtTgtC22AY.980.000158
ORF1ab/nsp3473V473FGttTtt22AY.980.000158
ORF1ab/nsp3473V473AgTtgCt22AY.980.000158
ORF1ab/nsp3473V473delGTT---22B.10.000018
ORF1ab/nsp3473V473VgtTgtC22B.1.1.250.001137
ORF1ab/nsp3473V473FGttTtt22B.1.1.40.005952
ORF1ab/nsp3473V473IGttAtt22B.1.1640.029851
ORF1ab/nsp3473V473AgTtgCt22B.1.1770.000026
ORF1ab/nsp3473V473FGttTtt22B.1.177.210.000153
ORF1ab/nsp3473V473FGttTtt22B.1.177.330.003289
ORF1ab/nsp3473V473FGttTtt22B.1.177.40.000422
ORF1ab/nsp3473V473VgtTgtC22B.1.177.580.002663
ORF1ab/nsp3473V473FGttTtt22B.1.177.810.000379
ORF1ab/nsp3473V473LGttCtt22B.1.20.000018
ORF1ab/nsp3473V473FGttTtt22B.1.2430.000139
ORF1ab/nsp3473V473FGttTtt22B.1.351.20.000605
ORF1ab/nsp3473V473FGttTtt22B.1.4530.006472
ORF1ab/nsp3473V473FGttTtt22B.1.466.20.000782
ORF1ab/nsp3473V473VgtTgtC22B.1.5680.002222
ORF1ab/nsp3473V473FGttTtt22B.1.6190.001742
ORF1ab/nsp3473V473delGTT---22P.10.000032
ORF1ab/nsp3473V473VgtTgtC110.055556
ORF1ab/nsp3473V473FGttTtt11A.10.000282
ORF1ab/nsp3473V473FGttTtt11A.190.009434
ORF1ab/nsp3473V473FGttTtt11A.2.20.001689
ORF1ab/nsp3473V473FGttTtt11A.2.50.000499
ORF1ab/nsp3473V473VgtTgtC11AA.70.009174
ORF1ab/nsp3473V473FGttTtt11AD.20.000219
ORF1ab/nsp3473V473EgTTgAA11All0
ORF1ab/nsp3473V473SGTtTCt11All0
ORF1ab/nsp3473V473HGTTCAC11All0
ORF1ab/nsp3473V473TGTtACt11All0
ORF1ab/nsp3473V473del2gTTg--11All0
ORF1ab/nsp3473V473AgTtgCt11AY.1000.000046
ORF1ab/nsp3473V473LGttCtt11AY.1030.000006
ORF1ab/nsp3473V473LGttCtt11AY.1060.000335
ORF1ab/nsp3473V473AgTtgCt11AY.1100.000113
ORF1ab/nsp3473V473FGttTtt11AY.1130.000142
ORF1ab/nsp3473V473IGttAtt11AY.1170.000085
ORF1ab/nsp3473V473AgTtgCt11AY.1170.000085
ORF1ab/nsp3473V473VgtTgtG11AY.1180.000063
ORF1ab/nsp3473V473VgtTgtG11AY.1190.000035
ORF1ab/nsp3473V473DgTtgAt11AY.1190.000035
ORF1ab/nsp3473V473IGttAtt11AY.120.20.001285
ORF1ab/nsp3473V473IGttAtt11AY.140.000088
ORF1ab/nsp3473V473IGttAtt11AY.250.000006
ORF1ab/nsp3473V473AgTtgCt11AY.250.000006
ORF1ab/nsp3473V473IGttAtt11AY.260.000028
ORF1ab/nsp3473V473LGttCtt11AY.260.000028
ORF1ab/nsp3473V473FGttTtt11AY.320.000532
ORF1ab/nsp3473V473FGttTtt11AY.340.000097
ORF1ab/nsp3473V473VgtTgtC11AY.34.10.00051
ORF1ab/nsp3473V473FGttTtt11AY.34.10.00051
