CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 460

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3460F460FF1278FsynttCttT2451245114097-4099
ORF1ab/nsp3460F460LF1278LnonsynTtcCtc43280.6511634097-4099
ORF1ab/nsp3460F460LF1278LnonsynttCttA43120.279074097-4099
ORF1ab/nsp3460F460LF1278LnonsynttCttG4320.04651164097-4099
ORF1ab/nsp3460F460LF1278LnonsynTtCCtT4310.02325584097-4099
ORF1ab/nsp3460F460SF1278SnonsyntTctCc38370.9736844097-4099
ORF1ab/nsp3460F460SF1278SnonsyntTCtCT3810.02631584097-4099
ORF1ab/nsp3460F460CF1278CnonsyntTctGc34330.9705884097-4099
ORF1ab/nsp3460F460CF1278CnonsyntTCtGT3410.02941184097-4099
ORF1ab/nsp3460F460IF1278InonsynTtcAtc272714097-4099
ORF1ab/nsp3460F460delF1278deldelTTC---272714097-4099
ORF1ab/nsp3460F460VF1278VnonsynTtCGtT25180.724097-4099
ORF1ab/nsp3460F460VF1278VnonsynTtcGtc2570.284097-4099
ORF1ab/nsp3460F460del1F1278del1delttCtt-530.64097-4099
ORF1ab/nsp3460F460del1F1278del1delTtC-tT510.24097-4099
ORF1ab/nsp3460F460del1F1278del1delTtc-tc510.24097-4099
ORF1ab/nsp3460F460YF1278YnonsyntTctAc4414097-4099
ORF1ab/nsp3460F460RF1278RnonsynTTCCGT210.54097-4099
ORF1ab/nsp3460F460RF1278RnonsynTTcCGc210.54097-4099
ORF1ab/nsp3460F460PF1278PnonsynTTcCCc210.54097-4099
ORF1ab/nsp3460F460PF1278PnonsynTTCCCT210.54097-4099

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3460F460FttCttT24512451All0.000469
ORF1ab/nsp3460F460FttCttT13721372B.1.1.70.001228
ORF1ab/nsp3460F460FttCttT227227B.1.5260.005336
ORF1ab/nsp3460F460FttCttT136136B.1.36.180.057143
ORF1ab/nsp3460F460FttCttT107107AY.40.000167
ORF1ab/nsp3460F460FttCttT8989AY.250.000535
ORF1ab/nsp3460F460LTtcCtc2843All0.000005
ORF1ab/nsp3460F460LttCttA1243All0.000002
ORF1ab/nsp3460F460LttCttG243All0
ORF1ab/nsp3460F460LTtCCtT143All0
ORF1ab/nsp3460F460FttCttT4343AY.260.001217
ORF1ab/nsp3460F460StTctCc3738All0.000007
ORF1ab/nsp3460F460StTCtCT138All0
ORF1ab/nsp3460F460CtTctGc3334All0.000006
ORF1ab/nsp3460F460CtTCtGT134All0
ORF1ab/nsp3460F460FttCttT2929AY.310.537037
ORF1ab/nsp3460F460ITtcAtc2727All0.000005
ORF1ab/nsp3460F460delTTC---2727All0.000005
ORF1ab/nsp3460F460FttCttT2727B.1.3990.052224
ORF1ab/nsp3460F460CtTctGc2626AY.40.00004
ORF1ab/nsp3460F460VTtCGtT1825All0.000003
ORF1ab/nsp3460F460VTtcGtc725All0.000001
ORF1ab/nsp3460F460FttCttT2525B.1.20.00022
ORF1ab/nsp3460F460FttCttT2121AY.7.10.002367
ORF1ab/nsp3460F460FttCttT2121B.1.617.20.000079
ORF1ab/nsp3460F460FttCttT1919B.1.5250.00215
ORF1ab/nsp3460F460FttCttT1818AY.430.00008
ORF1ab/nsp3460F460FttCttT1818B.1.6370.001315
ORF1ab/nsp3460F460VTtCGtT1717B.1.4290.0004
ORF1ab/nsp3460F460FttCttT1414B.10.000128
ORF1ab/nsp3460F460FttCttT1414C.370.001625
ORF1ab/nsp3460F460StTctCc1313B.1.1.70.000012
ORF1ab/nsp3460F460FttCttT1111AY.1030.000068
ORF1ab/nsp3460F460FttCttT1111AY.4.20.000239
