CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 446

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3446H446HH1264HsyncaTcaC2380238014055-4057
ORF1ab/nsp3446H446YH1264YnonsynCatTat72972914055-4057
ORF1ab/nsp3446H446delH1264deldelCAT---303014055-4057
ORF1ab/nsp3446H446QH1264QnonsyncaTcaG22140.6363644055-4057
ORF1ab/nsp3446H446QH1264QnonsyncaTcaA2280.3636364055-4057
ORF1ab/nsp3446H446LH1264LnonsyncAtcTt870.8754055-4057
ORF1ab/nsp3446H446RH1264RnonsyncAtcGt860.754055-4057
ORF1ab/nsp3446H446LH1264LnonsyncATcTG810.1254055-4057
ORF1ab/nsp3446H446RH1264RnonsynCATAGA810.1254055-4057
ORF1ab/nsp3446H446RH1264RnonsyncATcGA810.1254055-4057
ORF1ab/nsp3446H446NH1264NnonsynCatAat6614055-4057
ORF1ab/nsp3446H446PH1264PnonsyncAtcCt5514055-4057
ORF1ab/nsp3446H446SH1264SnonsynCAtAGt320.6666674055-4057
ORF1ab/nsp3446H446SH1264SnonsynCAtTCt310.3333334055-4057
ORF1ab/nsp3446H446del1H1264del1delcaTca-2214055-4057
ORF1ab/nsp3446H446CH1264CnonsynCAtTGt1114055-4057
ORF1ab/nsp3446H446KH1264KnonsynCaTAaA1114055-4057
ORF1ab/nsp3446H446del2H1264del2delcATc--1114055-4057
ORF1ab/nsp3446H446DH1264DnonsynCatGat1114055-4057
ORF1ab/nsp3446H446FH1264FnonsynCAtTTt1114055-4057

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3446H446HcaTcaC23802380All0.000455
ORF1ab/nsp3446H446HcaTcaC12571257AY.40.001956
ORF1ab/nsp3446H446YCatTat729729All0.000139
ORF1ab/nsp3446H446HcaTcaC463463B.1.36.211
ORF1ab/nsp3446H446YCatTat286286B.1.1.70.000256
ORF1ab/nsp3446H446YCatTat283283AY.39.10.011211
ORF1ab/nsp3446H446HcaTcaC165165AY.1030.001024
ORF1ab/nsp3446H446HcaTcaC131131B.1.1.70.000117
ORF1ab/nsp3446H446HcaTcaC5656AY.250.000337
ORF1ab/nsp3446H446delCAT---3030All0.000006
ORF1ab/nsp3446H446HcaTcaC2525B.1.617.20.000094
ORF1ab/nsp3446H446HcaTcaC2424B.1.1770.000316
ORF1ab/nsp3446H446QcaTcaG1422All0.000003
ORF1ab/nsp3446H446QcaTcaA822All0.000002
ORF1ab/nsp3446H446HcaTcaC2121B.1.5260.000494
ORF1ab/nsp3446H446HcaTcaC2020B.1.4270.00101
ORF1ab/nsp3446H446YCatTat1919AY.40.00003
ORF1ab/nsp3446H446HcaTcaC1616B.1.20.000141
ORF1ab/nsp3446H446QcaTcaG1112B.1.1.70.00001
ORF1ab/nsp3446H446QcaTcaA112B.1.1.70.000001
ORF1ab/nsp3446H446HcaTcaC1111AY.390.000272
ORF1ab/nsp3446H446YCatTat1111B.1.617.20.000041
