CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 441

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3441I441VI1259VnonsynAttGtt312031190.999684040-4042
ORF1ab/nsp3441I441VI1259VnonsynAtTGtC312010.0003205134040-4042
ORF1ab/nsp3441I441SI1259SnonsynaTtaGt4574380.9584254040-4042
ORF1ab/nsp3441I441SI1259SnonsynATtTCt457140.03063464040-4042
ORF1ab/nsp3441I441SI1259SnonsynaTTaGC45750.01094094040-4042
ORF1ab/nsp3441I441LI1259LnonsynAttCtt41541514040-4042
ORF1ab/nsp3441I441TI1259TnonsynaTtaCt2192160.9863014040-4042
ORF1ab/nsp3441I441TI1259TnonsynaTTaCC21930.01369864040-4042
ORF1ab/nsp3441I441II1259IsynatTatC1791710.9553074040-4042
ORF1ab/nsp3441I441II1259IsynatTatA17980.04469274040-4042
ORF1ab/nsp3441I441delI1259deldelATT---454514040-4042
ORF1ab/nsp3441I441NI1259NnonsynaTtaAt6614040-4042
ORF1ab/nsp3441I441FI1259FnonsynAttTtt6614040-4042
ORF1ab/nsp3441I441del1I1259del1delaTta-t520.44040-4042
ORF1ab/nsp3441I441del1I1259del1delAtt-tt510.24040-4042
ORF1ab/nsp3441I441del1I1259del1delATT-NN510.24040-4042
ORF1ab/nsp3441I441del1I1259del1delAtTGt-510.24040-4042
ORF1ab/nsp3441I441MI1259MnonsynatTatG4414040-4042
ORF1ab/nsp3441I441KI1259KnonsynaTTaAG2214040-4042
ORF1ab/nsp3441I441PI1259PnonsynATtCCt210.54040-4042
ORF1ab/nsp3441I441GI1259GnonsynATTGGC210.54040-4042
ORF1ab/nsp3441I441GI1259GnonsynATtGGt210.54040-4042
ORF1ab/nsp3441I441PI1259PnonsynATTCCG210.54040-4042
ORF1ab/nsp3441I441AI1259AnonsynATtGCt210.54040-4042
ORF1ab/nsp3441I441AI1259AnonsynATTGCG210.54040-4042
ORF1ab/nsp3441I441EI1259EnonsynATTGAG1114040-4042
ORF1ab/nsp3441I441HI1259HnonsynATtCAt1114040-4042
ORF1ab/nsp3441I441QI1259QnonsynATTCAG1114040-4042
ORF1ab/nsp3441I441DI1259DnonsynATtGAt1114040-4042

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3441I441VAttGtt31193120All0.000597
ORF1ab/nsp3441I441VAtTGtC13120All0
ORF1ab/nsp3441I441VAttGtt18451845B.1.2210.131056
ORF1ab/nsp3441I441VAttGtt488488P.10.007688
ORF1ab/nsp3441I441SaTtaGt438457All0.000084
ORF1ab/nsp3441I441SATtTCt14457All0.000003
ORF1ab/nsp3441I441SaTTaGC5457All0.000001
ORF1ab/nsp3441I441LAttCtt415415All0.000079
ORF1ab/nsp3441I441SaTtaGt396396AY.40.000616
ORF1ab/nsp3441I441LAttCtt385385B.1.1.70.000345
ORF1ab/nsp3441I441TaTtaCt216219All0.000041
ORF1ab/nsp3441I441TaTTaCC3219All0.000001
ORF1ab/nsp3441I441VAttGtt207207P.1.80.990431
ORF1ab/nsp3441I441VAttGtt200200P.1.90.961538
ORF1ab/nsp3441I441IatTatC171179All0.000033
ORF1ab/nsp3441I441IatTatA8179All0.000002
