CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 466

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3466P466SP1284SnonsynCcaTca134513390.9955394115-4117
ORF1ab/nsp3466P466SP1284SnonsynCcATcG134560.004460974115-4117
ORF1ab/nsp3466P466PP1284PsynccAccG132412730.961484115-4117
ORF1ab/nsp3466P466PP1284PsynccAccT1324280.0211484115-4117
ORF1ab/nsp3466P466PP1284PsynccAccC1324230.01737164115-4117
ORF1ab/nsp3466P466LP1284LnonsyncCacTa2412400.9958514115-4117
ORF1ab/nsp3466P466LP1284LnonsyncCAcTT24110.004149384115-4117
ORF1ab/nsp3466P466TP1284TnonsynCcaAca404014115-4117
ORF1ab/nsp3466P466delP1284deldelCCA---282814115-4117
ORF1ab/nsp3466P466QP1284QnonsyncCacAa25240.964115-4117
ORF1ab/nsp3466P466QP1284QnonsyncCAcAG2510.044115-4117
ORF1ab/nsp3466P466del1P1284del1delccAcc-12110.9166674115-4117
ORF1ab/nsp3466P466del1P1284del1delCca-ca1210.08333334115-4117
ORF1ab/nsp3466P466RP1284RnonsyncCacGa111114115-4117
ORF1ab/nsp3466P466AP1284AnonsynCcaGca650.8333334115-4117
ORF1ab/nsp3466P466AP1284AnonsynCcAGcT610.1666674115-4117
ORF1ab/nsp3466P466VP1284VnonsynCCAGTT210.54115-4117
ORF1ab/nsp3466P466VP1284VnonsynCCaGTa210.54115-4117
ORF1ab/nsp3466P466KP1284KnonsynCCaAAa1114115-4117
ORF1ab/nsp3466P466del2P1284del2delcCAc--1114115-4117

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3466P466SCcaTca13391345All0.000256
ORF1ab/nsp3466P466SCcATcG61345All0.000001
ORF1ab/nsp3466P466PccAccG12731324All0.000243
ORF1ab/nsp3466P466PccAccT281324All0.000005
ORF1ab/nsp3466P466PccAccC231324All0.000004
ORF1ab/nsp3466P466PccAccG871871AY.4.30.733165
ORF1ab/nsp3466P466SCcaTca577577B.1.1.70.000517
ORF1ab/nsp3466P466LcCacTa240241All0.000046
ORF1ab/nsp3466P466LcCAcTT1241All0
ORF1ab/nsp3466P466PccAccG190195AY.40.000296
ORF1ab/nsp3466P466PccAccT3195AY.40.000005
ORF1ab/nsp3466P466PccAccC2195AY.40.000003
ORF1ab/nsp3466P466SCcaTca101101B.1.617.20.00038
ORF1ab/nsp3466P466SCcaTca6060B.1.1.2140.003327
ORF1ab/nsp3466P466LcCacTa6060B.1.1.70.000054
ORF1ab/nsp3466P466SCcaTca5555AY.40.000086
ORF1ab/nsp3466P466PccAccG4552B.1.1.70.00004
ORF1ab/nsp3466P466PccAccC652B.1.1.70.000005
ORF1ab/nsp3466P466PccAccT152B.1.1.70.000001
ORF1ab/nsp3466P466SCcaTca4747AY.1030.000292
ORF1ab/nsp3466P466SCcaTca4141AY.250.000247
ORF1ab/nsp3466P466TCcaAca4040All0.000008
ORF1ab/nsp3466P466SCcaTca3737AY.1020.000981
ORF1ab/nsp3466P466LcCacTa3434AY.40.000053
ORF1ab/nsp3466P466SCcaTca3333AY.430.000146
ORF1ab/nsp3466P466SCcaTca2929B.1.2430.002018
ORF1ab/nsp3466P466delCCA---2828All0.000005
ORF1ab/nsp3466P466SCcaTca2727AY.1130.003845