ORF1ab/nsp3473V473VgtTgtA11AY.360.000148
ORF1ab/nsp3473V473AgTtgCt11AY.390.000025
ORF1ab/nsp3473V473del2gTTg--11AY.4.10.000737
ORF1ab/nsp3473V473VgtTgtG11AY.4.20.000022
ORF1ab/nsp3473V473IGttAtt11AY.4.40.000409
ORF1ab/nsp3473V473delGTT---11AY.4.50.000107
ORF1ab/nsp3473V473FGttTtt11AY.4.50.000107
ORF1ab/nsp3473V473AgTtgCt11AY.410.000294
ORF1ab/nsp3473V473FGttTtt11AY.420.00004
ORF1ab/nsp3473V473IGttAtt11AY.420.00004
ORF1ab/nsp3473V473LGttCtt11AY.430.000004
ORF1ab/nsp3473V473AgTtgCt11AY.430.000004
ORF1ab/nsp3473V473delGTT---11AY.440.000006
ORF1ab/nsp3473V473VgtTgtC11AY.460.000104
ORF1ab/nsp3473V473FGttTtt11AY.46.10.001027
ORF1ab/nsp3473V473delGTT---11AY.46.60.000072
ORF1ab/nsp3473V473FGttTtt11AY.480.000465
ORF1ab/nsp3473V473VgtTgtC11AY.480.000465
ORF1ab/nsp3473V473VgtTgtC11AY.50.000021
ORF1ab/nsp3473V473AgTtgCt11AY.50.000021
ORF1ab/nsp3473V473IGttAtt11AY.5.30.000337
ORF1ab/nsp3473V473IGttAtt11AY.5.40.000277
ORF1ab/nsp3473V473FGttTtt11AY.530.000288
ORF1ab/nsp3473V473VgtTgtC11AY.550.000917
ORF1ab/nsp3473V473FGttTtt11AY.610.000105
ORF1ab/nsp3473V473VgtTgtC11AY.610.000105
ORF1ab/nsp3473V473IGttAtt11AY.660.00107
ORF1ab/nsp3473V473FGttTtt11AY.660.00107
ORF1ab/nsp3473V473delGTT---11AY.670.000464
ORF1ab/nsp3473V473FGttTtt11AY.70.000196
ORF1ab/nsp3473V473FGttTtt11AY.7.10.000113
ORF1ab/nsp3473V473VgtTgtG11AY.760.004831
ORF1ab/nsp3473V473IGttAtt11AY.780.001541
ORF1ab/nsp3473V473IGttAtt11AY.830.001724
ORF1ab/nsp3473V473FGttTtt11AY.840.000437
ORF1ab/nsp3473V473FGttTtt11AY.850.000427
ORF1ab/nsp3473V473FGttTtt11AY.860.00083
ORF1ab/nsp3473V473IGttAtt11AY.9.10.000084
ORF1ab/nsp3473V473IGttAtt11AY.98.10.000048
ORF1ab/nsp3473V473VgtTgtC11AY.98.10.000048
ORF1ab/nsp3473V473IGttAtt11AY.990.001049
ORF1ab/nsp3473V473AgTtgCt11AY.99.20.000092
ORF1ab/nsp3473V473IGttAtt11AZ.10.000867
ORF1ab/nsp3473V473AgTTgCG11B.10.000009
ORF1ab/nsp3473V473LGttCtt11B.10.000009
ORF1ab/nsp3473V473delGTT---11B.1.10.000018
ORF1ab/nsp3473V473delGTT---11B.1.1.10.000327
ORF1ab/nsp3473V473delGTT---11B.1.1.1370.0125
ORF1ab/nsp3473V473FGttTtt11B.1.1.1640.005155
ORF1ab/nsp3473V473SGTtTCt11B.1.1.2160.00089
ORF1ab/nsp3473V473FGttTtt11B.1.1.2200.001859
ORF1ab/nsp3473V473VgtTgtC11B.1.1.2220.000204
