CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 431

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3431L431LL1249LsynctCctT765276030.9935964010-4012
ORF1ab/nsp3431L431LL1249LsynctCctA7652440.005750134010-4012
ORF1ab/nsp3431L431LL1249LsynctCctG765230.0003920544010-4012
ORF1ab/nsp3431L431LL1249LsynCtCTtG765210.0001306854010-4012
ORF1ab/nsp3431L431LL1249LsynCtCTtA765210.0001306854010-4012
ORF1ab/nsp3431L431FL1249FnonsynCtcTtc159015890.9993714010-4012
ORF1ab/nsp3431L431FL1249FnonsynCtCTtT159010.0006289314010-4012
ORF1ab/nsp3431L431RL1249RnonsyncTccGc16316314010-4012
ORF1ab/nsp3431L431PL1249PnonsyncTccCc1341310.9776124010-4012
ORF1ab/nsp3431L431PL1249PnonsyncTCcCA13420.01492544010-4012
ORF1ab/nsp3431L431PL1249PnonsyncTCcCT13410.007462694010-4012
ORF1ab/nsp3431L431IL1249InonsynCtcAtc1201180.9833334010-4012
ORF1ab/nsp3431L431IL1249InonsynCtCAtA12010.008333334010-4012
ORF1ab/nsp3431L431IL1249InonsynCtCAtT12010.008333334010-4012
ORF1ab/nsp3431L431HL1249HnonsyncTccAc747414010-4012
ORF1ab/nsp3431L431delL1249deldelCTC---737314010-4012
ORF1ab/nsp3431L431VL1249VnonsynCtcGtc970.7777784010-4012
ORF1ab/nsp3431L431VL1249VnonsynCtCGtA910.1111114010-4012
ORF1ab/nsp3431L431VL1249VnonsynCtCGtG910.1111114010-4012
ORF1ab/nsp3431L431SL1249SnonsynCTcTCc520.44010-4012
ORF1ab/nsp3431L431SL1249SnonsynCTCTCT520.44010-4012
ORF1ab/nsp3431L431SL1249SnonsynCTcAGc510.24010-4012
ORF1ab/nsp3431L431del2L1249del2delCTC--N420.54010-4012
ORF1ab/nsp3431L431del2L1249del2delCTc--c420.54010-4012
ORF1ab/nsp3431L431GL1249GnonsynCTCGGG310.3333334010-4012
ORF1ab/nsp3431L431GL1249GnonsynCTcGGc310.3333334010-4012
ORF1ab/nsp3431L431GL1249GnonsynCTCGGA310.3333334010-4012
ORF1ab/nsp3431L431del1L1249del1delcTcc-c1114010-4012
ORF1ab/nsp3431L431WL1249WnonsynCTCTGG1114010-4012
ORF1ab/nsp3431L431CL1249CnonsynCTcTGc1114010-4012
ORF1ab/nsp3431L431XL1249XnonsynCTCTGA1114010-4012

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3431L431LctCctT76037652All0.001454
ORF1ab/nsp3431L431LctCctA447652All0.000008
ORF1ab/nsp3431L431LctCctG37652All0.000001
ORF1ab/nsp3431L431LCtCTtA17652All0
ORF1ab/nsp3431L431LCtCTtG17652All0
ORF1ab/nsp3431L431LctCctT36123612AY.30.035926
ORF1ab/nsp3431L431FCtcTtc15891590All0.000304
ORF1ab/nsp3431L431FCtCTtT11590All0
ORF1ab/nsp3431L431LctCctT12661278B.1.1.70.001133
ORF1ab/nsp3431L431LctCctA121278B.1.1.70.000011
ORF1ab/nsp3431L431LctCctT292292B.1.177.550.680653
ORF1ab/nsp3431L431LctCctT285291AY.40.000444
ORF1ab/nsp3431L431LctCctA6291AY.40.000009
ORF1ab/nsp3431L431FCtcTtc226226B.1.1.70.000202
ORF1ab/nsp3431L431FCtcTtc208208AY.40.000324
ORF1ab/nsp3431L431LctCctT199199AY.1030.001236
ORF1ab/nsp3431L431FCtcTtc175175B.1.1770.002304
ORF1ab/nsp3431L431LctCctT174174AY.4.10.128319
ORF1ab/nsp3431L431RcTccGc163163All0.000031
ORF1ab/nsp3431L431LctCctT159160C.370.018454
ORF1ab/nsp3431L431LctCctA1160C.370.000116
ORF1ab/nsp3431L431LctCctT139139B.1.617.20.000523
ORF1ab/nsp3431L431PcTccCc131134All0.000025
ORF1ab/nsp3431L431PcTCcCA2134All0