ORF1ab/nsp3466P466PccAccG2626AY.1030.000161
ORF1ab/nsp3466P466QcCacAa2425All0.000005
ORF1ab/nsp3466P466QcCAcAG125All0
ORF1ab/nsp3466P466SCcaTca2323P.10.000362
ORF1ab/nsp3466P466LcCacTa2121AY.250.000126
ORF1ab/nsp3466P466PccAccG2021AY.440.000122
ORF1ab/nsp3466P466PccAccT121AY.440.000006
ORF1ab/nsp3466P466SCcaTca2020AY.30.000199
ORF1ab/nsp3466P466LcCacTa2020AY.430.000089
ORF1ab/nsp3466P466TCcaAca2020AY.440.000122
ORF1ab/nsp3466P466SCcaTca2020AY.50.000413
ORF1ab/nsp3466P466SCcaTca1616B.1.20.000141
ORF1ab/nsp3466P466QcCacAa1616B.1.5250.001811
ORF1ab/nsp3466P466PccAccG1014AY.50.000206
ORF1ab/nsp3466P466PccAccC414AY.50.000083
ORF1ab/nsp3466P466PccAccG1414B.1.617.20.000053
ORF1ab/nsp3466P466SCcaTca1313B.1.1.1810.059091
ORF1ab/nsp3466P466del1ccAcc-1112All0.000002
ORF1ab/nsp3466P466del1Cca-ca112All0
ORF1ab/nsp3466P466SCcaTca1212B.1.5260.000282
ORF1ab/nsp3466P466RcCacGa1111All0.000002
ORF1ab/nsp3466P466PccAccG911AY.390.000222
ORF1ab/nsp3466P466PccAccT211AY.390.000049
ORF1ab/nsp3466P466SCcaTca1111AY.440.000067
ORF1ab/nsp3466P466PccAccC610AY.430.000027
ORF1ab/nsp3466P466PccAccG410AY.430.000018
ORF1ab/nsp3466P466SCcaTca1010B.1.1770.000132
ORF1ab/nsp3466P466SCcaTca99AY.1070.004194
ORF1ab/nsp3466P466SCcaTca99AY.9.10.000754
ORF1ab/nsp3466P466SCcaTca99AY.980.000711
ORF1ab/nsp3466P466LcCacTa88AY.420.000322
ORF1ab/nsp3466P466SCcaTca88B.10.000073
ORF1ab/nsp3466P466PccAccG78B.10.000064
ORF1ab/nsp3466P466PccAccT18B.10.000009
ORF1ab/nsp3466P466LcCacTa88B.1.20.00007
ORF1ab/nsp3466P466PccAccG77AY.3.10.000597
ORF1ab/nsp3466P466SCcaTca77B.1.4290.000165
ORF1ab/nsp3466P466SCcaTca77Q.10.000884
ORF1ab/nsp3466P466ACcaGca56All0.000001
ORF1ab/nsp3466P466ACcAGcT16All0
ORF1ab/nsp3466P466LcCacTa66AY.30.00006
ORF1ab/nsp3466P466SCcaTca66AY.390.000148
ORF1ab/nsp3466P466PccAccT66AY.39.10.000238
ORF1ab/nsp3466P466SCcATcG66AY.4.30.005051
ORF1ab/nsp3466P466LcCacTa66AY.440.000037
ORF1ab/nsp3466P466SCcaTca66AY.9.20.00022
ORF1ab/nsp3466P466TCcaAca66B.10.000055
ORF1ab/nsp3466P466LcCacTa66B.10.000055
ORF1ab/nsp3466P466delCCA---66B.1.1.70.000005
ORF1ab/nsp3466P466SCcaTca66B.1.3510.000178
ORF1ab/nsp3466P466LcCacTa66B.1.4290.000141
ORF1ab/nsp3466P466LcCacTa55AY.1030.000031
ORF1ab/nsp3466P466SCcaTca55AY.290.000079
ORF1ab/nsp3466P466SCcaTca55AY.4.20.000108
ORF1ab/nsp3466P466SCcaTca55B.1.1.2940.006329
ORF1ab/nsp3466P466LcCacTa55B.1.1770.000066
ORF1ab/nsp3466P466SCcaTca55B.1.4050.061728
ORF1ab/nsp3466P466PccAccG45P.10.000063
ORF1ab/nsp3466P466PccAccC15P.10.000016
ORF1ab/nsp3466P466SCcaTca44AY.1000.000184
ORF1ab/nsp3466P466SCcaTca44AY.1170.000338