ORF1ab/nsp3473V473FGttTtt11B.1.1.2300.009174
ORF1ab/nsp3473V473FGttTtt11B.1.1.2770.000759
ORF1ab/nsp3473V473VgtTgtC11B.1.1.2790.001121
ORF1ab/nsp3473V473FGttTtt11B.1.1.280.000311
ORF1ab/nsp3473V473FGttTtt11B.1.1.3260.001761
ORF1ab/nsp3473V473FGttTtt11B.1.1.3330.001076
ORF1ab/nsp3473V473FGttTtt11B.1.1.370.000193
ORF1ab/nsp3473V473AgTtgCt11B.1.1.370.000193
ORF1ab/nsp3473V473VgtTgtG11B.1.1.3720.000689
ORF1ab/nsp3473V473VgtTgtC11B.1.1.3910.008547
ORF1ab/nsp3473V473delGTT---11B.1.1.5190.00004
ORF1ab/nsp3473V473FGttTtt11B.1.1.5250.005464
ORF1ab/nsp3473V473EgTTgAA11B.1.1.70.000001
ORF1ab/nsp3473V473del1gTtg-t11B.1.1.70.000001
ORF1ab/nsp3473V473FGttTtt11B.1.1.700.000341
ORF1ab/nsp3473V473AgTtgCt11B.1.1590.012195
ORF1ab/nsp3473V473VgtTgtC11B.1.1690.014925
ORF1ab/nsp3473V473FGttTtt11B.1.1700.00431
ORF1ab/nsp3473V473IGttAtt11B.1.1770.000013
ORF1ab/nsp3473V473FGttTtt11B.1.177.160.000664
ORF1ab/nsp3473V473FGttTtt11B.1.177.170.000821
ORF1ab/nsp3473V473delGTT---11B.1.177.40.000211
ORF1ab/nsp3473V473IGttAtt11B.1.177.560.000668
ORF1ab/nsp3473V473IGttAtt11B.1.177.570.000281
ORF1ab/nsp3473V473FGttTtt11B.1.177.570.000281
ORF1ab/nsp3473V473FGttTtt11B.1.177.730.000566
ORF1ab/nsp3473V473FGttTtt11B.1.177.80.000752
ORF1ab/nsp3473V473FGttTtt11B.1.177.800.001912
ORF1ab/nsp3473V473FGttTtt11B.1.177.840.006667
ORF1ab/nsp3473V473delGTT---11B.1.20.000009
ORF1ab/nsp3473V473DgTtgAt11B.1.20.000009
ORF1ab/nsp3473V473del1Gtt-tt11B.1.20.000009
ORF1ab/nsp3473V473FGttTtt11B.1.214.30.007143
ORF1ab/nsp3473V473delGTT---11B.1.2210.000071
ORF1ab/nsp3473V473FGttTtt11B.1.2370.004975
ORF1ab/nsp3473V473FGttTtt11B.1.2400.000216
ORF1ab/nsp3473V473IGttAtt11B.1.2410.000812
ORF1ab/nsp3473V473FGttTtt11B.1.2600.003344
ORF1ab/nsp3473V473VgtTgtG11B.1.3320.003497
ORF1ab/nsp3473V473IGttAtt11B.1.3510.00003
ORF1ab/nsp3473V473delGTT---11B.1.360.000146
ORF1ab/nsp3473V473FGttTtt11B.1.36.10.00114
ORF1ab/nsp3473V473IGttAtt11B.1.36.100.004785
ORF1ab/nsp3473V473FGttTtt11B.1.36.220.001208
ORF1ab/nsp3473V473delGTT---11B.1.36.290.000517
ORF1ab/nsp3473V473FGttTtt11B.1.3620.001541
ORF1ab/nsp3473V473FGttTtt11B.1.3950.007042
ORF1ab/nsp3473V473IGttAtt11B.1.4090.000781