ORF1ab/nsp3460F460FttCttT1010AY.470.000311
ORF1ab/nsp3460F460FttCttT1010B.1.3510.000297
ORF1ab/nsp3460F460FttCttT99AY.390.000222
ORF1ab/nsp3460F460FttCttT99AY.440.000055
ORF1ab/nsp3460F460FttCttT99B.1.1.5190.000357
ORF1ab/nsp3460F460delTTC---99B.1.1.70.000008
ORF1ab/nsp3460F460ITtcAtc99B.1.617.20.000034
ORF1ab/nsp3460F460FttCttT88P.10.000126
ORF1ab/nsp3460F460LTtcCtc67B.1.1.70.000005
ORF1ab/nsp3460F460LttCttA17B.1.1.70.000001
ORF1ab/nsp3460F460FttCttT77B.1.1600.000218
ORF1ab/nsp3460F460LttCttA77P.10.00011
ORF1ab/nsp3460F460FttCttT66AY.1200.000223
ORF1ab/nsp3460F460FttCttT66AY.200.000233
ORF1ab/nsp3460F460FttCttT66B.1.5670.02
ORF1ab/nsp3460F460del1ttCtt-35All0.000001
ORF1ab/nsp3460F460del1TtC-tT15All0
ORF1ab/nsp3460F460del1Ttc-tc15All0
ORF1ab/nsp3460F460FttCttT55AY.1210.000677
ORF1ab/nsp3460F460LTtcCtc55AY.30.00005
ORF1ab/nsp3460F460FttCttT55AY.50.000103
ORF1ab/nsp3460F460FttCttT55B.1.10.000091
ORF1ab/nsp3460F460FttCttT55B.1.2210.000355
ORF1ab/nsp3460F460YtTctAc44All0.000001
ORF1ab/nsp3460F460FttCttT44AY.1020.000106
ORF1ab/nsp3460F460ITtcAtc44AY.1020.000106
ORF1ab/nsp3460F460StTctCc44AY.1030.000025
ORF1ab/nsp3460F460FttCttT44AY.1160.001147
ORF1ab/nsp3460F460StTctCc44AY.250.000024
ORF1ab/nsp3460F460FttCttT44AY.30.00004
ORF1ab/nsp3460F460FttCttT44AY.330.000267
ORF1ab/nsp3460F460LTtcCtc44AY.40.000006
ORF1ab/nsp3460F460FttCttT44AY.46.60.000289
ORF1ab/nsp3460F460FttCttT44B.1.1.2220.000816
ORF1ab/nsp3460F460FttCttT44B.1.1.2530.010025
ORF1ab/nsp3460F460ITtcAtc44B.1.1.70.000004
ORF1ab/nsp3460F460FttCttT44B.1.1770.000053
ORF1ab/nsp3460F460FttCttT44B.1.2430.000278
ORF1ab/nsp3460F460FttCttT44B.1.369.10.108108
ORF1ab/nsp3460F460FttCttT44B.1.6210.000354
ORF1ab/nsp3460F460FttCttT44Q.20.002454
ORF1ab/nsp3460F460ITtcAtc33AY.1030.000019
ORF1ab/nsp3460F460FttCttT33AY.1130.000427
ORF1ab/nsp3460F460FttCttT33AY.140.000264
ORF1ab/nsp3460F460delTTC---33B.10.000027
ORF1ab/nsp3460F460FttCttT33B.1.1.3180.000905
ORF1ab/nsp3460F460FttCttT33B.1.1.3860.2
ORF1ab/nsp3460F460del1ttCtt-33B.1.1.70.000003
ORF1ab/nsp3460F460FttCttT33B.1.4270.000151
ORF1ab/nsp3460F460FttCttT33B.1.4410.028846
ORF1ab/nsp3460F460CtTctGc33B.1.617.20.000011
ORF1ab/nsp3460F460FttCttT33Q.30.000435
ORF1ab/nsp3460F460FttCttT33Q.80.000495
ORF1ab/nsp3460F460CtTCtGT120.055556
ORF1ab/nsp3460F460CtTctGc120.055556
ORF1ab/nsp3460F460RTTcCGc120.055556
ORF1ab/nsp3460F460RTTCCGT120.055556
ORF1ab/nsp3460F460LTtCCtT120.055556
ORF1ab/nsp3460F460StTCtCT120.055556
ORF1ab/nsp3460F460StTctCc120.055556
ORF1ab/nsp3460F460PTTCCCT120.055556
ORF1ab/nsp3460F460LTtcCtc120.055556
ORF1ab/nsp3460F460PTTcCCc120.055556
ORF1ab/nsp3460F460FttCttT22A.2.50.000998
ORF1ab/nsp3460F460PTTcCCc12All0
ORF1ab/nsp3460F460PTTCCCT12All0
ORF1ab/nsp3460F460RTTcCGc12All0