ORF1ab/nsp3466P466PccAccG44AY.1190.000141
ORF1ab/nsp3466P466SCcaTca44AY.3.10.000341
ORF1ab/nsp3466P466PccAccG44AY.360.000593
ORF1ab/nsp3466P466SCcaTca44AY.610.000419
ORF1ab/nsp3466P466RcCacGa44B.1.1.70.000004
ORF1ab/nsp3466P466PccAccG24B.1.20.000018
ORF1ab/nsp3466P466PccAccT24B.1.20.000018
ORF1ab/nsp3466P466SCcaTca44B.1.4270.000202
ORF1ab/nsp3466P466RcCacGa44B.1.5250.000453
ORF1ab/nsp3466P466LcCacTa44B.1.5960.000349
ORF1ab/nsp3466P466SCcaTca44B.1.5960.000349
ORF1ab/nsp3466P466LcCacTa44B.1.617.20.000015
ORF1ab/nsp3466P466SCcaTca44D.20.0003
ORF1ab/nsp3466P466SCcaTca44R.10.00036
ORF1ab/nsp3466P466SCcaTca33AY.1180.000188
ORF1ab/nsp3466P466PccAccG33AY.250.000018
ORF1ab/nsp3466P466PccAccG33AY.30.00003
ORF1ab/nsp3466P466TCcaAca33AY.430.000013
ORF1ab/nsp3466P466SCcaTca33AY.470.000093
ORF1ab/nsp3466P466delCCA---33B.10.000027
ORF1ab/nsp3466P466LcCacTa33B.1.1.2220.000612
ORF1ab/nsp3466P466PccAccG23B.1.1.500.001358
ORF1ab/nsp3466P466PccAccT13B.1.1.500.000679
ORF1ab/nsp3466P466SCcaTca33B.1.1.5190.000119
ORF1ab/nsp3466P466SCcaTca33B.1.5240.004219
ORF1ab/nsp3466P466SCcaTca33B.1.6370.000219
ORF1ab/nsp3466P466VCCAGTT120.055556
ORF1ab/nsp3466P466LcCacTa120.055556
ORF1ab/nsp3466P466ACcaGca120.055556
ORF1ab/nsp3466P466LcCAcTT120.055556
ORF1ab/nsp3466P466ACcAGcT120.055556
ORF1ab/nsp3466P466VCCaGTa120.055556
ORF1ab/nsp3466P466SCcaTca22A.10.000564
ORF1ab/nsp3466P466VCCAGTT12All0
ORF1ab/nsp3466P466VCCaGTa12All0
ORF1ab/nsp3466P466PccAccG22AY.1020.000053
ORF1ab/nsp3466P466SCcaTca22AY.1190.000071
ORF1ab/nsp3466P466SCcaTca22AY.130.000322
ORF1ab/nsp3466P466PccAccG22AY.200.000078
ORF1ab/nsp3466P466PccAccG22AY.240.000862
ORF1ab/nsp3466P466delCCA---22AY.250.000012
ORF1ab/nsp3466P466PccAccG22AY.260.000057
ORF1ab/nsp3466P466PccAccG22AY.340.000194
ORF1ab/nsp3466P466RcCacGa22AY.420.00008
ORF1ab/nsp3466P466QcCacAa22AY.430.000009
ORF1ab/nsp3466P466SCcaTca22AY.46.20.001271
ORF1ab/nsp3466P466PccAccT22AY.46.60.000144
ORF1ab/nsp3466P466PccAccT22AY.470.000062
ORF1ab/nsp3466P466del1ccAcc-22B.10.000018
ORF1ab/nsp3466P466QcCacAa22B.10.000018
ORF1ab/nsp3466P466LcCacTa22B.1.10.000036
ORF1ab/nsp3466P466del1ccAcc-22B.1.10.000036
ORF1ab/nsp3466P466PccAccG22B.1.10.000036
ORF1ab/nsp3466P466SCcaTca22B.1.10.000036
ORF1ab/nsp3466P466SCcaTca22B.1.1.2840.000215
ORF1ab/nsp3466P466PccAccG22B.1.1.5190.000079
ORF1ab/nsp3466P466del1ccAcc-12B.1.1.70.000001
ORF1ab/nsp3466P466del1Cca-ca12B.1.1.70.000001
ORF1ab/nsp3466P466LcCacTa22B.1.1600.000062
ORF1ab/nsp3466P466SCcaTca22B.1.177.600.000437
ORF1ab/nsp3466P466LcCacTa22B.1.177.620.002384