ORF1ab/nsp3446H446HcaTcaC1010A.210.027701
ORF1ab/nsp3446H446HcaTcaC1010B.1.1.5190.000397
ORF1ab/nsp3446H446HcaTcaC99AY.1020.000239
ORF1ab/nsp3446H446HcaTcaC99AY.430.00004
ORF1ab/nsp3446H446delCAT---99B.1.1.70.000008
ORF1ab/nsp3446H446HcaTcaC99P.10.000142
ORF1ab/nsp3446H446LcAtcTt78All0.000001
ORF1ab/nsp3446H446RcAtcGt68All0.000001
ORF1ab/nsp3446H446RcATcGA18All0
ORF1ab/nsp3446H446RCATAGA18All0
ORF1ab/nsp3446H446LcATcTG18All0
ORF1ab/nsp3446H446YCatTat88AY.250.000048
ORF1ab/nsp3446H446YCatTat88B.1.6370.000585
ORF1ab/nsp3446H446HcaTcaC77AY.290.00011
ORF1ab/nsp3446H446HcaTcaC77AY.360.001037
ORF1ab/nsp3446H446HcaTcaC77B.10.000064
ORF1ab/nsp3446H446HcaTcaC77B.1.10.000127
ORF1ab/nsp3446H446YCatTat77B.1.6200.006623
ORF1ab/nsp3446H446NCatAat66All0.000001
ORF1ab/nsp3446H446YCatTat66AY.1030.000037
ORF1ab/nsp3446H446HcaTcaC66AY.3.10.000512
ORF1ab/nsp3446H446YCatTat66AY.4.20.00013
ORF1ab/nsp3446H446YCatTat66AY.440.000037
ORF1ab/nsp3446H446YCatTat66B.1.1770.000079
ORF1ab/nsp3446H446PcAtcCt55All0.000001
ORF1ab/nsp3446H446YCatTat55AY.290.000079
ORF1ab/nsp3446H446HcaTcaC55AY.420.000201
ORF1ab/nsp3446H446YCatTat55AY.60.000206
ORF1ab/nsp3446H446HcaTcaC55AY.98.10.000242
ORF1ab/nsp3446H446YCatTat55B.1.1.3180.001509
ORF1ab/nsp3446H446HcaTcaC55P.1.140.000239
ORF1ab/nsp3446H446HcaTcaC44AY.30.00004
ORF1ab/nsp3446H446YCatTat44AY.430.000018
ORF1ab/nsp3446H446YCatTat44B.1.20.000035
ORF1ab/nsp3446H446HcaTcaC44B.1.258.170.000416
ORF1ab/nsp3446H446HcaTcaC44B.1.4260.004036
ORF1ab/nsp3446H446RcATcGA130.055556
ORF1ab/nsp3446H446RcAtcGt130.055556
ORF1ab/nsp3446H446RCATAGA130.055556
ORF1ab/nsp3446H446SCAtAGt23All0
ORF1ab/nsp3446H446SCAtTCt13All0
ORF1ab/nsp3446H446HcaTcaC33AY.200.000117
ORF1ab/nsp3446H446YCatTat33AY.30.00003
ORF1ab/nsp3446H446HcaTcaC33AY.440.000018
ORF1ab/nsp3446H446HcaTcaC33AY.470.000093
ORF1ab/nsp3446H446HcaTcaC33B0.000383
ORF1ab/nsp3446H446delCAT---33B.10.000027
ORF1ab/nsp3446H446HcaTcaC33B.1.1.2220.000612
ORF1ab/nsp3446H446PcAtcCt33B.1.1.70.000003
ORF1ab/nsp3446H446HcaTcaC33B.1.258.220.008
ORF1ab/nsp3446H446HcaTcaC33B.1.351.20.000908
ORF1ab/nsp3446H446HcaTcaC33B.1.6360.020134
ORF1ab/nsp3446H446del1caTca-22All0
ORF1ab/nsp3446H446YCatTat22AY.1000.000092
ORF1ab/nsp3446H446HcaTcaC22AY.1050.001286
