CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 457

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3457D457DD1275DsyngaCgaT73573514088-4090
ORF1ab/nsp3457D457ND1275NnonsynGacAac1471460.9931974088-4090
ORF1ab/nsp3457D457ND1275NnonsynGaCAaT14710.006802724088-4090
ORF1ab/nsp3457D457GD1275GnonsyngAcgGc37360.9729734088-4090
ORF1ab/nsp3457D457GD1275GnonsyngACgGT3710.0270274088-4090
ORF1ab/nsp3457D457AD1275AnonsyngAcgCc32310.968754088-4090
ORF1ab/nsp3457D457AD1275AnonsyngACgCA3210.031254088-4090
ORF1ab/nsp3457D457YD1275YnonsynGacTac282814088-4090
ORF1ab/nsp3457D457delD1275deldelGAC---242414088-4090
ORF1ab/nsp3457D457ED1275EnonsyngaCgaA15130.8666674088-4090
ORF1ab/nsp3457D457ED1275EnonsyngaCgaG1520.1333334088-4090
ORF1ab/nsp3457D457HD1275HnonsynGacCac3314088-4090
ORF1ab/nsp3457D457SD1275SnonsynGAcAGc210.54088-4090
ORF1ab/nsp3457D457SD1275SnonsynGACAGT210.54088-4090
ORF1ab/nsp3457D457VD1275VnonsyngAcgTc1114088-4090

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3457D457DgaCgaT735735All0.000141
ORF1ab/nsp3457D457NGacAac146147All0.000028
ORF1ab/nsp3457D457NGaCAaT1147All0
ORF1ab/nsp3457D457DgaCgaT104104B.1.1.70.000093
ORF1ab/nsp3457D457DgaCgaT6767B.1.617.20.000252
ORF1ab/nsp3457D457DgaCgaT5959AY.40.000092
ORF1ab/nsp3457D457DgaCgaT4040P.10.00063
ORF1ab/nsp3457D457GgAcgGc3637All0.000007
ORF1ab/nsp3457D457GgACgGT137All0
ORF1ab/nsp3457D457AgAcgCc3132All0.000006
ORF1ab/nsp3457D457AgACgCA132All0
ORF1ab/nsp3457D457DgaCgaT3232B.1.1061
ORF1ab/nsp3457D457NGacAac3131B.1.10.000562
ORF1ab/nsp3457D457DgaCgaT3030AY.50.000619
ORF1ab/nsp3457D457DgaCgaT2929B.1.10.000526
ORF1ab/nsp3457D457YGacTac2828All0.000005
ORF1ab/nsp3457D457DgaCgaT2828AY.440.00017
ORF1ab/nsp3457D457delGAC---2424All0.000005
ORF1ab/nsp3457D457DgaCgaT2424AY.430.000106
ORF1ab/nsp3457D457DgaCgaT2323AY.750.001289
ORF1ab/nsp3457D457DgaCgaT2323B.1.20.000203
ORF1ab/nsp3457D457DgaCgaT2121AY.1000.000966
ORF1ab/nsp3457D457AgAcgCc1717AY.740.001966
ORF1ab/nsp3457D457NGacAac1616AY.250.000096
ORF1ab/nsp3457D457DgaCgaT1616AY.30.000159
ORF1ab/nsp3457D457EgaCgaA1315All0.000002
ORF1ab/nsp3457D457EgaCgaG215All0
ORF1ab/nsp3457D457DgaCgaT1515B.10.000137
ORF1ab/nsp3457D457NGacAac1515B.1.20.000132
ORF1ab/nsp3457D457NGacAac1414AY.750.000784
ORF1ab/nsp3457D457DgaCgaT1212AY.250.000072
ORF1ab/nsp3457D457DgaCgaT1212B.1.2390.014652
ORF1ab/nsp3457D457DgaCgaT1111AY.1020.000292
ORF1ab/nsp3457D457DgaCgaT1111B.1.5250.001245
ORF1ab/nsp3457D457GgAcgGc1010AY.40.000016
ORF1ab/nsp3457D457NGacAac1010B.1.1.70.000009
ORF1ab/nsp3457D457DgaCgaT1010B.1.5260.000235