ORF1ab/nsp3466P466SCcaTca22B.1.177.830.002963
ORF1ab/nsp3466P466del1ccAcc-22B.1.2580.000133
ORF1ab/nsp3466P466LcCacTa22B.1.3510.000059
ORF1ab/nsp3466P466PccAccG22B.1.362.20.009434
ORF1ab/nsp3466P466LcCacTa22B.1.4270.000101
ORF1ab/nsp3466P466SCcaTca22B.1.5250.000226
ORF1ab/nsp3466P466SCcaTca22B.1.6280.000705
ORF1ab/nsp3466P466PccAccT22C.300.003454
ORF1ab/nsp3466P466LcCacTa22P.1.140.000096
ORF1ab/nsp3466P466SCcaTca22P.1.140.000096
ORF1ab/nsp3466P466LcCacTa22P.1.150.000465
ORF1ab/nsp3466P466SCcaTca22Q.80.00033
ORF1ab/nsp3466P466PccAccT110.055556
ORF1ab/nsp3466P466LcCacTa11A0.000387
ORF1ab/nsp3466P466TCcaAca11A0.000387
ORF1ab/nsp3466P466PccAccT11AE.80.000489
ORF1ab/nsp3466P466PccAccG11AK.10.012658
ORF1ab/nsp3466P466del2cCAc--11All0
ORF1ab/nsp3466P466KCCaAAa11All0
ORF1ab/nsp3466P466LcCacTa11AY.100.00053
ORF1ab/nsp3466P466PccAccG11AY.100.00053
ORF1ab/nsp3466P466PccAccG11AY.1000.000046
ORF1ab/nsp3466P466TCcaAca11AY.1030.000006
ORF1ab/nsp3466P466LcCacTa11AY.1060.000335
ORF1ab/nsp3466P466SCcaTca11AY.1100.000113
ORF1ab/nsp3466P466PccAccG11AY.1160.000287
ORF1ab/nsp3466P466SCcaTca11AY.1160.000287
ORF1ab/nsp3466P466LcCacTa11AY.116.10.000311
ORF1ab/nsp3466P466LcCacTa11AY.1200.000037
ORF1ab/nsp3466P466delCCA---11AY.1200.000037
ORF1ab/nsp3466P466PccAccG11AY.120.10.000321
ORF1ab/nsp3466P466LcCacTa11AY.130.000161
ORF1ab/nsp3466P466PccAccG11AY.140.000088
ORF1ab/nsp3466P466PccAccC11AY.160.00038
ORF1ab/nsp3466P466TCcaAca11AY.200.000039
ORF1ab/nsp3466P466LcCacTa11AY.200.000039
ORF1ab/nsp3466P466SCcaTca11AY.200.000039
ORF1ab/nsp3466P466SCcaTca11AY.230.00007
ORF1ab/nsp3466P466LcCacTa11AY.230.00007
ORF1ab/nsp3466P466PccAccG11AY.230.00007
ORF1ab/nsp3466P466del1ccAcc-11AY.250.000006
ORF1ab/nsp3466P466ACcaGca11AY.250.000006
ORF1ab/nsp3466P466SCcaTca11AY.260.000028
ORF1ab/nsp3466P466LcCacTa11AY.340.000097
ORF1ab/nsp3466P466SCcaTca11AY.34.10.00051
ORF1ab/nsp3466P466SCcaTca11AY.350.000233
ORF1ab/nsp3466P466LcCacTa11AY.39.10.00004
ORF1ab/nsp3466P466ACcaGca11AY.40.000002
ORF1ab/nsp3466P466PccAccG11AY.4.20.000022
ORF1ab/nsp3466P466PccAccT11AY.4.50.000107
ORF1ab/nsp3466P466delCCA---11AY.4.50.000107
ORF1ab/nsp3466P466PccAccG11AY.400.000964
ORF1ab/nsp3466P466SCcaTca11AY.420.00004
ORF1ab/nsp3466P466PccAccG11AY.420.00004
ORF1ab/nsp3466P466KCCaAAa11AY.430.000004
ORF1ab/nsp3466P466delCCA---11AY.430.000004
ORF1ab/nsp3466P466del1ccAcc-11AY.440.000006
ORF1ab/nsp3466P466PccAccG11AY.46.20.000635
ORF1ab/nsp3466P466QcCacAa11AY.46.20.000635
ORF1ab/nsp3466P466SCcaTca11AY.46.40.000165