ORF1ab/nsp3431L431PcTCcCT1134All0
ORF1ab/nsp3431L431ICtcAtc118120All0.000023
ORF1ab/nsp3431L431ICtCAtA1120All0
ORF1ab/nsp3431L431ICtCAtT1120All0
ORF1ab/nsp3431L431LctCctT104104AY.60.004277
ORF1ab/nsp3431L431LctCctT9598B.1.20.000837
ORF1ab/nsp3431L431LctCctA398B.1.20.000026
ORF1ab/nsp3431L431FCtcTtc8585AY.620.037037
ORF1ab/nsp3431L431LctCctT7979AY.320.042066
ORF1ab/nsp3431L431LctCctT7676AY.420.003057
ORF1ab/nsp3431L431FCtcTtc7575B.1.617.20.000282
ORF1ab/nsp3431L431HcTccAc7474All0.000014
ORF1ab/nsp3431L431FCtcTtc7474AY.30.000736
ORF1ab/nsp3431L431delCTC---7373All0.000014
ORF1ab/nsp3431L431LctCctT6970B.1.1770.000909
ORF1ab/nsp3431L431LctCctA170B.1.1770.000013
ORF1ab/nsp3431L431RcTccGc6565B.1.1770.000856
ORF1ab/nsp3431L431LctCctT5959B.1.1.5190.002343
ORF1ab/nsp3431L431FCtcTtc5757AY.1030.000354
ORF1ab/nsp3431L431FCtcTtc5555AY.250.000331
ORF1ab/nsp3431L431LctCctT5455AY.440.000329
ORF1ab/nsp3431L431LctCctA155AY.440.000006
ORF1ab/nsp3431L431LctCctT5555B.1.5260.001293
ORF1ab/nsp3431L431FCtcTtc4949AY.60.002015
ORF1ab/nsp3431L431FCtcTtc4545AY.440.000274
ORF1ab/nsp3431L431LctCctT3643B.10.00033
ORF1ab/nsp3431L431LctCctA743B.10.000064
ORF1ab/nsp3431L431HcTccAc4343B.1.1.70.000038
ORF1ab/nsp3431L431LctCctT3939B.1.1.3680.12037
ORF1ab/nsp3431L431PcTccCc3939B.1.1.4361
ORF1ab/nsp3431L431LctCctT3838AY.200.001477
ORF1ab/nsp3431L431LctCctT3838AY.540.003623
ORF1ab/nsp3431L431LctCctT3535R.10.00315
ORF1ab/nsp3431L431FCtcTtc3333AY.910.024105
ORF1ab/nsp3431L431RcTccGc3333B.1.160.300.098214
ORF1ab/nsp3431L431FCtcTtc3333B.1.20.000291
ORF1ab/nsp3431L431LctCctT3132AY.430.000137
ORF1ab/nsp3431L431LctCctA132AY.430.000004
ORF1ab/nsp3431L431LctCctT3031AY.250.00018
ORF1ab/nsp3431L431LctCctA131AY.250.000006
ORF1ab/nsp3431L431LctCctT2828AY.390.000692
ORF1ab/nsp3431L431FCtcTtc2525B.1.3510.000743
ORF1ab/nsp3431L431LctCctT2323B.1.110.30.016523
ORF1ab/nsp3431L431LctCctT2222AY.1020.000583
ORF1ab/nsp3431L431LctCctT2122B.1.1600.000655
ORF1ab/nsp3431L431LctCctG122B.1.1600.000031
ORF1ab/nsp3431L431LctCctT2121AY.1170.001775
ORF1ab/nsp3431L431ICtcAtc2121AY.40.000033
ORF1ab/nsp3431L431FCtcTtc2121AY.98.10.001017
ORF1ab/nsp3431L431delCTC---2121B.1.1.70.000019
ORF1ab/nsp3431L431FCtcTtc2121B.1.1600.000655
ORF1ab/nsp3431L431LctCctT2121B.1.2580.001397
ORF1ab/nsp3431L431FCtcTtc2020AY.9.10.001674
ORF1ab/nsp3431L431LctCctT2020B.1.4270.00101
ORF1ab/nsp3431L431LctCctT1519B.1.5250.001697
ORF1ab/nsp3431L431LctCctA419B.1.5250.000453
ORF1ab/nsp3431L431FCtcTtc1818AY.430.00008
ORF1ab/nsp3431L431FCtcTtc1717AY.260.000481
ORF1ab/nsp3431L431ICtcAtc1717AY.430.000075
ORF1ab/nsp3431L431LctCctT1717AY.610.001781
ORF1ab/nsp3431L431FCtcTtc1717P.10.000268
ORF1ab/nsp3431L431RcTccGc1717R.10.00153
ORF1ab/nsp3431L431FCtcTtc1616B.10.000147
ORF1ab/nsp3431L431FCtcTtc1616B.1.1.1700.01995
ORF1ab/nsp3431L431FCtcTtc1515AY.590.007945
ORF1ab/nsp3431L431LctCctT1515Q.30.002175
ORF1ab/nsp3431L431LctCctT1414AY.1200.000521
ORF1ab/nsp3431L431LctCctT1414AY.290.000221
