CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 431 | L431L | L1249L | syn | ctC | ctT | 7652 | 7603 | 0.993596 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431L | L1249L | syn | ctC | ctA | 7652 | 44 | 0.00575013 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431L | L1249L | syn | ctC | ctG | 7652 | 3 | 0.000392054 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431L | L1249L | syn | CtC | TtG | 7652 | 1 | 0.000130685 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431L | L1249L | syn | CtC | TtA | 7652 | 1 | 0.000130685 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431F | L1249F | nonsyn | Ctc | Ttc | 1590 | 1589 | 0.999371 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431F | L1249F | nonsyn | CtC | TtT | 1590 | 1 | 0.000628931 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431R | L1249R | nonsyn | cTc | cGc | 163 | 163 | 1 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431P | L1249P | nonsyn | cTc | cCc | 134 | 131 | 0.977612 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431P | L1249P | nonsyn | cTC | cCA | 134 | 2 | 0.0149254 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431P | L1249P | nonsyn | cTC | cCT | 134 | 1 | 0.00746269 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431I | L1249I | nonsyn | Ctc | Atc | 120 | 118 | 0.983333 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431I | L1249I | nonsyn | CtC | AtA | 120 | 1 | 0.00833333 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431I | L1249I | nonsyn | CtC | AtT | 120 | 1 | 0.00833333 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431H | L1249H | nonsyn | cTc | cAc | 74 | 74 | 1 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431del | L1249del | del | CTC | --- | 73 | 73 | 1 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431V | L1249V | nonsyn | Ctc | Gtc | 9 | 7 | 0.777778 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431V | L1249V | nonsyn | CtC | GtA | 9 | 1 | 0.111111 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431V | L1249V | nonsyn | CtC | GtG | 9 | 1 | 0.111111 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431S | L1249S | nonsyn | CTc | TCc | 5 | 2 | 0.4 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431S | L1249S | nonsyn | CTC | TCT | 5 | 2 | 0.4 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431S | L1249S | nonsyn | CTc | AGc | 5 | 1 | 0.2 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431del2 | L1249del2 | del | CTC | --N | 4 | 2 | 0.5 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431del2 | L1249del2 | del | CTc | --c | 4 | 2 | 0.5 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431G | L1249G | nonsyn | CTC | GGG | 3 | 1 | 0.333333 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431G | L1249G | nonsyn | CTc | GGc | 3 | 1 | 0.333333 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431G | L1249G | nonsyn | CTC | GGA | 3 | 1 | 0.333333 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431del1 | L1249del1 | del | cTc | c-c | 1 | 1 | 1 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431W | L1249W | nonsyn | CTC | TGG | 1 | 1 | 1 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431C | L1249C | nonsyn | CTc | TGc | 1 | 1 | 1 | 4010-4012 |
ORF1ab/nsp3 | 431 | L431X | L1249X | nonsyn | CTC | TGA | 1 | 1 | 1 | 4010-4012 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 7603 | 7652 | All | 0.001454 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 44 | 7652 | All | 0.000008 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctG | 3 | 7652 | All | 0.000001 |
ORF1ab/nsp3 | 431 | L431L | CtC | TtA | 1 | 7652 | All | 0 |
ORF1ab/nsp3 | 431 | L431L | CtC | TtG | 1 | 7652 | All | 0 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3612 | 3612 | AY.3 | 0.035926 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1589 | 1590 | All | 0.000304 |
ORF1ab/nsp3 | 431 | L431F | CtC | TtT | 1 | 1590 | All | 0 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1266 | 1278 | B.1.1.7 | 0.001133 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 12 | 1278 | B.1.1.7 | 0.000011 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 292 | 292 | B.1.177.55 | 0.680653 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 285 | 291 | AY.4 | 0.000444 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 6 | 291 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 226 | 226 | B.1.1.7 | 0.000202 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 208 | 208 | AY.4 | 0.000324 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 199 | 199 | AY.103 | 0.001236 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 175 | 175 | B.1.177 | 0.002304 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 174 | 174 | AY.4.1 | 0.128319 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 163 | 163 | All | 0.000031 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 159 | 160 | C.37 | 0.018454 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 1 | 160 | C.37 | 0.000116 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 139 | 139 | B.1.617.2 | 0.000523 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 131 | 134 | All | 0.000025 |
ORF1ab/nsp3 | 431 | L431P | cTC | cCA | 2 | 134 | All | 0 |
ORF1ab/nsp3 | 431 | L431P | cTC | cCT | 1 | 134 | All | 0 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 118 | 120 | All | 0.000023 |
ORF1ab/nsp3 | 431 | L431I | CtC | AtA | 1 | 120 | All | 0 |
ORF1ab/nsp3 | 431 | L431I | CtC | AtT | 1 | 120 | All | 0 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 104 | 104 | AY.6 | 0.004277 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 95 | 98 | B.1.2 | 0.000837 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 3 | 98 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 85 | 85 | AY.62 | 0.037037 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 79 | 79 | AY.32 | 0.042066 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 76 | 76 | AY.42 | 0.003057 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 75 | 75 | B.1.617.2 | 0.000282 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 74 | 74 | All | 0.000014 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 74 | 74 | AY.3 | 0.000736 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 73 | 73 | All | 0.000014 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 69 | 70 | B.1.177 | 0.000909 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 1 | 70 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 65 | 65 | B.1.177 | 0.000856 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 59 | 59 | B.1.1.519 | 0.002343 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 57 | 57 | AY.103 | 0.000354 