ORF1ab/nsp3446H446YCatTat22AY.1190.000071
ORF1ab/nsp3446H446HcaTcaC22AY.1200.000074
ORF1ab/nsp3446H446YCatTat22AY.120.10.000642
ORF1ab/nsp3446H446HcaTcaC22AY.140.000176
ORF1ab/nsp3446H446HcaTcaC22AY.260.000057
ORF1ab/nsp3446H446YCatTat22AY.390.000049
ORF1ab/nsp3446H446HcaTcaC22AY.7.20.001119
ORF1ab/nsp3446H446HcaTcaC22AY.920.000575
ORF1ab/nsp3446H446YCatTat22B.10.000018
ORF1ab/nsp3446H446YCatTat22B.1.1600.000062
ORF1ab/nsp3446H446YCatTat22B.1.177.120.000303
ORF1ab/nsp3446H446HcaTcaC22B.1.36.380.003284
ORF1ab/nsp3446H446YCatTat22B.1.4290.000047
ORF1ab/nsp3446H446HcaTcaC22B.1.4290.000047
ORF1ab/nsp3446H446YCatTat22B.1.5640.000852
ORF1ab/nsp3446H446HcaTcaC22B.1.5680.002222
ORF1ab/nsp3446H446YCatTat22B.1.5960.000174
ORF1ab/nsp3446H446HcaTcaC22D.20.00015
ORF1ab/nsp3446H446QcaTcaA22P.10.000032
ORF1ab/nsp3446H446NCatAat110.055556
ORF1ab/nsp3446H446SCAtAGt110.055556
ORF1ab/nsp3446H446KCaTAaA110.055556
ORF1ab/nsp3446H446QcaTcaA110.055556
ORF1ab/nsp3446H446LcAtcTt110.055556
ORF1ab/nsp3446H446YCatTat11A.10.000282
ORF1ab/nsp3446H446HcaTcaC11A.20.000662
ORF1ab/nsp3446H446KCaTAaA11All0
ORF1ab/nsp3446H446CCAtTGt11All0
ORF1ab/nsp3446H446del2cATc--11All0
ORF1ab/nsp3446H446DCatGat11All0
ORF1ab/nsp3446H446FCAtTTt11All0
ORF1ab/nsp3446H446HcaTcaC11AY.1000.000046
ORF1ab/nsp3446H446LcAtcTt11AY.1010.00049
ORF1ab/nsp3446H446LcAtcTt11AY.1030.000006
ORF1ab/nsp3446H446HcaTcaC11AY.1060.000335
ORF1ab/nsp3446H446YCatTat11AY.1130.000142
ORF1ab/nsp3446H446QcaTcaA11AY.116.10.000311
ORF1ab/nsp3446H446HcaTcaC11AY.1170.000085
ORF1ab/nsp3446H446HcaTcaC11AY.1180.000063
ORF1ab/nsp3446H446PcAtcCt11AY.120.000316
ORF1ab/nsp3446H446YCatTat11AY.120.000316
ORF1ab/nsp3446H446SCAtTCt11AY.120.000316
ORF1ab/nsp3446H446YCatTat11AY.1200.000037
ORF1ab/nsp3446H446delCAT---11AY.1200.000037
ORF1ab/nsp3446H446YCatTat11AY.120.2.10.000498
ORF1ab/nsp3446H446HcaTcaC11AY.160.00038
ORF1ab/nsp3446H446YCatTat11AY.200.000039
ORF1ab/nsp3446H446HcaTcaC11AY.230.00007
ORF1ab/nsp3446H446HcaTcaC11AY.23.10.000417
ORF1ab/nsp3446H446YCatTat11AY.260.000028
ORF1ab/nsp3446H446CCAtTGt11AY.30.00001
ORF1ab/nsp3446H446LcAtcTt11AY.340.000097
ORF1ab/nsp3446H446HcaTcaC11AY.39.10.00004
ORF1ab/nsp3446H446LcAtcTt11AY.40.000002
ORF1ab/nsp3446H446delCAT---11AY.40.000002