ORF1ab/nsp3460F460RTTCCGT12All0
ORF1ab/nsp3460F460FttCttT22AY.1060.00067
ORF1ab/nsp3460F460FttCttT22AY.1170.000169
ORF1ab/nsp3460F460LTtcCtc22AY.250.000012
ORF1ab/nsp3460F460StTctCc22AY.450.000243
ORF1ab/nsp3460F460FttCttT22AY.530.000575
ORF1ab/nsp3460F460FttCttT22AY.690.000373
ORF1ab/nsp3460F460CtTctGc22AY.7.10.000225
ORF1ab/nsp3460F460FttCttT22AY.770.002255
ORF1ab/nsp3460F460YtTctAc22B.10.000018
ORF1ab/nsp3460F460StTctCc22B.10.000018
ORF1ab/nsp3460F460LttCttA22B.10.000018
ORF1ab/nsp3460F460FttCttT22B.1.1.1590.009346
ORF1ab/nsp3460F460LttCttG22B.1.160.70.004158
ORF1ab/nsp3460F460FttCttT22B.1.177.210.000153
ORF1ab/nsp3460F460FttCttT22B.1.177.70.00033
ORF1ab/nsp3460F460FttCttT22B.1.258.170.000208
ORF1ab/nsp3460F460FttCttT22B.1.360.000292
ORF1ab/nsp3460F460LttCttA12B.1.4290.000024
ORF1ab/nsp3460F460LTtcCtc12B.1.4290.000024
ORF1ab/nsp3460F460ITtcAtc22B.1.5260.000047
ORF1ab/nsp3460F460FttCttT22B.1.575.10.004878
ORF1ab/nsp3460F460FttCttT22P.1.140.000096
ORF1ab/nsp3460F460FttCttT110.055556
ORF1ab/nsp3460F460FttCttT11A.210.00277
ORF1ab/nsp3460F460StTctCc11AY.1020.000027
ORF1ab/nsp3460F460del1Ttc-tc11AY.1030.000006
ORF1ab/nsp3460F460FttCttT11AY.1090.00074
ORF1ab/nsp3460F460FttCttT11AY.1180.000063
ORF1ab/nsp3460F460delTTC---11AY.1200.000037
ORF1ab/nsp3460F460FttCttT11AY.120.2.10.000498
ORF1ab/nsp3460F460FttCttT11AY.160.00038
ORF1ab/nsp3460F460VTtcGtc11AY.200.000039
ORF1ab/nsp3460F460FttCttT11AY.210.001898
ORF1ab/nsp3460F460FttCttT11AY.230.00007
ORF1ab/nsp3460F460FttCttT11AY.240.000431
ORF1ab/nsp3460F460FttCttT11AY.290.000016
ORF1ab/nsp3460F460LTtcCtc11AY.330.000067
ORF1ab/nsp3460F460FttCttT11AY.340.000097
ORF1ab/nsp3460F460CtTctGc11AY.370.000316
ORF1ab/nsp3460F460ITtcAtc11AY.390.000025
ORF1ab/nsp3460F460FttCttT11AY.39.10.00004
ORF1ab/nsp3460F460StTctCc11AY.40.000002
ORF1ab/nsp3460F460delTTC---11AY.40.000002
ORF1ab/nsp3460F460StTctCc11AY.4.20.000022
ORF1ab/nsp3460F460FttCttT11AY.4.50.000107
ORF1ab/nsp3460F460VTtcGtc11AY.440.000006
ORF1ab/nsp3460F460ITtcAtc11AY.450.000122
ORF1ab/nsp3460F460LTtcCtc11AY.460.000104
ORF1ab/nsp3460F460VTtcGtc11AY.46.20.000635
ORF1ab/nsp3460F460delTTC---11AY.46.60.000072
ORF1ab/nsp3460F460ITtcAtc11AY.50.000021
ORF1ab/nsp3460F460StTctCc11AY.5.30.000337
ORF1ab/nsp3460F460FttCttT11AY.5.40.000277
ORF1ab/nsp3460F460YtTctAc11AY.540.000095
ORF1ab/nsp3460F460FttCttT11AY.590.00053
ORF1ab/nsp3460F460delTTC---11AY.670.000464
ORF1ab/nsp3460F460FttCttT11AY.70.000196
ORF1ab/nsp3460F460FttCttT11AY.750.000056
ORF1ab/nsp3460F460FttCttT11AY.780.001541
ORF1ab/nsp3460F460FttCttT11AY.830.001724
ORF1ab/nsp3460F460FttCttT11AY.980.000079
ORF1ab/nsp3460F460FttCttT11AY.98.10.000048
ORF1ab/nsp3460F460delTTC---11B0.000128
ORF1ab/nsp3460F460StTctCc11B.1.10.000018