ORF1ab/nsp3441I441IatTatC116116B.1.6200.109745
ORF1ab/nsp3441I441VAttGtt103103B.1.1.70.000092
ORF1ab/nsp3441I441TaTtaCt6767P.10.001056
ORF1ab/nsp3441I441delATT---4545All0.000009
ORF1ab/nsp3441I441VAttGtt4141AY.39.10.001624
ORF1ab/nsp3441I441VAttGtt4040B.1.360.005836
ORF1ab/nsp3441I441TaTtaCt2728B.1.1.70.000024
ORF1ab/nsp3441I441TaTTaCC128B.1.1.70.000001
ORF1ab/nsp3441I441TaTtaCt2727P.1.140.001291
ORF1ab/nsp3441I441TaTtaCt2626AY.99.20.002396
ORF1ab/nsp3441I441VAttGtt2323B.1.617.20.000087
ORF1ab/nsp3441I441IatTatC1820B.1.1.70.000016
ORF1ab/nsp3441I441IatTatA220B.1.1.70.000002
ORF1ab/nsp3441I441VAttGtt1717AY.40.000026
ORF1ab/nsp3441I441VAttGtt1616AY.1030.000099
ORF1ab/nsp3441I441SATtTCt1414AY.290.000221
ORF1ab/nsp3441I441delATT---1414B.1.1.70.000013
ORF1ab/nsp3441I441VAttGtt1414B.1.20.000123
ORF1ab/nsp3441I441IatTatC1313B.1.617.20.000049
ORF1ab/nsp3441I441VAttGtt99AY.250.000054
ORF1ab/nsp3441I441VAttGtt99B.1.1600.000281
ORF1ab/nsp3441I441TaTtaCt99B.1.20.000079
ORF1ab/nsp3441I441VAttGtt88AY.440.000049
ORF1ab/nsp3441I441LAttCtt88B.1.20.00007
ORF1ab/nsp3441I441VAttGtt77B.1.177.430.01034
ORF1ab/nsp3441I441NaTtaAt66All0.000001
ORF1ab/nsp3441I441FAttTtt66All0.000001
ORF1ab/nsp3441I441VAttGtt66AY.200.000233
ORF1ab/nsp3441I441LAttCtt66AY.430.000027
ORF1ab/nsp3441I441SaTtaGt66AY.740.000694
ORF1ab/nsp3441I441TaTtaCt66B.1.2360.01232
ORF1ab/nsp3441I441TaTtaCt66B.1.438.10.000644
ORF1ab/nsp3441I441SaTtaGt56B.1.617.20.000019
ORF1ab/nsp3441I441SaTTaGC16B.1.617.20.000004
ORF1ab/nsp3441I441VAttGtt66C.36.30.003403
ORF1ab/nsp3441I441del1aTta-t25All0
ORF1ab/nsp3441I441del1ATT-NN15All0
ORF1ab/nsp3441I441del1AtTGt-15All0
ORF1ab/nsp3441I441del1Att-tt15All0
ORF1ab/nsp3441I441TaTtaCt55AY.39.10.000198
ORF1ab/nsp3441I441SaTtaGt55AY.60.000206
ORF1ab/nsp3441I441VAttGtt55B.10.000046
ORF1ab/nsp3441I441LAttCtt55B.1.1600.000156
ORF1ab/nsp3441I441SaTtaGt55B.1.258.170.00052
ORF1ab/nsp3441I441VAttGtt55B.1.36.180.002101
ORF1ab/nsp3441I441TaTtaCt55C.370.00058
ORF1ab/nsp3441I441TaTTaCC240.111111
ORF1ab/nsp3441I441TaTtaCt240.111111
ORF1ab/nsp3441I441MatTatG44All0.000001
ORF1ab/nsp3441I441TaTtaCt44AY.1030.000025
ORF1ab/nsp3441I441VAttGtt44AY.290.000063
ORF1ab/nsp3441I441VAttGtt44AY.390.000099
ORF1ab/nsp3441I441TaTtaCt44AY.4.2.10.000596
ORF1ab/nsp3441I441VAttGtt44AY.4.50.00043
ORF1ab/nsp3441I441SaTtaGt34B.10.000027
ORF1ab/nsp3441I441IatTatA24B.10.000018
ORF1ab/nsp3441I441IatTatC24B.10.000018