ORF1ab/nsp3431L431LctCctT1414B.1.10.000254
ORF1ab/nsp3431L431ICtcAtc1314B.1.1.70.000012
ORF1ab/nsp3431L431ICtCAtA114B.1.1.70.000001
ORF1ab/nsp3431L431LctCctT1314P.10.000205
ORF1ab/nsp3431L431LctCctG114P.10.000016
ORF1ab/nsp3431L431HcTccAc1313B.1.2580.000865
ORF1ab/nsp3431L431LctCctT1212AY.4.20.00026
ORF1ab/nsp3431L431LctCctT1212AY.920.003447
ORF1ab/nsp3431L431LctCctT1212B.1.3510.000357
ORF1ab/nsp3431L431FCtcTtc1212B.1.4290.000282
ORF1ab/nsp3431L431LctCctT1212B.1.596.10.11215
ORF1ab/nsp3431L431FCtcTtc1111AY.530.003163
ORF1ab/nsp3431L431FCtcTtc1111B.1.10.0002
ORF1ab/nsp3431L431FCtcTtc1111B.1.220.014493
ORF1ab/nsp3431L431LctCctT1111B.1.3490.007863
ORF1ab/nsp3431L431FCtcTtc1111B.1.351.20.003328
ORF1ab/nsp3431L431LctCctT1010B.1.258.170.00104
ORF1ab/nsp3431L431FCtcTtc1010B.1.3670.007924
ORF1ab/nsp3431L431FCtcTtc1010B.1.3890.01002
ORF1ab/nsp3431L431VCtcGtc79All0.000001
ORF1ab/nsp3431L431VCtCGtA19All0
ORF1ab/nsp3431L431VCtCGtG19All0
ORF1ab/nsp3431L431FCtcTtc99AY.1190.000318
ORF1ab/nsp3431L431LctCctT99AY.50.000186
ORF1ab/nsp3431L431FCtcTtc99B.1.5250.001018
ORF1ab/nsp3431L431ICtcAtc99B.1.617.20.000034
ORF1ab/nsp3431L431ICtcAtc88AY.740.000925
ORF1ab/nsp3431L431LctCctT88AY.930.002185
ORF1ab/nsp3431L431PcTccCc88B.1.1.3760.047619
ORF1ab/nsp3431L431LctCctT88B.1.1.4160.00724
ORF1ab/nsp3431L431RcTccGc88B.1.1.70.000007
ORF1ab/nsp3431L431LctCctT78B.1.5960.00061
ORF1ab/nsp3431L431LctCctA18B.1.5960.000087
ORF1ab/nsp3431L431FCtcTtc77AY.1000.000322
ORF1ab/nsp3431L431LctCctT77AY.840.003062
ORF1ab/nsp3431L431LctCctT77B.1.1.2650.022082
ORF1ab/nsp3431L431FCtcTtc77B.1.1.280.002179
ORF1ab/nsp3431L431PcTccCc77B.1.1.70.000006
ORF1ab/nsp3431L431LctCctT77B.1.177.160.004651
ORF1ab/nsp3431L431RcTccGc77B.1.3460.009174
ORF1ab/nsp3431L431FCtcTtc77B.1.36.170.003458
ORF1ab/nsp3431L431PcTccCc77B.1.617.20.000026
ORF1ab/nsp3431L431FCtcTtc77P.20.001306
ORF1ab/nsp3431L431LctCctT46AY.1190.000141
ORF1ab/nsp3431L431LctCctA26AY.1190.000071
ORF1ab/nsp3431L431LctCctT56AY.260.000142
ORF1ab/nsp3431L431LctCctA16AY.260.000028
ORF1ab/nsp3431L431PcTccCc66AY.40.000009
ORF1ab/nsp3431L431LctCctT66AY.46.60.000433
ORF1ab/nsp3431L431LctCctT66AY.470.000187
ORF1ab/nsp3431L431FCtcTtc66B.1.1.5190.000238
ORF1ab/nsp3431L431FCtcTtc66B.1.1.630.002315
ORF1ab/nsp3431L431FCtcTtc66B.1.36.290.003104
ORF1ab/nsp3431L431LctCctT56B.1.36.290.002587
ORF1ab/nsp3431L431LctCctA16B.1.36.290.000517
ORF1ab/nsp3431L431LctCctT66B.1.6210.000531
ORF1ab/nsp3431L431RcTccGc66P.10.000095
ORF1ab/nsp3431L431LctCctT66P.1.140.000287
ORF1ab/nsp3431L431LctCctT350.166667
ORF1ab/nsp3431L431LctCctA250.111111
ORF1ab/nsp3431L431SCTCTCT25All0
ORF1ab/nsp3431L431SCTcTCc25All0
ORF1ab/nsp3431L431SCTcAGc15All0
ORF1ab/nsp3431L431LctCctT55AY.230.000349
ORF1ab/nsp3431L431FCtcTtc55AY.290.000079
ORF1ab/nsp3431L431ICtcAtc45AY.30.00004
ORF1ab/nsp3431L431ICtCAtT15AY.30.00001
ORF1ab/nsp3431L431FCtcTtc55AY.460.00052
ORF1ab/nsp3431L431FCtcTtc55AY.750.00028
ORF1ab/nsp3431L431PcTccCc55AY.990.005247