ORF1ab/nsp3460F460LTtcCtc11B.1.1.1210.002427
ORF1ab/nsp3460F460FttCttT11B.1.1.1710.003676
ORF1ab/nsp3460F460LTtcCtc11B.1.1.2140.000055
ORF1ab/nsp3460F460FttCttT11B.1.1.2370.005405
ORF1ab/nsp3460F460FttCttT11B.1.1.2630.001558
ORF1ab/nsp3460F460FttCttT11B.1.1.2770.000759
ORF1ab/nsp3460F460FttCttT11B.1.1.280.000311
ORF1ab/nsp3460F460FttCttT11B.1.1.2840.000107
ORF1ab/nsp3460F460FttCttT11B.1.1.2940.001266
ORF1ab/nsp3460F460FttCttT11B.1.1.330.000421
ORF1ab/nsp3460F460FttCttT11B.1.1.3440.010753
ORF1ab/nsp3460F460FttCttT11B.1.1.3560.008547
ORF1ab/nsp3460F460FttCttT11B.1.1.370.000193
ORF1ab/nsp3460F460StTctCc11B.1.1.5190.00004
ORF1ab/nsp3460F460delTTC---11B.1.1.5190.00004
ORF1ab/nsp3460F460VTtcGtc11B.1.1.70.000001
ORF1ab/nsp3460F460FttCttT11B.1.1.700.000341
ORF1ab/nsp3460F460FttCttT11B.1.1260.001276
ORF1ab/nsp3460F460LTtcCtc11B.1.160.260.002421
ORF1ab/nsp3460F460FttCttT11B.1.177.120.000152
ORF1ab/nsp3460F460delTTC---11B.1.177.160.000664
ORF1ab/nsp3460F460delTTC---11B.1.177.40.000211
ORF1ab/nsp3460F460FttCttT11B.1.177.600.000218
ORF1ab/nsp3460F460FttCttT11B.1.177.670.007634
ORF1ab/nsp3460F460FttCttT11B.1.177.690.001484
ORF1ab/nsp3460F460FttCttT11B.1.1940.04
ORF1ab/nsp3460F460ITtcAtc11B.1.20.000009
ORF1ab/nsp3460F460StTctCc11B.1.20.000009
ORF1ab/nsp3460F460LTtcCtc11B.1.20.000009
ORF1ab/nsp3460F460del1TtC-tT11B.1.20.000009
ORF1ab/nsp3460F460FttCttT11B.1.2060.000816
ORF1ab/nsp3460F460VTtcGtc11B.1.2210.000071
ORF1ab/nsp3460F460delTTC---11B.1.2210.000071
ORF1ab/nsp3460F460LTtcCtc11B.1.2360.002053
ORF1ab/nsp3460F460delTTC---11B.1.360.000146
ORF1ab/nsp3460F460FttCttT11B.1.36.190.009259
ORF1ab/nsp3460F460YtTctAc11B.1.36.220.001208
ORF1ab/nsp3460F460VTtCGtT11B.1.3670.000792
ORF1ab/nsp3460F460LTtcCtc11B.1.3690.000285
ORF1ab/nsp3460F460FttCttT11B.1.3750.00082
ORF1ab/nsp3460F460FttCttT11B.1.4290.000024
ORF1ab/nsp3460F460delTTC---11B.1.4290.000024
ORF1ab/nsp3460F460FttCttT11B.1.5410.004425
ORF1ab/nsp3460F460StTctCc11B.1.5820.000491
ORF1ab/nsp3460F460FttCttT11B.1.5960.000087
ORF1ab/nsp3460F460StTctCc11B.1.617.10.000129
ORF1ab/nsp3460F460VTtcGtc11B.1.617.20.000004
ORF1ab/nsp3460F460StTctCc11B.1.617.20.000004
ORF1ab/nsp3460F460LTtcCtc11B.1.617.20.000004
ORF1ab/nsp3460F460delTTC---11B.570.015152
ORF1ab/nsp3460F460FttCttT11N.50.001767
ORF1ab/nsp3460F460FttCttT11N.90.005952
ORF1ab/nsp3460F460StTctCc11P.10.000016
ORF1ab/nsp3460F460delTTC---11P.10.000016
ORF1ab/nsp3460F460ITtcAtc11P.10.000016
ORF1ab/nsp3460F460FttCttT11P.1.120.000484
ORF1ab/nsp3460F460FttCttT11P.1.150.000232
ORF1ab/nsp3460F460VTtcGtc11P.1.170.000162
ORF1ab/nsp3460F460LttCttA11Q.10.000126
ORF1ab/nsp3460F460FttCttT11Q.10.000126
ORF1ab/nsp3460F460FttCttT11Q.40.000455
ORF1ab/nsp3460F460delTTC---11R.10.00009
ORF1ab/nsp3460F460delTTC---11U.30.003861