ORF1ab/nsp3441I441SaTTaGC14B.10.000009
ORF1ab/nsp3441I441IatTatC34B.1.10.000054
ORF1ab/nsp3441I441IatTatA14B.1.10.000018
ORF1ab/nsp3441I441SaTtaGt34B.1.1.70.000003
ORF1ab/nsp3441I441SaTTaGC14B.1.1.70.000001
ORF1ab/nsp3441I441VAttGtt44B.1.1770.000053
ORF1ab/nsp3441I441NaTtaAt44B.1.4270.000202
ORF1ab/nsp3441I441VAttGtt44B.1.5240.005626
ORF1ab/nsp3441I441IatTatC330.166667
ORF1ab/nsp3441I441VAttGtt33AY.1020.00008
ORF1ab/nsp3441I441TaTtaCt33AY.390.000074
ORF1ab/nsp3441I441IatTatC33AY.40.000005
ORF1ab/nsp3441I441delATT---33B.10.000027
ORF1ab/nsp3441I441VAttGtt33B.1.177.120.000455
ORF1ab/nsp3441I441TaTtaCt33B.1.617.20.000011
ORF1ab/nsp3441I441VAttGtt120.055556
ORF1ab/nsp3441I441VAtTGtC120.055556
ORF1ab/nsp3441I441SaTtaGt120.055556
ORF1ab/nsp3441I441SaTTaGC120.055556
ORF1ab/nsp3441I441GATTGGC120.055556
ORF1ab/nsp3441I441GATtGGt120.055556
ORF1ab/nsp3441I441KaTTaAG22All0
ORF1ab/nsp3441I441GATtGGt12All0
ORF1ab/nsp3441I441AATtGCt12All0
ORF1ab/nsp3441I441PATTCCG12All0
ORF1ab/nsp3441I441GATTGGC12All0
ORF1ab/nsp3441I441PATtCCt12All0
ORF1ab/nsp3441I441AATTGCG12All0
ORF1ab/nsp3441I441VAttGtt22AY.1000.000092
ORF1ab/nsp3441I441TaTtaCt22AY.30.00002
ORF1ab/nsp3441I441VAttGtt22AY.330.000134
ORF1ab/nsp3441I441LAttCtt22AY.40.000003
ORF1ab/nsp3441I441delATT---22AY.40.000003
ORF1ab/nsp3441I441TaTtaCt22AY.420.00008
ORF1ab/nsp3441I441IatTatC22AY.440.000012
ORF1ab/nsp3441I441VAttGtt22AY.470.000062
ORF1ab/nsp3441I441MatTatG22B.10.000018
ORF1ab/nsp3441I441VAttGtt22B.1.10.000036
ORF1ab/nsp3441I441SaTtaGt22B.1.1.3060.000877
ORF1ab/nsp3441I441AATtGCt12B.1.1.330.000421
ORF1ab/nsp3441I441PATtCCt12B.1.1.330.000421
ORF1ab/nsp3441I441AATTGCG12B.1.1.330.000421
ORF1ab/nsp3441I441PATTCCG12B.1.1.330.000421
ORF1ab/nsp3441I441delATT---22B.1.177.40.000422
ORF1ab/nsp3441I441VAttGtt22B.1.177.60.001953
ORF1ab/nsp3441I441VAttGtt22B.1.177.70.00033
ORF1ab/nsp3441I441IatTatC12B.1.20.000009
ORF1ab/nsp3441I441IatTatA12B.1.20.000009
ORF1ab/nsp3441I441VAttGtt22B.1.3510.000059
ORF1ab/nsp3441I441TaTtaCt22B.1.4270.000101
ORF1ab/nsp3441I441VAttGtt22B.1.90.012346
ORF1ab/nsp3441I441delATT---22P.10.000032
ORF1ab/nsp3441I441delATT---22P.1.120.000968
ORF1ab/nsp3441I441VAttGtt22P.1.120.000968
ORF1ab/nsp3441I441VAttGtt22P.1.130.001797
ORF1ab/nsp3441I441VAttGtt11AD.20.000219
ORF1ab/nsp3441I441QATTCAG11All0
ORF1ab/nsp3441I441HATtCAt11All0
ORF1ab/nsp3441I441DATtGAt11All0
ORF1ab/nsp3441I441EATTGAG11All0