ORF1ab/nsp3473V473FGttTtt11B.1.5240.001406
ORF1ab/nsp3473V473HGTTCAC11B.1.5250.000113
ORF1ab/nsp3473V473FGttTtt11B.1.5250.000113
ORF1ab/nsp3473V473delGTT---11B.1.5250.000113
ORF1ab/nsp3473V473LGttCtt11B.1.5260.000024
ORF1ab/nsp3473V473VgtTgtC11B.1.5260.000024
ORF1ab/nsp3473V473FGttTtt11B.1.5600.00463
ORF1ab/nsp3473V473VgtTgtG11B.1.5650.00081
ORF1ab/nsp3473V473VgtTgtG11B.1.5740.002151
ORF1ab/nsp3473V473del1gTtg-t11B.1.5760.000907
ORF1ab/nsp3473V473VgtTgtC11B.1.5760.000907
ORF1ab/nsp3473V473IGttAtt11B.1.5770.000687
ORF1ab/nsp3473V473FGttTtt11B.1.5800.004065
ORF1ab/nsp3473V473FGttTtt11B.1.5810.009434
ORF1ab/nsp3473V473AgTtgCt11B.1.5850.027778
ORF1ab/nsp3473V473FGttTtt11B.1.6120.002653
ORF1ab/nsp3473V473FGttTtt11B.1.617.10.000129
ORF1ab/nsp3473V473del1gTtg-t11B.1.617.20.000004
ORF1ab/nsp3473V473delGTT---11B.1.617.20.000004
ORF1ab/nsp3473V473DgTtgAt11B.1.617.20.000004
ORF1ab/nsp3473V473FGttTtt11B.1.6210.000089
ORF1ab/nsp3473V473FGttTtt11B.1.6340.003425
ORF1ab/nsp3473V473AgTtgCt11B.1.6370.000073
ORF1ab/nsp3473V473FGttTtt11B.1.6370.000073
ORF1ab/nsp3473V473IGttAtt11B.110.005128
ORF1ab/nsp3473V473FGttTtt11B.230.002924
ORF1ab/nsp3473V473IGttAtt11B.30.000831
ORF1ab/nsp3473V473GgTtgGt11B.4.40.018868
ORF1ab/nsp3473V473delGTT---11B.570.015152
ORF1ab/nsp3473V473IGttAtt11C.170.055556
ORF1ab/nsp3473V473IGttAtt11C.360.000911
ORF1ab/nsp3473V473VgtTgtC11C.360.000911
ORF1ab/nsp3473V473DgTtgAt11C.360.000911
ORF1ab/nsp3473V473delGTT---11C.36.30.000567
ORF1ab/nsp3473V473VgtTgtC11C.370.000116
ORF1ab/nsp3473V473IGttAtt11D.20.000075
ORF1ab/nsp3473V473FGttTtt11N.40.004255
ORF1ab/nsp3473V473TGTtACt11P.10.000016
ORF1ab/nsp3473V473delGTT---11P.1.10.000318
ORF1ab/nsp3473V473del1Gtt-tt11P.1.10.000318
ORF1ab/nsp3473V473FGttTtt11P.1.10.000318
ORF1ab/nsp3473V473VgtTgtC11P.1.100.000269
ORF1ab/nsp3473V473FGttTtt11P.1.150.000232
ORF1ab/nsp3473V473FGttTtt11P.30.001595
ORF1ab/nsp3473V473delGTT---11Q.20.000613
ORF1ab/nsp3473V473FGttTtt11Q.40.000455
ORF1ab/nsp3473V473IGttAtt11Q.80.000165
ORF1ab/nsp3473V473FGttTtt11R.10.00009
ORF1ab/nsp3473V473delGTT---11R.10.00009
ORF1ab/nsp3473V473delGTT---11U.30.003861
ORF1ab/nsp3473V473IGttAtt11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.