ORF1ab/nsp3431L431LctCctT55B.1.3890.00501
ORF1ab/nsp3431L431LctCctT55B.1.4290.000118
ORF1ab/nsp3431L431LctCctT55B.1.6180.020161
ORF1ab/nsp3431L431LctCctT55B.1.621.10.002529
ORF1ab/nsp3431L431LctCctT55C.37.10.013089
ORF1ab/nsp3431L431FCtcTtc55P.1.140.000239
ORF1ab/nsp3431L431PcTCcCA240.111111
ORF1ab/nsp3431L431PcTCcCT140.055556
ORF1ab/nsp3431L431PcTccCc140.055556
ORF1ab/nsp3431L431del2CTc--c24All0
ORF1ab/nsp3431L431del2CTC--N24All0
ORF1ab/nsp3431L431LctCctT44AY.1000.000184
ORF1ab/nsp3431L431ICtcAtc44AY.1030.000025
ORF1ab/nsp3431L431LctCctT44AY.1130.00057
ORF1ab/nsp3431L431PcTccCc44AY.250.000024
ORF1ab/nsp3431L431FCtcTtc44AY.390.000099
ORF1ab/nsp3431L431ICtcAtc44AY.390.000099
ORF1ab/nsp3431L431FCtcTtc44AY.39.10.000158
ORF1ab/nsp3431L431delCTC---44AY.40.000006
ORF1ab/nsp3431L431HcTccAc44AY.40.000006
ORF1ab/nsp3431L431PcTccCc44AY.460.000416
ORF1ab/nsp3431L431LctCctT44AY.46.40.000658
ORF1ab/nsp3431L431FCtcTtc44AY.470.000124
ORF1ab/nsp3431L431PcTccCc44AY.540.000381
ORF1ab/nsp3431L431ICtcAtc44AY.690.000747
ORF1ab/nsp3431L431FCtcTtc44AY.9.20.000147
ORF1ab/nsp3431L431LctCctT44B0.000511
ORF1ab/nsp3431L431delCTC---44B.10.000037
ORF1ab/nsp3431L431LctCctT44B.1.1.2080.04878
ORF1ab/nsp3431L431FCtcTtc44B.1.1.2840.00043
ORF1ab/nsp3431L431LctCctT44B.1.2410.003247
ORF1ab/nsp3431L431LctCctT44B.1.2430.000278
ORF1ab/nsp3431L431RcTccGc44B.1.3510.000119
ORF1ab/nsp3431L431LctCctT44B.1.351.20.00121
ORF1ab/nsp3431L431LctCctT44B.1.360.000584
ORF1ab/nsp3431L431FCtcTtc44B.1.4270.000202
ORF1ab/nsp3431L431FCtcTtc44B.1.5260.000094
ORF1ab/nsp3431L431LctCctT33A.20.001985
ORF1ab/nsp3431L431GCTcGGc13All0
ORF1ab/nsp3431L431GCTCGGA13All0
ORF1ab/nsp3431L431GCTCGGG13All0
ORF1ab/nsp3431L431FCtcTtc33AY.1020.00008
ORF1ab/nsp3431L431LctCctT33AY.1060.001005
ORF1ab/nsp3431L431LctCctT33AY.1140.000693
ORF1ab/nsp3431L431LctCctT33AY.1180.000188
ORF1ab/nsp3431L431FCtcTtc33AY.140.000264
ORF1ab/nsp3431L431LctCctT33AY.170.02459
ORF1ab/nsp3431L431delCTC---33AY.250.000018
ORF1ab/nsp3431L431ICtcAtc33AY.250.000018
ORF1ab/nsp3431L431RcTccGc33AY.260.000085
ORF1ab/nsp3431L431FCtcTtc33AY.4.20.000065
ORF1ab/nsp3431L431PcTccCc33AY.470.000093
ORF1ab/nsp3431L431LctCctT33AY.690.00056
ORF1ab/nsp3431L431LctCctT33AY.7.10.000338
ORF1ab/nsp3431L431LctCctT33AY.730.001996
ORF1ab/nsp3431L431LctCctT33AY.740.000347
ORF1ab/nsp3431L431LctCctT33AY.950.002283
ORF1ab/nsp3431L431LctCctT33AY.99.20.000276
ORF1ab/nsp3431L431PcTccCc33B.10.000027
ORF1ab/nsp3431L431HcTccAc33B.10.000027
ORF1ab/nsp3431L431PcTccCc33B.1.1.1660.1
ORF1ab/nsp3431L431LctCctT33B.1.1.280.000934
ORF1ab/nsp3431L431FCtcTtc33B.1.1.3060.001315
ORF1ab/nsp3431L431VCtCGtG13B.1.1.330.000421
ORF1ab/nsp3431L431VCtCGtA13B.1.1.330.000421
ORF1ab/nsp3431L431GCTCGGG13B.1.1.330.000421
ORF1ab/nsp3431L431GCTCGGA13B.1.1.330.000421
ORF1ab/nsp3431L431GCTcGGc13B.1.1.330.000421
ORF1ab/nsp3431L431VCtcGtc13B.1.1.330.000421
ORF1ab/nsp3431L431LctCctT33B.1.1.4530.025424
ORF1ab/nsp3431L431FCtcTtc33B.1.177.180.00348