ORF1ab/nsp3457D457NGacAac99AY.4.20.000195
ORF1ab/nsp3457D457YGacTac99B.10.000082
ORF1ab/nsp3457D457GgAcgGc99B.1.1.70.000008
ORF1ab/nsp3457D457DgaCgaT88P.1.160.002993
ORF1ab/nsp3457D457delGAC---77B.1.1.70.000006
ORF1ab/nsp3457D457DgaCgaT66AY.1030.000037
ORF1ab/nsp3457D457DgaCgaT66B.1.1.3720.004132
ORF1ab/nsp3457D457DgaCgaT66B.1.36.290.003104
ORF1ab/nsp3457D457DgaCgaT66B.1.910.012448
ORF1ab/nsp3457D457DgaCgaT55AY.390.000124
ORF1ab/nsp3457D457DgaCgaT55AY.470.000156
ORF1ab/nsp3457D457EgaCgaA45B.1.1.70.000004
ORF1ab/nsp3457D457EgaCgaG15B.1.1.70.000001
ORF1ab/nsp3457D457DgaCgaT55B.1.1.700.001705
ORF1ab/nsp3457D457DgaCgaT55B.1.3510.000149
ORF1ab/nsp3457D457DgaCgaT55B.1.5240.007032
ORF1ab/nsp3457D457NGacAac44AY.39.10.000158
ORF1ab/nsp3457D457NGacAac44AY.440.000024
ORF1ab/nsp3457D457DgaCgaT44AY.740.000463
ORF1ab/nsp3457D457DgaCgaT44AY.98.10.000194
ORF1ab/nsp3457D457NGacAac44B.1.1.2630.006231
ORF1ab/nsp3457D457DgaCgaT44B.1.1600.000125
ORF1ab/nsp3457D457GgAcgGc44B.1.2580.000266
ORF1ab/nsp3457D457DgaCgaT330.166667
ORF1ab/nsp3457D457HGacCac33All0.000001
ORF1ab/nsp3457D457NGacAac33AY.1030.000019
ORF1ab/nsp3457D457AgAcgCc33AY.1030.000019
ORF1ab/nsp3457D457DgaCgaT33AY.1190.000106
ORF1ab/nsp3457D457DgaCgaT33AY.16.10.00141
ORF1ab/nsp3457D457DgaCgaT33AY.330.0002
ORF1ab/nsp3457D457AgAcgCc33AY.40.000005
ORF1ab/nsp3457D457delGAC---33B.10.000027
ORF1ab/nsp3457D457DgaCgaT33B.1.1.5190.000119
ORF1ab/nsp3457D457NGacAac33B.1.1600.000094
ORF1ab/nsp3457D457NGacAac33B.1.1770.00004
ORF1ab/nsp3457D457GgAcgGc33B.1.177.820.001432
ORF1ab/nsp3457D457AgAcgCc33B.1.20.000026
ORF1ab/nsp3457D457DgaCgaT33B.1.258.110.001189
ORF1ab/nsp3457D457DgaCgaT33B.1.351.30.002629
ORF1ab/nsp3457D457DgaCgaT33B.1.36.180.001261
ORF1ab/nsp3457D457DgaCgaT33B.1.4270.000151
ORF1ab/nsp3457D457NGacAac33B.1.617.20.000011
ORF1ab/nsp3457D457DgaCgaT33D.20.000225
ORF1ab/nsp3457D457YGacTac33D.20.000225
ORF1ab/nsp3457D457SGACAGT120.055556
ORF1ab/nsp3457D457NGacAac120.055556
ORF1ab/nsp3457D457GgACgGT120.055556
ORF1ab/nsp3457D457NGaCAaT120.055556
ORF1ab/nsp3457D457SGAcAGc120.055556
ORF1ab/nsp3457D457GgAcgGc120.055556
ORF1ab/nsp3457D457SGAcAGc12All0
ORF1ab/nsp3457D457SGACAGT12All0
ORF1ab/nsp3457D457DgaCgaT22AY.1200.000074
ORF1ab/nsp3457D457DgaCgaT22AY.200.000078
ORF1ab/nsp3457D457DgaCgaT22AY.29.10.000441
ORF1ab/nsp3457D457NGacAac22AY.30.00002
ORF1ab/nsp3457D457EgaCgaA22AY.390.000049
ORF1ab/nsp3457D457DgaCgaT22AY.39.10.000079
ORF1ab/nsp3457D457EgaCgaA22AY.40.000003
ORF1ab/nsp3457D457YGacTac22AY.40.000003
