CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 441 | I441V | I1259V | nonsyn | Att | Gtt | 3120 | 3119 | 0.99968 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441V | I1259V | nonsyn | AtT | GtC | 3120 | 1 | 0.000320513 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441S | I1259S | nonsyn | aTt | aGt | 457 | 438 | 0.958425 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441S | I1259S | nonsyn | ATt | TCt | 457 | 14 | 0.0306346 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441S | I1259S | nonsyn | aTT | aGC | 457 | 5 | 0.0109409 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441L | I1259L | nonsyn | Att | Ctt | 415 | 415 | 1 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441T | I1259T | nonsyn | aTt | aCt | 219 | 216 | 0.986301 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441T | I1259T | nonsyn | aTT | aCC | 219 | 3 | 0.0136986 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441I | I1259I | syn | atT | atC | 179 | 171 | 0.955307 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441I | I1259I | syn | atT | atA | 179 | 8 | 0.0446927 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441del | I1259del | del | ATT | --- | 45 | 45 | 1 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441N | I1259N | nonsyn | aTt | aAt | 6 | 6 | 1 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441F | I1259F | nonsyn | Att | Ttt | 6 | 6 | 1 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441del1 | I1259del1 | del | aTt | a-t | 5 | 2 | 0.4 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441del1 | I1259del1 | del | Att | -tt | 5 | 1 | 0.2 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441del1 | I1259del1 | del | ATT | -NN | 5 | 1 | 0.2 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441del1 | I1259del1 | del | AtT | Gt- | 5 | 1 | 0.2 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441M | I1259M | nonsyn | atT | atG | 4 | 4 | 1 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441K | I1259K | nonsyn | aTT | aAG | 2 | 2 | 1 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441P | I1259P | nonsyn | ATt | CCt | 2 | 1 | 0.5 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441G | I1259G | nonsyn | ATT | GGC | 2 | 1 | 0.5 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441G | I1259G | nonsyn | ATt | GGt | 2 | 1 | 0.5 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441P | I1259P | nonsyn | ATT | CCG | 2 | 1 | 0.5 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441A | I1259A | nonsyn | ATt | GCt | 2 | 1 | 0.5 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441A | I1259A | nonsyn | ATT | GCG | 2 | 1 | 0.5 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441E | I1259E | nonsyn | ATT | GAG | 1 | 1 | 1 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441H | I1259H | nonsyn | ATt | CAt | 1 | 1 | 1 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441Q | I1259Q | nonsyn | ATT | CAG | 1 | 1 | 1 | 4040-4042 |
ORF1ab/nsp3 | 441 | I441D | I1259D | nonsyn | ATt | GAt | 1 | 1 | 1 | 4040-4042 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 3119 | 3120 | All | 0.000597 |
ORF1ab/nsp3 | 441 | I441V | AtT | GtC | 1 | 3120 | All | 0 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1845 | 1845 | B.1.221 | 0.131056 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 488 | 488 | P.1 | 0.007688 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 438 | 457 | All | 0.000084 |
ORF1ab/nsp3 | 441 | I441S | ATt | TCt | 14 | 457 | All | 0.000003 |
ORF1ab/nsp3 | 441 | I441S | aTT | aGC | 5 | 457 | All | 0.000001 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 415 | 415 | All | 0.000079 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 396 | 396 | AY.4 | 0.000616 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 385 | 385 | B.1.1.7 | 0.000345 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 216 | 219 | All | 0.000041 |
ORF1ab/nsp3 | 441 | I441T | aTT | aCC | 3 | 219 | All | 0.000001 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 207 | 207 | P.1.8 | 0.990431 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 200 | 200 | P.1.9 | 0.961538 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 171 | 179 | All | 0.000033 |
ORF1ab/nsp3 | 441 | I441I | atT | atA | 8 | 179 | All | 0.000002 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 116 | 116 | B.1.620 | 0.109745 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 103 | 103 | B.1.1.7 | 0.000092 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 67 | 67 | P.1 | 0.001056 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 45 | 45 | All | 0.000009 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 41 | 41 | AY.39.1 | 0.001624 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 40 | 40 | B.1.36 | 0.005836 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 27 | 28 | B.1.1.7 | 0.000024 |
ORF1ab/nsp3 | 441 | I441T | aTT | aCC | 1 | 28 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 27 | 27 | P.1.14 | 0.001291 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 26 | 26 | AY.99.2 | 0.002396 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 23 | 23 | B.1.617.2 | 0.000087 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 18 | 20 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 441 | I441I | atT | atA | 2 | 20 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 16 | 16 | AY.103 | 0.000099 |
ORF1ab/nsp3 | 441 | I441S | ATt | TCt | 14 | 14 | AY.29 | 0.000221 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 7 | 7 | B.1.177.43 | 0.01034 |