ORF1ab/nsp3466P466SCcaTca11AY.46.60.000072
ORF1ab/nsp3466P466delCCA---11AY.46.60.000072
ORF1ab/nsp3466P466LcCacTa11AY.50.000021
ORF1ab/nsp3466P466PccAccG11AY.5.30.000337
ORF1ab/nsp3466P466TCcaAca11AY.520.000814
ORF1ab/nsp3466P466PccAccG11AY.580.000907
ORF1ab/nsp3466P466PccAccG11AY.650.000533
ORF1ab/nsp3466P466delCCA---11AY.670.000464
ORF1ab/nsp3466P466LcCacTa11AY.70.000196
ORF1ab/nsp3466P466PccAccG11AY.7.20.000559
ORF1ab/nsp3466P466SCcaTca11AY.720.001361
ORF1ab/nsp3466P466SCcaTca11AY.75.10.00018
ORF1ab/nsp3466P466SCcaTca11AY.800.001129
ORF1ab/nsp3466P466PccAccG11AY.90.000068
ORF1ab/nsp3466P466SCcaTca11AY.90.000068
ORF1ab/nsp3466P466SCcaTca11AY.920.000287
ORF1ab/nsp3466P466TCcaAca11AY.930.000273
ORF1ab/nsp3466P466QcCacAa11AY.98.10.000048
ORF1ab/nsp3466P466PccAccG11AY.99.20.000092
ORF1ab/nsp3466P466delCCA---11AY.99.20.000092
ORF1ab/nsp3466P466QcCAcAG11AY.99.20.000092
ORF1ab/nsp3466P466TCcaAca11B0.000128
ORF1ab/nsp3466P466PccAccG11B0.000128
ORF1ab/nsp3466P466LcCacTa11B0.000128
ORF1ab/nsp3466P466SCcaTca11B.1.1.1130.006993
ORF1ab/nsp3466P466SCcaTca11B.1.1.1410.002012
ORF1ab/nsp3466P466PccAccG11B.1.1.1760.000439
ORF1ab/nsp3466P466LcCacTa11B.1.1.2070.001182
ORF1ab/nsp3466P466LcCacTa11B.1.1.2140.000055
ORF1ab/nsp3466P466PccAccT11B.1.1.2220.000204
ORF1ab/nsp3466P466PccAccG11B.1.1.2430.004082
ORF1ab/nsp3466P466SCcaTca11B.1.1.2770.000759
ORF1ab/nsp3466P466SCcaTca11B.1.1.3430.020833
ORF1ab/nsp3466P466SCcaTca11B.1.1.370.000193
ORF1ab/nsp3466P466SCcaTca11B.1.1.390.00051
ORF1ab/nsp3466P466PccAccC11B.1.1.4200.001006
ORF1ab/nsp3466P466PccAccG11B.1.1.4340.000349
ORF1ab/nsp3466P466SCcaTca11B.1.1.4480.002033
ORF1ab/nsp3466P466SCcaTca11B.1.1.5180.006329
ORF1ab/nsp3466P466delCCA---11B.1.1.5190.00004
ORF1ab/nsp3466P466del2cCAc--11B.1.1.70.000001
ORF1ab/nsp3466P466TCcaAca11B.1.1.70.000001
ORF1ab/nsp3466P466QcCacAa11B.1.1.70.000001
ORF1ab/nsp3466P466PccAccG11B.1.1080.005814
ORF1ab/nsp3466P466SCcaTca11B.1.1390.000733
ORF1ab/nsp3466P466SCcaTca11B.1.1600.000031
ORF1ab/nsp3466P466del1ccAcc-11B.1.1770.000013
ORF1ab/nsp3466P466SCcaTca11B.1.177.120.000152
ORF1ab/nsp3466P466delCCA---11B.1.177.160.000664
ORF1ab/nsp3466P466LcCacTa11B.1.177.210.000076
ORF1ab/nsp3466P466delCCA---11B.1.177.40.000211
ORF1ab/nsp3466P466SCcaTca11B.1.177.410.0025
ORF1ab/nsp3466P466LcCacTa11B.1.177.440.000519
ORF1ab/nsp3466P466SCcaTca11B.1.177.450.000381
ORF1ab/nsp3466P466SCcaTca11B.1.177.540.000606
ORF1ab/nsp3466P466LcCacTa11B.1.177.80.000752
ORF1ab/nsp3466P466PccAccG11B.1.1820.007246
ORF1ab/nsp3466P466ACcaGca11B.1.20.000009