ORF1ab/nsp3457D457NGacAac22AY.40.000003
ORF1ab/nsp3457D457DgaCgaT22AY.4.20.000043
ORF1ab/nsp3457D457YGacTac22AY.430.000009
ORF1ab/nsp3457D457DgaCgaT22AY.640.00119
ORF1ab/nsp3457D457DgaCgaT22AY.980.000158
ORF1ab/nsp3457D457YGacTac22B0.000256
ORF1ab/nsp3457D457DgaCgaT22B.1.1.1530.002191
ORF1ab/nsp3457D457DgaCgaT22B.1.1.2070.002364
ORF1ab/nsp3457D457YGacTac22B.1.1.70.000002
ORF1ab/nsp3457D457AgAcgCc22B.1.1.70.000002
ORF1ab/nsp3457D457DgaCgaT22B.1.1770.000026
ORF1ab/nsp3457D457NGacAac22B.1.177.720.00678
ORF1ab/nsp3457D457GgAcgGc22B.1.20.000018
ORF1ab/nsp3457D457DgaCgaT22B.1.2430.000139
ORF1ab/nsp3457D457DgaCgaT22B.1.2580.000133
ORF1ab/nsp3457D457DgaCgaT22B.1.4290.000047
ORF1ab/nsp3457D457DgaCgaT22B.1.4990.002101
ORF1ab/nsp3457D457DgaCgaT22B.1.6370.000146
ORF1ab/nsp3457D457DgaCgaT22C.36.30.001134
ORF1ab/nsp3457D457NGacAac22P.10.000032
ORF1ab/nsp3457D457YGacTac11A0.000387
ORF1ab/nsp3457D457VgAcgTc11All0
ORF1ab/nsp3457D457GgAcgGc11AY.1000.000046
ORF1ab/nsp3457D457NGacAac11AY.1020.000027
ORF1ab/nsp3457D457NGacAac11AY.1080.001103
ORF1ab/nsp3457D457DgaCgaT11AY.110.001339
ORF1ab/nsp3457D457DgaCgaT11AY.1160.000287
ORF1ab/nsp3457D457NGacAac11AY.1170.000085
ORF1ab/nsp3457D457delGAC---11AY.1200.000037
ORF1ab/nsp3457D457DgaCgaT11AY.1210.000135
ORF1ab/nsp3457D457DgaCgaT11AY.140.000088
ORF1ab/nsp3457D457DgaCgaT11AY.230.00007
ORF1ab/nsp3457D457DgaCgaT11AY.290.000016
ORF1ab/nsp3457D457DgaCgaT11AY.3.10.000085
ORF1ab/nsp3457D457NGacAac11AY.300.000396
ORF1ab/nsp3457D457DgaCgaT11AY.340.000097
ORF1ab/nsp3457D457HGacCac11AY.40.000002
ORF1ab/nsp3457D457delGAC---11AY.40.000002
ORF1ab/nsp3457D457EgaCgaG11AY.4.20.000022
ORF1ab/nsp3457D457NGacAac11AY.420.00004
ORF1ab/nsp3457D457YGacTac11AY.440.000006
ORF1ab/nsp3457D457AgAcgCc11AY.440.000006
ORF1ab/nsp3457D457EgaCgaA11AY.440.000006
ORF1ab/nsp3457D457DgaCgaT11AY.450.000122
ORF1ab/nsp3457D457delGAC---11AY.46.60.000072
ORF1ab/nsp3457D457NGacAac11AY.480.000465
ORF1ab/nsp3457D457EgaCgaA11AY.50.000021
ORF1ab/nsp3457D457DgaCgaT11AY.5.40.000277
ORF1ab/nsp3457D457DgaCgaT11AY.500.000799
ORF1ab/nsp3457D457DgaCgaT11AY.530.000288
ORF1ab/nsp3457D457delGAC---11AY.670.000464
ORF1ab/nsp3457D457DgaCgaT11AY.840.000437
ORF1ab/nsp3457D457DgaCgaT11AY.850.000427
ORF1ab/nsp3457D457DgaCgaT11AY.930.000273
ORF1ab/nsp3457D457NGacAac11AY.950.000761
ORF1ab/nsp3457D457DgaCgaT11B0.000128
ORF1ab/nsp3457D457GgAcgGc11B.10.000009
ORF1ab/nsp3457D457AgACgCA11B.10.000009
ORF1ab/nsp3457D457YGacTac11B.1.10.000018
ORF1ab/nsp3457D457DgaCgaT11B.1.1.1760.000439
ORF1ab/nsp3457D457DgaCgaT11B.1.1.2160.00089