ORF1ab/nsp3 | 441 | I441N | aTt | aAt | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 441 | I441F | Att | Ttt | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 6 | 6 | AY.74 | 0.000694 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 6 | 6 | B.1.236 | 0.01232 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 6 | 6 | B.1.438.1 | 0.000644 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 5 | 6 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 441 | I441S | aTT | aGC | 1 | 6 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp3 | 441 | I441del1 | aTt | a-t | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 441 | I441del1 | ATT | -NN | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 441 | I441del1 | AtT | Gt- | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 441 | I441del1 | Att | -tt | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 5 | 5 | B.1.36.18 | 0.002101 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 441 | I441T | aTT | aCC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 441 | I441M | atT | atG | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp3 | 441 | I441I | atT | atA | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 2 | 4 | B.1 | 0.000018 |
ORF1ab/nsp3 | 441 | I441S | aTT | aGC | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 441 | I441I | atT | atA | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 441 | I441S | aTT | aGC | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 441 | I441N | aTt | aAt | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 4 | 4 | B.1.524 | 0.005626 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 441 | I441V | AtT | GtC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 441 | I441S | aTT | aGC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 441 | I441G | ATT | GGC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 441 | I441G | ATt | GGt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 441 | I441K | aTT | aAG | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 441 | I441G | ATt | GGt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 441 | I441A | ATt | GCt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 441 | I441P | ATT | CCG | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 441 | I441G | ATT | GGC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 441 | I441P | ATt | CCt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 441 | I441A | ATT | GCG | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 441 | I441M | atT | atG | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 441 | I441A | ATt | GCt | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 441 | I441P | ATt | CCt | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 441 | I441A | ATT | GCG | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 441 | I441P | ATT | CCG | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 441 | I441I | atT | atA | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 2 | 2 | B.1.9 | 0.012346 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 441 | I441Q | ATT | CAG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 441 | I441H | ATt | CAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 441 | I441D | ATt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 441 | I441E | ATT | GAG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 441 | I441M | atT | atG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 441 | I441F | Att | Ttt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 441 | I441K | aTT | aAG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 441 | I441F | Att | Ttt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 441 | I441N | aTt | aAt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 441 | I441N | aTt | aAt | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 441 | I441Q | ATT | CAG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 441 | I441E | ATT | GAG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 441 | I441H | ATt | CAt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 441 | I441D | ATt | GAt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 441 | I441F | Att | Ttt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 441 | I441F | Att | Ttt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 441 | I441M | atT | atG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 441 | I441F | Att | Ttt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 441 | I441I | atT | atA | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 441 | I441del1 | Att | -tt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 441 | I441del1 | aTt | a-t | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 441 | I441I | atT | atA | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 441 | I441del1 | AtT | Gt- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 441 | I441L | Att | Ctt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 441 | I441del1 | aTt | a-t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 441 | I441K | aTT | aAG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 441 | I441del1 | ATT | -NN | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 441 | I441S | aTT | aGC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 1 | 1 | B.4.7 | 0.010101 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp3 | 441 | I441I | atT | atC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 441 | I441S | aTt | aGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 441 | I441T | aTt | aCt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 441 | I441V | Att | Gtt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 441 | I441F | Att | Ttt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 441 | I441del | ATT | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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