ORF1ab/nsp3441I441VAttGtt11AU.20.002421
ORF1ab/nsp3441I441TaTtaCt11AY.1000.000046
ORF1ab/nsp3441I441MatTatG11AY.1000.000046
ORF1ab/nsp3441I441IatTatC11AY.1030.000006
ORF1ab/nsp3441I441TaTtaCt11AY.1130.000142
ORF1ab/nsp3441I441VAttGtt11AY.1190.000035
ORF1ab/nsp3441I441delATT---11AY.1200.000037
ORF1ab/nsp3441I441IatTatC11AY.16.10.00047
ORF1ab/nsp3441I441SaTtaGt11AY.230.00007
ORF1ab/nsp3441I441TaTtaCt11AY.230.00007
ORF1ab/nsp3441I441TaTtaCt11AY.23.10.000417
ORF1ab/nsp3441I441SaTtaGt11AY.250.000006
ORF1ab/nsp3441I441SaTtaGt11AY.30.00001
ORF1ab/nsp3441I441FAttTtt11AY.30.00001
ORF1ab/nsp3441I441LAttCtt11AY.30.00001
ORF1ab/nsp3441I441LAttCtt11AY.330.000067
ORF1ab/nsp3441I441VAttGtt11AY.34.10.00051
ORF1ab/nsp3441I441LAttCtt11AY.360.000148
ORF1ab/nsp3441I441KaTTaAG11AY.390.000025
ORF1ab/nsp3441I441LAttCtt11AY.39.10.00004
ORF1ab/nsp3441I441VAttGtt11AY.420.00004
ORF1ab/nsp3441I441VAttGtt11AY.430.000004
ORF1ab/nsp3441I441delATT---11AY.430.000004
ORF1ab/nsp3441I441FAttTtt11AY.440.000006
ORF1ab/nsp3441I441SaTtaGt11AY.440.000006
ORF1ab/nsp3441I441VAttGtt11AY.46.60.000072
ORF1ab/nsp3441I441SaTtaGt11AY.50.000021
ORF1ab/nsp3441I441TaTtaCt11AY.50.000021
ORF1ab/nsp3441I441VAttGtt11AY.50.000021
ORF1ab/nsp3441I441VAttGtt11AY.580.000907
ORF1ab/nsp3441I441NaTtaAt11AY.590.00053
ORF1ab/nsp3441I441TaTtaCt11AY.590.00053
ORF1ab/nsp3441I441IatTatC11AY.610.000105
ORF1ab/nsp3441I441delATT---11AY.670.000464
ORF1ab/nsp3441I441TaTtaCt11AY.680.000274
ORF1ab/nsp3441I441IatTatC11AY.980.000079
ORF1ab/nsp3441I441LAttCtt11AY.98.10.000048
ORF1ab/nsp3441I441VAttGtt11B0.000128
ORF1ab/nsp3441I441SaTtaGt11B0.000128
ORF1ab/nsp3441I441TaTtaCt11B.10.000009
ORF1ab/nsp3441I441SaTtaGt11B.1.10.000018
ORF1ab/nsp3441I441delATT---11B.1.10.000018
ORF1ab/nsp3441I441delATT---11B.1.1.10.000327
ORF1ab/nsp3441I441NaTtaAt11B.1.1.1960.005714
ORF1ab/nsp3441I441VAttGtt11B.1.1.2220.000204
ORF1ab/nsp3441I441TaTtaCt11B.1.1.280.000311
ORF1ab/nsp3441I441TaTtaCt11B.1.1.3060.000438
ORF1ab/nsp3441I441VAttGtt11B.1.1.3060.000438
ORF1ab/nsp3441I441delATT---11B.1.1.330.000421
ORF1ab/nsp3441I441TaTtaCt11B.1.1.330.000421
ORF1ab/nsp3441I441QATTCAG11B.1.1.330.000421
ORF1ab/nsp3441I441EATTGAG11B.1.1.330.000421
ORF1ab/nsp3441I441HATtCAt11B.1.1.330.000421
ORF1ab/nsp3441I441DATtGAt11B.1.1.330.000421
ORF1ab/nsp3441I441delATT---11B.1.1.370.000193
ORF1ab/nsp3441I441TaTtaCt11B.1.1.3720.000689
ORF1ab/nsp3441I441delATT---11B.1.1.390.00051