ORF1ab/nsp3457D457DgaCgaT11B.1.1.2550.00303
ORF1ab/nsp3457D457DgaCgaT11B.1.1.3170.000412
ORF1ab/nsp3457D457DgaCgaT11B.1.1.3480.000796
ORF1ab/nsp3457D457NGacAac11B.1.1.390.00051
ORF1ab/nsp3457D457DgaCgaT11B.1.1.4340.000349
ORF1ab/nsp3457D457DgaCgaT11B.1.1.4480.002033
ORF1ab/nsp3457D457delGAC---11B.1.1.5190.00004
ORF1ab/nsp3457D457HGacCac11B.1.1.70.000001
ORF1ab/nsp3457D457DgaCgaT11B.1.1390.000733
ORF1ab/nsp3457D457AgAcgCc11B.1.1600.000031
ORF1ab/nsp3457D457GgAcgGc11B.1.1770.000013
ORF1ab/nsp3457D457YGacTac11B.1.1770.000013
ORF1ab/nsp3457D457delGAC---11B.1.177.160.000664
ORF1ab/nsp3457D457delGAC---11B.1.177.40.000211
ORF1ab/nsp3457D457YGacTac11B.1.177.70.000165
ORF1ab/nsp3457D457DgaCgaT11B.1.177.750.001041
ORF1ab/nsp3457D457DgaCgaT11B.1.177.810.000189
ORF1ab/nsp3457D457NGacAac11B.1.177.830.001481
ORF1ab/nsp3457D457DgaCgaT11B.1.1950.005025
ORF1ab/nsp3457D457YGacTac11B.1.20.000009
ORF1ab/nsp3457D457EgaCgaA11B.1.2060.000816
ORF1ab/nsp3457D457DgaCgaT11B.1.214.20.0006
ORF1ab/nsp3457D457delGAC---11B.1.2210.000071
ORF1ab/nsp3457D457NGacAac11B.1.2220.001692
ORF1ab/nsp3457D457NGacAac11B.1.2340.000132
ORF1ab/nsp3457D457DgaCgaT11B.1.2400.000216
ORF1ab/nsp3457D457NGacAac11B.1.2400.000216
ORF1ab/nsp3457D457VgAcgTc11B.1.2400.000216
ORF1ab/nsp3457D457NGacAac11B.1.3490.000715
ORF1ab/nsp3457D457NGacAac11B.1.3510.00003
ORF1ab/nsp3457D457delGAC---11B.1.360.000146
ORF1ab/nsp3457D457DgaCgaT11B.1.4090.000781
ORF1ab/nsp3457D457delGAC---11B.1.4290.000024
ORF1ab/nsp3457D457DgaCgaT11B.1.4330.003195
ORF1ab/nsp3457D457DgaCgaT11B.1.4410.009615
ORF1ab/nsp3457D457NGacAac11B.1.5260.000024
ORF1ab/nsp3457D457GgAcgGc11B.1.5440.006024
ORF1ab/nsp3457D457YGacTac11B.1.5810.009434
ORF1ab/nsp3457D457EgaCgaA11B.1.5960.000087
ORF1ab/nsp3457D457NGacAac11B.1.6090.000479
ORF1ab/nsp3457D457GgAcgGc11B.1.617.20.000004
ORF1ab/nsp3457D457EgaCgaA11B.1.617.20.000004
ORF1ab/nsp3457D457YGacTac11B.1.6230.000536
ORF1ab/nsp3457D457GgAcgGc11B.1.6370.000073
ORF1ab/nsp3457D457delGAC---11B.570.015152
ORF1ab/nsp3457D457DgaCgaT11C.370.000116
ORF1ab/nsp3457D457NGacAac11C.370.000116
ORF1ab/nsp3457D457NGacAac11D.20.000075
ORF1ab/nsp3457D457HGacCac11D.20.000075
ORF1ab/nsp3457D457delGAC---11P.10.000016
ORF1ab/nsp3457D457AgAcgCc11P.10.000016
ORF1ab/nsp3457D457GgAcgGc11P.10.000016
ORF1ab/nsp3457D457DgaCgaT11P.1.140.000048
ORF1ab/nsp3457D457DgaCgaT11P.1.150.000232
ORF1ab/nsp3457D457DgaCgaT11P.20.000187
ORF1ab/nsp3457D457delGAC---11R.10.00009
ORF1ab/nsp3457D457DgaCgaT11R.10.00009
ORF1ab/nsp3457D457delGAC---11U.30.003861