ORF1ab/nsp3431L431LctCctT33B.1.177.750.003122
ORF1ab/nsp3431L431FCtcTtc33B.1.2430.000209
ORF1ab/nsp3431L431LctCctT33B.1.258.140.002941
ORF1ab/nsp3431L431LctCctT33B.1.5610.001191
ORF1ab/nsp3431L431FCtcTtc33B.1.6210.000266
ORF1ab/nsp3431L431FCtcTtc33C.370.000348
ORF1ab/nsp3431L431LctCctT33P.1.150.000697
ORF1ab/nsp3431L431FCtcTtc33Q.30.000435
ORF1ab/nsp3431L431del2CTC--N220.111111
ORF1ab/nsp3431L431FCtCTtT120.055556
ORF1ab/nsp3431L431FCtcTtc120.055556
ORF1ab/nsp3431L431SCTcTCc120.055556
ORF1ab/nsp3431L431SCTCTCT120.055556
ORF1ab/nsp3431L431LctCctT22A.2.5.30.020619
ORF1ab/nsp3431L431PcTccCc22AY.1000.000092
ORF1ab/nsp3431L431LctCctT22AY.1040.003968
ORF1ab/nsp3431L431LctCctT22AY.1100.000225
ORF1ab/nsp3431L431LctCctT22AY.1110.000366
ORF1ab/nsp3431L431LctCctT22AY.1160.000574
ORF1ab/nsp3431L431FCtcTtc22AY.1160.000574
ORF1ab/nsp3431L431FCtcTtc22AY.1210.000271
ORF1ab/nsp3431L431FCtcTtc22AY.200.000078
ORF1ab/nsp3431L431LctCctT22AY.270.000129
ORF1ab/nsp3431L431FCtcTtc22AY.280.003781
ORF1ab/nsp3431L431LctCctT22AY.340.000194
ORF1ab/nsp3431L431LctCctT22AY.370.000632
ORF1ab/nsp3431L431RcTccGc22AY.390.000049
ORF1ab/nsp3431L431LctCctT22AY.39.10.000079
ORF1ab/nsp3431L431FCtcTtc22AY.4.40.000818
ORF1ab/nsp3431L431delCTC---22AY.4.50.000215
ORF1ab/nsp3431L431ICtcAtc22AY.400.001929
ORF1ab/nsp3431L431FCtcTtc22AY.420.00008
ORF1ab/nsp3431L431PcTccCc22AY.430.000009
ORF1ab/nsp3431L431PcTccCc22AY.440.000012
ORF1ab/nsp3431L431PcTccCc22AY.450.000243
ORF1ab/nsp3431L431FCtcTtc22AY.50.000041
ORF1ab/nsp3431L431FCtcTtc22AY.610.00021
ORF1ab/nsp3431L431LctCctT22AY.630.000774
ORF1ab/nsp3431L431LctCctT22AY.680.000547
ORF1ab/nsp3431L431FCtcTtc22AY.75.10.000361
ORF1ab/nsp3431L431LctCctT22AY.9.20.000073
ORF1ab/nsp3431L431LctCctT22AY.980.000158
ORF1ab/nsp3431L431ICtcAtc22B.10.000018
ORF1ab/nsp3431L431SCTcAGc12B.10.000009
ORF1ab/nsp3431L431SCTcTCc12B.10.000009
ORF1ab/nsp3431L431PcTccCc22B.1.10.000036
ORF1ab/nsp3431L431LCtCTtA12B.1.1.330.000421
ORF1ab/nsp3431L431LCtCTtG12B.1.1.330.000421
ORF1ab/nsp3431L431FCtcTtc22B.1.1.4200.002012
ORF1ab/nsp3431L431ICtcAtc22B.1.1770.000026
ORF1ab/nsp3431L431PcTccCc22B.1.1770.000026
ORF1ab/nsp3431L431LctCctT22B.1.177.210.000153
ORF1ab/nsp3431L431delCTC---22B.1.177.40.000422
ORF1ab/nsp3431L431LctCctT22B.1.177.570.000562
ORF1ab/nsp3431L431ICtcAtc22B.1.20.000018
ORF1ab/nsp3431L431PcTccCc22B.1.20.000018
ORF1ab/nsp3431L431ICtcAtc22B.1.2410.001623
ORF1ab/nsp3431L431delCTC---22B.1.258.170.000208
ORF1ab/nsp3431L431ICtcAtc22B.1.30.005236
ORF1ab/nsp3431L431ICtcAtc22B.1.3510.000059
ORF1ab/nsp3431L431PcTccCc22B.1.3510.000059
ORF1ab/nsp3431L431PcTccCc22B.1.36.10.002281
ORF1ab/nsp3431L431LctCctT22B.1.36.160.002849
ORF1ab/nsp3431L431LctCctT22B.1.3750.001639
ORF1ab/nsp3431L431LctCctT22B.1.4160.002538
ORF1ab/nsp3431L431HcTccAc22B.1.4290.000047
ORF1ab/nsp3431L431FCtcTtc22B.1.4700.002809
ORF1ab/nsp3431L431LctCctT22B.1.4970.00063
ORF1ab/nsp3431L431PcTccCc22B.1.5250.000226
ORF1ab/nsp3431L431LctCctT22B.1.5760.001813