ORF1ab/nsp3446H446YCatTat11AY.4.2.10.000149
ORF1ab/nsp3446H446LcAtcTt11AY.430.000004
ORF1ab/nsp3446H446QcaTcaG11AY.430.000004
ORF1ab/nsp3446H446LcATcTG11AY.440.000006
ORF1ab/nsp3446H446delCAT---11AY.46.60.000072
ORF1ab/nsp3446H446HcaTcaC11AY.490.003195
ORF1ab/nsp3446H446HcaTcaC11AY.50.000021
ORF1ab/nsp3446H446HcaTcaC11AY.510.000909
ORF1ab/nsp3446H446HcaTcaC11AY.610.000105
ORF1ab/nsp3446H446YCatTat11AY.610.000105
ORF1ab/nsp3446H446HcaTcaC11AY.640.000595
ORF1ab/nsp3446H446delCAT---11AY.670.000464
ORF1ab/nsp3446H446LcAtcTt11AY.70.000196
ORF1ab/nsp3446H446HcaTcaC11AY.7.10.000113
ORF1ab/nsp3446H446HcaTcaC11AY.730.000665
ORF1ab/nsp3446H446HcaTcaC11AY.890.004902
ORF1ab/nsp3446H446HcaTcaC11AY.9.20.000037
ORF1ab/nsp3446H446YCatTat11AY.980.000079
ORF1ab/nsp3446H446HcaTcaC11AY.980.000079
ORF1ab/nsp3446H446DCatGat11AY.98.10.000048
ORF1ab/nsp3446H446YCatTat11AY.98.10.000048
ORF1ab/nsp3446H446YCatTat11AY.99.20.000092
ORF1ab/nsp3446H446del1caTca-11B0.000128
ORF1ab/nsp3446H446YCatTat11B0.000128
ORF1ab/nsp3446H446NCatAat11B.10.000009
ORF1ab/nsp3446H446RcAtcGt11B.10.000009
ORF1ab/nsp3446H446delCAT---11B.1.10.000018
ORF1ab/nsp3446H446YCatTat11B.1.1.1570.000913
ORF1ab/nsp3446H446YCatTat11B.1.1.2160.00089
ORF1ab/nsp3446H446YCatTat11B.1.1.2220.000204
ORF1ab/nsp3446H446YCatTat11B.1.1.2650.003155
ORF1ab/nsp3446H446PcAtcCt11B.1.1.280.000311
ORF1ab/nsp3446H446HcaTcaC11B.1.1.280.000311
ORF1ab/nsp3446H446HcaTcaC11B.1.1.2840.000107
ORF1ab/nsp3446H446YCatTat11B.1.1.2840.000107
ORF1ab/nsp3446H446QcaTcaG11B.1.1.3000.010753
ORF1ab/nsp3446H446YCatTat11B.1.1.3040.002809
ORF1ab/nsp3446H446delCAT---11B.1.1.330.000421
ORF1ab/nsp3446H446HcaTcaC11B.1.1.370.000193
ORF1ab/nsp3446H446delCAT---11B.1.1.370.000193
ORF1ab/nsp3446H446HcaTcaC11B.1.1.4160.000905
ORF1ab/nsp3446H446delCAT---11B.1.1.5190.00004
ORF1ab/nsp3446H446del1caTca-11B.1.1.70.000001
ORF1ab/nsp3446H446NCatAat11B.1.1.70.000001
ORF1ab/nsp3446H446HcaTcaC11B.1.1390.000733
ORF1ab/nsp3446H446HcaTcaC11B.1.1600.000031
ORF1ab/nsp3446H446YCatTat11B.1.160.140.002119
ORF1ab/nsp3446H446HcaTcaC11B.1.177.120.000152
ORF1ab/nsp3446H446YCatTat11B.1.177.160.000664
ORF1ab/nsp3446H446delCAT---11B.1.177.160.000664
ORF1ab/nsp3446H446delCAT---11B.1.177.40.000211
