CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 446 | H446H | H1264H | syn | caT | caC | 2380 | 2380 | 1 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446Y | H1264Y | nonsyn | Cat | Tat | 729 | 729 | 1 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446del | H1264del | del | CAT | --- | 30 | 30 | 1 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446Q | H1264Q | nonsyn | caT | caG | 22 | 14 | 0.636364 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446Q | H1264Q | nonsyn | caT | caA | 22 | 8 | 0.363636 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446L | H1264L | nonsyn | cAt | cTt | 8 | 7 | 0.875 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446R | H1264R | nonsyn | cAt | cGt | 8 | 6 | 0.75 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446L | H1264L | nonsyn | cAT | cTG | 8 | 1 | 0.125 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446R | H1264R | nonsyn | CAT | AGA | 8 | 1 | 0.125 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446R | H1264R | nonsyn | cAT | cGA | 8 | 1 | 0.125 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446N | H1264N | nonsyn | Cat | Aat | 6 | 6 | 1 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446P | H1264P | nonsyn | cAt | cCt | 5 | 5 | 1 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446S | H1264S | nonsyn | CAt | AGt | 3 | 2 | 0.666667 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446S | H1264S | nonsyn | CAt | TCt | 3 | 1 | 0.333333 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446del1 | H1264del1 | del | caT | ca- | 2 | 2 | 1 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446C | H1264C | nonsyn | CAt | TGt | 1 | 1 | 1 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446K | H1264K | nonsyn | CaT | AaA | 1 | 1 | 1 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446del2 | H1264del2 | del | cAT | c-- | 1 | 1 | 1 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446D | H1264D | nonsyn | Cat | Gat | 1 | 1 | 1 | 4055-4057 |
ORF1ab/nsp3 | 446 | H446F | H1264F | nonsyn | CAt | TTt | 1 | 1 | 1 | 4055-4057 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2380 | 2380 | All | 0.000455 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1257 | 1257 | AY.4 | 0.001956 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 729 | 729 | All | 0.000139 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 463 | 463 | B.1.36.21 | 1 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 286 | 286 | B.1.1.7 | 0.000256 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 283 | 283 | AY.39.1 | 0.011211 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 165 | 165 | AY.103 | 0.001024 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 131 | 131 | B.1.1.7 | 0.000117 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 56 | 56 | AY.25 | 0.000337 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 30 | 30 | All | 0.000006 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 25 | 25 | B.1.617.2 | 0.000094 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 24 | 24 | B.1.177 | 0.000316 |
ORF1ab/nsp3 | 446 | H446Q | caT | caG | 14 | 22 | All | 0.000003 |
ORF1ab/nsp3 | 446 | H446Q | caT | caA | 8 | 22 | All | 0.000002 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp3 | 446 | H446Q | caT | caG | 11 | 12 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 446 | H446Q | caT | caA | 1 | 12 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 10 | 10 | A.21 | 0.027701 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp3 | 446 | H446L | cAt | cTt | 7 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 446 | H446R | cAt | cGt | 6 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 446 | H446R | cAT | cGA | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 446 | H446R | CAT | AGA | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 446 | H446L | cAT | cTG | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 7 | 7 | B.1.620 | 0.006623 |
ORF1ab/nsp3 | 446 | H446N | Cat | Aat | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 446 | H446P | cAt | cCt | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 4 | 4 | B.1.426 | 0.004036 |
ORF1ab/nsp3 | 446 | H446R | cAT | cGA | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 446 | H446R | cAt | cGt | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 446 | H446R | CAT | AGA | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 446 | H446S | CAt | AGt | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 446 | H446S | CAt | TCt | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 446 | H446P | cAt | cCt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | B.1.258.22 | 0.008 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 3 | 3 | B.1.636 | 0.020134 |
ORF1ab/nsp3 | 446 | H446del1 | caT | ca- | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 446 | H446Q | caT | caA | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 446 | H446N | Cat | Aat | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 446 | H446S | CAt | AGt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 446 | H446K | CaT | AaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 446 | H446Q | caT | caA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 446 | H446L | cAt | cTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 446 | H446K | CaT | AaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 446 | H446C | CAt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 446 | H446del2 | cAT | c-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 446 | H446D | Cat | Gat | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 446 | H446F | CAt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 446 | H446L | cAt | cTt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 446 | H446L | cAt | cTt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 446 | H446Q | caT | caA | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 446 | H446P | cAt | cCt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 446 | H446S | CAt | TCt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 446 | H446C | CAt | TGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 446 | H446L | cAt | cTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 446 | H446L | cAt | cTt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 446 | H446L | cAt | cTt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 446 | H446Q | caT | caG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 446 | H446L | cAT | cTG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 446 | H446L | cAt | cTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 446 | H446D | Cat | Gat | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 446 | H446del1 | caT | ca- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 446 | H446N | Cat | Aat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 446 | H446R | cAt | cGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 446 | H446P | cAt | cCt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 446 | H446Q | caT | caG | 1 | 1 | B.1.1.300 | 0.010753 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 446 | H446del1 | caT | ca- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 446 | H446N | Cat | Aat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 446 | H446N | Cat | Aat | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 446 | H446N | Cat | Aat | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 446 | H446R | cAt | cGt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 446 | H446Q | caT | caG | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 446 | H446R | cAt | cGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 446 | H446del2 | cAT | c-- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 446 | H446N | Cat | Aat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 446 | H446F | CAt | TTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 446 | H446R | cAt | cGt | 1 | 1 | B.1.268 | 0.010417 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp3 | 446 | H446S | CAt | AGt | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 446 | H446Q | caT | caA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 446 | H446Q | caT | caA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 446 | H446R | cAt | cGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 446 | H446Q | caT | caA | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 446 | H446Y | Cat | Tat | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 446 | H446H | caT | caC | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 446 | H446del | CAT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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