ORF1ab/nsp3431L431LctCctT22B.1.5770.001375
ORF1ab/nsp3431L431LctCctT22B.1.5800.00813
ORF1ab/nsp3431L431RcTccGc22B.1.5950.000522
ORF1ab/nsp3431L431delCTC---22B.1.5960.000174
ORF1ab/nsp3431L431LctCctT22B.1.617.10.000258
ORF1ab/nsp3431L431VCtcGtc22B.1.6200.001892
ORF1ab/nsp3431L431RcTccGc22B.1.6210.000177
ORF1ab/nsp3431L431delCTC---22B.1.6210.000177
ORF1ab/nsp3431L431FCtcTtc22B.1.621.10.001012
ORF1ab/nsp3431L431ICtcAtc22C.370.000232
ORF1ab/nsp3431L431delCTC---22P.10.000032
ORF1ab/nsp3431L431ICtcAtc22P.10.000032
ORF1ab/nsp3431L431delCTC---22P.1.120.000968
ORF1ab/nsp3431L431FCtcTtc22P.1.70.000639
ORF1ab/nsp3431L431LctCctT22P.1.70.000639
ORF1ab/nsp3431L431FCtcTtc22Q.20.001227
ORF1ab/nsp3431L431FCtcTtc22Q.80.00033
ORF1ab/nsp3431L431LctCctT22Z.10.00578
ORF1ab/nsp3431L431RcTccGc11A.2.40.003367
ORF1ab/nsp3431L431LctCctT11A.23.10.000704
ORF1ab/nsp3431L431LctCctT11A.270.001656
ORF1ab/nsp3431L431LctCctT11A.290.005319
ORF1ab/nsp3431L431WCTCTGG11All0
ORF1ab/nsp3431L431del1cTcc-c11All0
ORF1ab/nsp3431L431XCTCTGA11All0
ORF1ab/nsp3431L431CCTcTGc11All0
ORF1ab/nsp3431L431LctCctT11AU.30.00211
ORF1ab/nsp3431L431FCtcTtc11AY.1010.00049
ORF1ab/nsp3431L431PcTccCc11AY.1020.000027
ORF1ab/nsp3431L431HcTccAc11AY.1030.000006
ORF1ab/nsp3431L431PcTccCc11AY.1030.000006
ORF1ab/nsp3431L431SCTCTCT11AY.1030.000006
ORF1ab/nsp3431L431LctCctT11AY.1050.000643
ORF1ab/nsp3431L431RcTccGc11AY.1130.000142
ORF1ab/nsp3431L431FCtcTtc11AY.1130.000142
ORF1ab/nsp3431L431PcTccCc11AY.1140.000231
ORF1ab/nsp3431L431FCtcTtc11AY.116.10.000311
ORF1ab/nsp3431L431FCtcTtc11AY.1170.000085
ORF1ab/nsp3431L431delCTC---11AY.1190.000035
ORF1ab/nsp3431L431FCtcTtc11AY.1200.000037
ORF1ab/nsp3431L431delCTC---11AY.1200.000037
ORF1ab/nsp3431L431FCtcTtc11AY.120.10.000321
ORF1ab/nsp3431L431LctCctT11AY.120.2.10.000498
ORF1ab/nsp3431L431FCtcTtc11AY.130.000161
ORF1ab/nsp3431L431ICtcAtc11AY.160.00038
ORF1ab/nsp3431L431PcTccCc11AY.20.000356
ORF1ab/nsp3431L431FCtcTtc11AY.230.00007
ORF1ab/nsp3431L431ICtcAtc11AY.230.00007
ORF1ab/nsp3431L431FCtcTtc11AY.330.000067
ORF1ab/nsp3431L431RcTccGc11AY.330.000067
ORF1ab/nsp3431L431delCTC---11AY.360.000148
ORF1ab/nsp3431L431PcTccCc11AY.360.000148
ORF1ab/nsp3431L431LctCctT11AY.360.000148
ORF1ab/nsp3431L431PcTccCc11AY.390.000025
ORF1ab/nsp3431L431LctCctT11AY.4.30.000842
ORF1ab/nsp3431L431FCtcTtc11AY.410.000294
ORF1ab/nsp3431L431RcTccGc11AY.410.000294
ORF1ab/nsp3431L431ICtcAtc11AY.440.000006
ORF1ab/nsp3431L431RcTccGc11AY.440.000006
ORF1ab/nsp3431L431RcTccGc11AY.450.000122
ORF1ab/nsp3431L431LctCctT11AY.450.000122
ORF1ab/nsp3431L431RcTccGc11AY.460.000104
ORF1ab/nsp3431L431LctCctT11AY.460.000104
ORF1ab/nsp3431L431FCtcTtc11AY.46.20.000635
ORF1ab/nsp3431L431delCTC---11AY.46.60.000072
ORF1ab/nsp3431L431HcTccAc11AY.470.000031
ORF1ab/nsp3431L431ICtcAtc11AY.470.000031
ORF1ab/nsp3431L431FCtcTtc11AY.480.000465
ORF1ab/nsp3431L431FCtcTtc11AY.490.003195
ORF1ab/nsp3431L431ICtcAtc11AY.50.000021
ORF1ab/nsp3431L431PcTccCc11AY.50.000021
ORF1ab/nsp3431L431LctCctT11AY.5.30.000337