ORF1ab/nsp3441I441FAttTtt11B.1.1.500.000679
ORF1ab/nsp3441I441delATT---11B.1.1.5190.00004
ORF1ab/nsp3441I441LAttCtt11B.1.1.630.000386
ORF1ab/nsp3441I441FAttTtt11B.1.1.70.000001
ORF1ab/nsp3441I441MatTatG11B.1.1.70.000001
ORF1ab/nsp3441I441FAttTtt11B.1.1600.000031
ORF1ab/nsp3441I441IatTatA11B.1.160.70.002079
ORF1ab/nsp3441I441IatTatC11B.1.1770.000013
ORF1ab/nsp3441I441delATT---11B.1.1770.000013
ORF1ab/nsp3441I441delATT---11B.1.177.160.000664
ORF1ab/nsp3441I441del1Att-tt11B.1.177.210.000076
ORF1ab/nsp3441I441LAttCtt11B.1.177.730.000566
ORF1ab/nsp3441I441VAttGtt11B.1.177.770.000726
ORF1ab/nsp3441I441IatTatC11B.1.220.001318
ORF1ab/nsp3441I441LAttCtt11B.1.2210.000071
ORF1ab/nsp3441I441SaTtaGt11B.1.2210.000071
ORF1ab/nsp3441I441VAttGtt11B.1.2580.000067
ORF1ab/nsp3441I441TaTtaCt11B.1.258.170.000104
ORF1ab/nsp3441I441delATT---11B.1.360.000146
ORF1ab/nsp3441I441VAttGtt11B.1.36.220.001208
ORF1ab/nsp3441I441del1aTta-t11B.1.36.290.000517
ORF1ab/nsp3441I441VAttGtt11B.1.36.80.001
ORF1ab/nsp3441I441IatTatC11B.1.4000.000429
ORF1ab/nsp3441I441SaTtaGt11B.1.4280.00102
ORF1ab/nsp3441I441delATT---11B.1.4290.000024
ORF1ab/nsp3441I441TaTtaCt11B.1.4290.000024
ORF1ab/nsp3441I441SaTtaGt11B.1.4520.013699
ORF1ab/nsp3441I441VAttGtt11B.1.4560.003268
ORF1ab/nsp3441I441IatTatA11B.1.5240.001406
ORF1ab/nsp3441I441VAttGtt11B.1.5250.000113
ORF1ab/nsp3441I441VAttGtt11B.1.5260.000024
ORF1ab/nsp3441I441delATT---11B.1.5260.000024
ORF1ab/nsp3441I441delATT---11B.1.5960.000087
ORF1ab/nsp3441I441del1AtTGt-11B.1.5960.000087
ORF1ab/nsp3441I441VAttGtt11B.1.5970.00463
ORF1ab/nsp3441I441LAttCtt11B.1.6090.000479
ORF1ab/nsp3441I441TaTtaCt11B.1.617.10.000129
ORF1ab/nsp3441I441del1aTta-t11B.1.617.20.000004
ORF1ab/nsp3441I441KaTTaAG11B.1.617.20.000004
ORF1ab/nsp3441I441del1ATT-NN11B.1.6210.000089
ORF1ab/nsp3441I441SaTTaGC11B.1.6210.000089
ORF1ab/nsp3441I441delATT---11B.1.6210.000089
ORF1ab/nsp3441I441IatTatC11B.4.70.010101
ORF1ab/nsp3441I441delATT---11B.570.015152
ORF1ab/nsp3441I441IatTatC11C.270.018519
ORF1ab/nsp3441I441IatTatC11C.370.000116
ORF1ab/nsp3441I441SaTtaGt11D.20.000075
ORF1ab/nsp3441I441SaTtaGt11P.10.000016
ORF1ab/nsp3441I441VAttGtt11P.1.10.000318
ORF1ab/nsp3441I441TaTtaCt11P.20.000187
ORF1ab/nsp3441I441VAttGtt11P.70.004367
ORF1ab/nsp3441I441delATT---11Q.10.000126
ORF1ab/nsp3441I441VAttGtt11Q.80.000165
ORF1ab/nsp3441I441FAttTtt11Q.80.000165
ORF1ab/nsp3441I441delATT---11R.10.00009
ORF1ab/nsp3441I441delATT---11U.30.003861