ORF1ab/nsp3446H446YCatTat11B.1.177.40.000211
ORF1ab/nsp3446H446YCatTat11B.1.177.410.0025
ORF1ab/nsp3446H446HcaTcaC11B.1.177.420.000894
ORF1ab/nsp3446H446NCatAat11B.1.177.540.000606
ORF1ab/nsp3446H446NCatAat11B.1.177.570.000281
ORF1ab/nsp3446H446HcaTcaC11B.1.177.620.001192
ORF1ab/nsp3446H446YCatTat11B.1.177.70.000165
ORF1ab/nsp3446H446RcAtcGt11B.1.177.730.000566
ORF1ab/nsp3446H446QcaTcaG11B.1.177.820.000477
ORF1ab/nsp3446H446RcAtcGt11B.1.20.000009
ORF1ab/nsp3446H446del2cATc--11B.1.20.000009
ORF1ab/nsp3446H446NCatAat11B.1.20.000009
ORF1ab/nsp3446H446YCatTat11B.1.2060.000816
ORF1ab/nsp3446H446HcaTcaC11B.1.2060.000816
ORF1ab/nsp3446H446HcaTcaC11B.1.220.001318
ORF1ab/nsp3446H446FCAtTTt11B.1.2210.000071
ORF1ab/nsp3446H446YCatTat11B.1.2340.000132
ORF1ab/nsp3446H446HcaTcaC11B.1.2430.00007
ORF1ab/nsp3446H446YCatTat11B.1.2430.00007
ORF1ab/nsp3446H446RcAtcGt11B.1.2680.010417
ORF1ab/nsp3446H446HcaTcaC11B.1.360.000146
ORF1ab/nsp3446H446delCAT---11B.1.360.000146
ORF1ab/nsp3446H446YCatTat11B.1.36.290.000517
ORF1ab/nsp3446H446HcaTcaC11B.1.36.370.002778
ORF1ab/nsp3446H446SCAtAGt11B.1.3770.004566
ORF1ab/nsp3446H446YCatTat11B.1.4040.001302
ORF1ab/nsp3446H446HcaTcaC11B.1.4090.000781
ORF1ab/nsp3446H446delCAT---11B.1.4290.000024
ORF1ab/nsp3446H446QcaTcaA11B.1.4290.000024
ORF1ab/nsp3446H446YCatTat11B.1.5250.000113
ORF1ab/nsp3446H446QcaTcaA11B.1.5260.000024
ORF1ab/nsp3446H446YCatTat11B.1.5260.000024
ORF1ab/nsp3446H446YCatTat11B.1.5510.00129
ORF1ab/nsp3446H446HcaTcaC11B.1.5770.000687
ORF1ab/nsp3446H446HcaTcaC11B.1.617.10.000129
ORF1ab/nsp3446H446delCAT---11B.1.617.20.000004
ORF1ab/nsp3446H446RcAtcGt11B.1.617.20.000004
ORF1ab/nsp3446H446delCAT---11B.1.6210.000089
ORF1ab/nsp3446H446HcaTcaC11B.1.6280.000352
ORF1ab/nsp3446H446HcaTcaC11B.400.000364
ORF1ab/nsp3446H446delCAT---11B.570.015152
ORF1ab/nsp3446H446YCatTat11C.370.000116
ORF1ab/nsp3446H446YCatTat11D.20.000075
ORF1ab/nsp3446H446YCatTat11N.50.001767
ORF1ab/nsp3446H446delCAT---11P.10.000016
ORF1ab/nsp3446H446QcaTcaA11P.1.10.000318
ORF1ab/nsp3446H446YCatTat11P.1.140.000048
ORF1ab/nsp3446H446YCatTat11Q.20.000613
ORF1ab/nsp3446H446HcaTcaC11R.10.00009
ORF1ab/nsp3446H446delCAT---11R.10.00009
ORF1ab/nsp3446H446delCAT---11U.30.003861