ORF1ab/nsp3431L431ICtcAtc11AY.5.40.000277
ORF1ab/nsp3431L431ICtcAtc11AY.520.000814
ORF1ab/nsp3431L431FCtcTtc11AY.520.000814
ORF1ab/nsp3431L431LctCctT11AY.530.000288
ORF1ab/nsp3431L431LctCctT11AY.550.000917
ORF1ab/nsp3431L431LctCctT11AY.590.00053
ORF1ab/nsp3431L431PcTccCc11AY.610.000105
ORF1ab/nsp3431L431LctCctT11AY.620.000436
ORF1ab/nsp3431L431FCtcTtc11AY.650.000533
ORF1ab/nsp3431L431LctCctT11AY.660.00107
ORF1ab/nsp3431L431HcTccAc11AY.690.000187
ORF1ab/nsp3431L431FCtcTtc11AY.7.10.000113
ORF1ab/nsp3431L431LctCctT11AY.7.20.000559
ORF1ab/nsp3431L431PcTccCc11AY.75.10.00018
ORF1ab/nsp3431L431LctCctT11AY.770.001127
ORF1ab/nsp3431L431FCtcTtc11AY.840.000437
ORF1ab/nsp3431L431LctCctT11AY.90.000068
ORF1ab/nsp3431L431FCtcTtc11AY.90.000068
ORF1ab/nsp3431L431LctCctT11AY.9.10.000084
ORF1ab/nsp3431L431HcTccAc11B.1.10.000018
ORF1ab/nsp3431L431ICtcAtc11B.1.10.000018
ORF1ab/nsp3431L431delCTC---11B.1.10.000018
ORF1ab/nsp3431L431delCTC---11B.1.1.10.000327
ORF1ab/nsp3431L431LctCctT11B.1.1.100.001115
ORF1ab/nsp3431L431PcTccCc11B.1.1.1150.008929
ORF1ab/nsp3431L431delCTC---11B.1.1.1920.002309
ORF1ab/nsp3431L431LctCctT11B.1.1.2070.001182
ORF1ab/nsp3431L431LctCctT11B.1.1.2140.000055
ORF1ab/nsp3431L431delCTC---11B.1.1.2220.000204
ORF1ab/nsp3431L431FCtcTtc11B.1.1.2360.006897
ORF1ab/nsp3431L431PcTccCc11B.1.1.280.000311
ORF1ab/nsp3431L431RcTccGc11B.1.1.2840.000107
ORF1ab/nsp3431L431LctCctT11B.1.1.2840.000107
ORF1ab/nsp3431L431LctCctT11B.1.1.2850.006536
ORF1ab/nsp3431L431delCTC---11B.1.1.3010.001179
ORF1ab/nsp3431L431LctCctT11B.1.1.3180.000302
ORF1ab/nsp3431L431delCTC---11B.1.1.330.000421
ORF1ab/nsp3431L431FCtcTtc11B.1.1.330.000421
ORF1ab/nsp3431L431XCTCTGA11B.1.1.330.000421
ORF1ab/nsp3431L431CCTcTGc11B.1.1.330.000421
ORF1ab/nsp3431L431WCTCTGG11B.1.1.330.000421
ORF1ab/nsp3431L431LctCctT11B.1.1.3540.004386
ORF1ab/nsp3431L431LctCctT11B.1.1.3690.000446
ORF1ab/nsp3431L431LctCctT11B.1.1.3850.004464
ORF1ab/nsp3431L431FCtcTtc11B.1.1.3970.002252
ORF1ab/nsp3431L431LctCctT11B.1.1.3970.002252
ORF1ab/nsp3431L431PcTccCc11B.1.1.4340.000349
ORF1ab/nsp3431L431delCTC---11B.1.1.5190.00004
ORF1ab/nsp3431L431FCtcTtc11B.1.1.5240.020833
ORF1ab/nsp3431L431del2CTc--c11B.1.1.70.000001
ORF1ab/nsp3431L431VCtcGtc11B.1.1.70.000001
ORF1ab/nsp3431L431FCtcTtc11B.1.1.700.000341
ORF1ab/nsp3431L431FCtcTtc11B.1.160.200.008929
ORF1ab/nsp3431L431delCTC---11B.1.160.320.004292
ORF1ab/nsp3431L431FCtcTtc11B.1.1640.014925
ORF1ab/nsp3431L431delCTC---11B.1.1770.000013
ORF1ab/nsp3431L431delCTC---11B.1.177.160.000664
ORF1ab/nsp3431L431FCtcTtc11B.1.177.170.000821
ORF1ab/nsp3431L431HcTccAc11B.1.177.210.000076
ORF1ab/nsp3431L431delCTC---11B.1.177.210.000076
ORF1ab/nsp3431L431delCTC---11B.1.177.550.002331
ORF1ab/nsp3431L431delCTC---11B.1.177.570.000281
ORF1ab/nsp3431L431PcTccCc11B.1.177.620.001192
ORF1ab/nsp3431L431HcTccAc11B.1.177.750.001041
ORF1ab/nsp3431L431FCtcTtc11B.1.177.780.009709
ORF1ab/nsp3431L431ICtcAtc11B.1.177.830.001481