ORF1ab/nsp3466P466LcCacTa11B.1.214.20.0006
ORF1ab/nsp3466P466delCCA---11B.1.2210.000071
ORF1ab/nsp3466P466PccAccG11B.1.2220.001692
ORF1ab/nsp3466P466LcCacTa11B.1.2340.000132
ORF1ab/nsp3466P466PccAccT11B.1.2430.00007
ORF1ab/nsp3466P466LcCacTa11B.1.258.190.007092
ORF1ab/nsp3466P466TCcaAca11B.1.3010.005917
ORF1ab/nsp3466P466SCcaTca11B.1.3380.008621
ORF1ab/nsp3466P466PccAccG11B.1.351.30.000876
ORF1ab/nsp3466P466delCCA---11B.1.360.000146
ORF1ab/nsp3466P466SCcaTca11B.1.360.000146
ORF1ab/nsp3466P466PccAccG11B.1.360.000146
ORF1ab/nsp3466P466LcCacTa11B.1.360.000146
ORF1ab/nsp3466P466SCcaTca11B.1.36.80.001
ORF1ab/nsp3466P466SCcaTca11B.1.3690.000285
ORF1ab/nsp3466P466SCcaTca11B.1.4000.000429
ORF1ab/nsp3466P466LcCacTa11B.1.4160.001269
ORF1ab/nsp3466P466SCcaTca11B.1.416.10.001563
ORF1ab/nsp3466P466SCcaTca11B.1.4280.00102
ORF1ab/nsp3466P466delCCA---11B.1.4290.000024
ORF1ab/nsp3466P466QcCacAa11B.1.4290.000024
ORF1ab/nsp3466P466LcCacTa11B.1.438.10.000107
ORF1ab/nsp3466P466SCcaTca11B.1.4740.001901
ORF1ab/nsp3466P466SCcaTca11B.1.4970.000315
ORF1ab/nsp3466P466SCcaTca11B.1.5170.000427
ORF1ab/nsp3466P466PccAccG11B.1.5260.000024
ORF1ab/nsp3466P466SCcaTca11B.1.5510.00129
ORF1ab/nsp3466P466SCcaTca11B.1.5610.000397
ORF1ab/nsp3466P466PccAccG11B.1.575.20.004808
ORF1ab/nsp3466P466SCcaTca11B.1.5770.000687
ORF1ab/nsp3466P466SCcaTca11B.1.5820.000491
ORF1ab/nsp3466P466TCcaAca11B.1.5950.000261
ORF1ab/nsp3466P466ACcaGca11B.1.5960.000087
ORF1ab/nsp3466P466TCcaAca11B.1.617.20.000004
ORF1ab/nsp3466P466SCcaTca11B.1.6190.000871
ORF1ab/nsp3466P466SCcaTca11B.1.6210.000089
ORF1ab/nsp3466P466PccAccG11B.1.6210.000089
ORF1ab/nsp3466P466TCcaAca11B.1.6230.000536
ORF1ab/nsp3466P466SCcaTca11B.1.6270.00202
ORF1ab/nsp3466P466LcCacTa11B.1.930.000934
ORF1ab/nsp3466P466SCcaTca11B.400.000364
ORF1ab/nsp3466P466RcCacGa11B.550.00295
ORF1ab/nsp3466P466delCCA---11B.570.015152
ORF1ab/nsp3466P466PccAccC11C.350.000774
ORF1ab/nsp3466P466PccAccG11C.370.000116
ORF1ab/nsp3466P466LcCacTa11D.20.000075
ORF1ab/nsp3466P466LcCacTa11P.10.000016
ORF1ab/nsp3466P466delCCA---11P.10.000016
ORF1ab/nsp3466P466SCcaTca11P.1.170.000162
ORF1ab/nsp3466P466PccAccG11P.20.000187
ORF1ab/nsp3466P466PccAccC11Q.10.000126
ORF1ab/nsp3466P466delCCA---11Q.20.000613
ORF1ab/nsp3466P466del1ccAcc-11Q.20.000613
ORF1ab/nsp3466P466LcCacTa11Q.80.000165
ORF1ab/nsp3466P466LcCacTa11R.10.00009
ORF1ab/nsp3466P466PccAccG11R.10.00009
ORF1ab/nsp3466P466delCCA---11R.10.00009
ORF1ab/nsp3466P466delCCA---11U.30.003861
ORF1ab/nsp3466P466SCcaTca11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.