ORF1ab/nsp3431L431FCtcTtc11B.1.177.840.006667
ORF1ab/nsp3431L431LctCctT11B.1.177.870.000728
ORF1ab/nsp3431L431delCTC---11B.1.20.000009
ORF1ab/nsp3431L431RcTccGc11B.1.20.000009
ORF1ab/nsp3431L431LctCctG11B.1.2210.000071
ORF1ab/nsp3431L431FCtcTtc11B.1.2210.000071
ORF1ab/nsp3431L431delCTC---11B.1.2210.000071
ORF1ab/nsp3431L431LctCctT11B.1.221.30.000833
ORF1ab/nsp3431L431ICtcAtc11B.1.2220.001692
ORF1ab/nsp3431L431delCTC---11B.1.230.006061
ORF1ab/nsp3431L431RcTccGc11B.1.2430.00007
ORF1ab/nsp3431L431ICtcAtc11B.1.2580.000067
ORF1ab/nsp3431L431PcTccCc11B.1.2580.000067
ORF1ab/nsp3431L431LctCctT11B.1.3110.000275
ORF1ab/nsp3431L431FCtcTtc11B.1.360.000146
ORF1ab/nsp3431L431delCTC---11B.1.360.000146
ORF1ab/nsp3431L431FCtcTtc11B.1.36.160.001425
ORF1ab/nsp3431L431LctCctT11B.1.36.240.006173
ORF1ab/nsp3431L431LctCctT11B.1.36.270.000763
ORF1ab/nsp3431L431LctCctT11B.1.3690.000285
ORF1ab/nsp3431L431FCtcTtc11B.1.3690.000285
ORF1ab/nsp3431L431LctCctT11B.1.3930.028571
ORF1ab/nsp3431L431HcTccAc11B.1.3960.000706
ORF1ab/nsp3431L431PcTccCc11B.1.4000.000429
ORF1ab/nsp3431L431FCtcTtc11B.1.4020.009804
ORF1ab/nsp3431L431LctCctT11B.1.4110.003704
ORF1ab/nsp3431L431del2CTc--c11B.1.4150.014286
ORF1ab/nsp3431L431HcTccAc11B.1.416.10.001563
ORF1ab/nsp3431L431VCtcGtc11B.1.4290.000024
ORF1ab/nsp3431L431delCTC---11B.1.4290.000024
ORF1ab/nsp3431L431RcTccGc11B.1.438.10.000107
ORF1ab/nsp3431L431LctCctT11B.1.4560.003268
ORF1ab/nsp3431L431LctCctT11B.1.4680.005714
ORF1ab/nsp3431L431LctCctT11B.1.4700.001404
ORF1ab/nsp3431L431LctCctT11B.1.4930.025641
ORF1ab/nsp3431L431delCTC---11B.1.5260.000024
ORF1ab/nsp3431L431FCtcTtc11B.1.5490.007194
ORF1ab/nsp3431L431FCtcTtc11B.1.5640.000426
ORF1ab/nsp3431L431LctCctT11B.1.5790.011236
ORF1ab/nsp3431L431FCtcTtc11B.1.5960.000087
ORF1ab/nsp3431L431VCtcGtc11B.1.617.10.000129
ORF1ab/nsp3431L431RcTccGc11B.1.617.10.000129
ORF1ab/nsp3431L431RcTccGc11B.1.617.20.000004
ORF1ab/nsp3431L431del1cTcc-c11B.1.617.20.000004
ORF1ab/nsp3431L431delCTC---11B.1.617.20.000004
ORF1ab/nsp3431L431FCtcTtc11B.1.6270.00202
ORF1ab/nsp3431L431LctCctT11B.1.6360.006711
ORF1ab/nsp3431L431LctCctT11B.30.000831
ORF1ab/nsp3431L431FCtcTtc11B.3.10.001658
ORF1ab/nsp3431L431LctCctT11B.400.000364
ORF1ab/nsp3431L431delCTC---11B.570.015152
ORF1ab/nsp3431L431ICtcAtc11B.6.60.000889
ORF1ab/nsp3431L431RcTccGc11C.110.010638
ORF1ab/nsp3431L431LctCctT11C.390.018868
ORF1ab/nsp3431L431HcTccAc11D.20.000075
ORF1ab/nsp3431L431PcTccCc11D.20.000075
ORF1ab/nsp3431L431LctCctT11D.20.000075
ORF1ab/nsp3431L431LctCctT11N.50.001767
ORF1ab/nsp3431L431FCtcTtc11N.50.001767
ORF1ab/nsp3431L431FCtcTtc11P.1.110.010204
ORF1ab/nsp3431L431ICtcAtc11P.1.120.000484
ORF1ab/nsp3431L431VCtcGtc11P.1.150.000232
ORF1ab/nsp3431L431FCtcTtc11P.1.160.000374
ORF1ab/nsp3431L431LctCctT11P.1.170.000162
ORF1ab/nsp3431L431FCtcTtc11P.30.001595
ORF1ab/nsp3431L431LctCctT11Q.10.000126
ORF1ab/nsp3431L431PcTccCc11Q.80.000165
ORF1ab/nsp3431L431delCTC---11R.10.00009
ORF1ab/nsp3431L431delCTC---11U.30.003861