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 55 | 55 | AY.25 | 0.000331 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 54 | 55 | AY.44 | 0.000329 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 1 | 55 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 55 | 55 | B.1.526 | 0.001293 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 49 | 49 | AY.6 | 0.002015 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 45 | 45 | AY.44 | 0.000274 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 36 | 43 | B.1 | 0.00033 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 7 | 43 | B.1 | 0.000064 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 43 | 43 | B.1.1.7 | 0.000038 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 39 | 39 | B.1.1.368 | 0.12037 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 39 | 39 | B.1.1.436 | 1 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 38 | 38 | AY.20 | 0.001477 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 38 | 38 | AY.54 | 0.003623 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 35 | 35 | R.1 | 0.00315 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 33 | 33 | AY.91 | 0.024105 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 33 | 33 | B.1.160.30 | 0.098214 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 33 | 33 | B.1.2 | 0.000291 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 31 | 32 | AY.43 | 0.000137 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 1 | 32 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 30 | 31 | AY.25 | 0.00018 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 1 | 31 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 28 | 28 | AY.39 | 0.000692 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 25 | 25 | B.1.351 | 0.000743 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 23 | 23 | B.1.110.3 | 0.016523 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 21 | 22 | B.1.160 | 0.000655 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctG | 1 | 22 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 21 | 21 | AY.117 | 0.001775 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 21 | 21 | AY.4 | 0.000033 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 21 | 21 | AY.98.1 | 0.001017 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 21 | 21 | B.1.160 | 0.000655 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 21 | 21 | B.1.258 | 0.001397 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 20 | 20 | AY.9.1 | 0.001674 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 15 | 19 | B.1.525 | 0.001697 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 4 | 19 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 17 | 17 | AY.26 | 0.000481 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 17 | 17 | AY.43 | 0.000075 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 17 | 17 | AY.61 | 0.001781 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 17 | 17 | R.1 | 0.00153 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 16 | 16 | B.1.1.170 | 0.01995 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 15 | 15 | AY.59 | 0.007945 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 15 | 15 | Q.3 | 0.002175 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 14 | 14 | AY.120 | 0.000521 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 14 | 14 | AY.29 | 0.000221 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 14 | 14 | B.1.1 | 0.000254 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 13 | 14 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 431 | L431I | CtC | AtA | 1 | 14 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 13 | 14 | P.1 | 0.000205 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctG | 1 | 14 | P.1 | 0.000016 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 12 | 12 | AY.4.2 | 0.00026 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 12 | 12 | AY.92 | 0.003447 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 12 | 12 | B.1.429 | 0.000282 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 12 | 12 | B.1.596.1 | 0.11215 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 11 | 11 | AY.53 | 0.003163 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 11 | 11 | B.1.22 | 0.014493 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 11 | 11 | B.1.349 | 0.007863 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 11 | 11 | B.1.351.2 | 0.003328 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 10 | 10 | B.1.258.17 | 0.00104 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 10 | 10 | B.1.367 | 0.007924 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 10 | 10 | B.1.389 | 0.01002 |
ORF1ab/nsp3 | 431 | L431V | Ctc | Gtc | 7 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 431 | L431V | CtC | GtA | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 431 | L431V | CtC | GtG | 1 | 9 | All | 0 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 9 | 9 | AY.5 | 0.000186 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 8 | 8 | AY.74 | 0.000925 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 8 | 8 | AY.93 | 0.002185 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 8 | 8 | B.1.1.376 | 0.047619 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 8 | 8 | B.1.1.416 | 0.00724 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 7 | 8 | B.1.596 | 0.00061 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 1 | 8 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 7 | 7 | AY.84 | 0.003062 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 7 | 7 | B.1.1.265 | 0.022082 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 7 | 7 | B.1.177.16 | 0.004651 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 7 | 7 | B.1.346 | 0.009174 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 7 | 7 | B.1.36.17 | 0.003458 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 4 | 6 | AY.119 | 0.000141 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 2 | 6 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 5 | 6 | AY.26 | 0.000142 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 1 | 6 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 6 | 6 | B.1.1.63 | 0.002315 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 5 | 6 | B.1.36.29 | 0.002587 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 1 | 6 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 5 | 0.166667 | |
ORF1ab/nsp3 | 431 | L431L | ctC | ctA | 2 | 5 | 0.111111 | |
ORF1ab/nsp3 | 431 | L431S | CTC | TCT | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 431 | L431S | CTc | TCc | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 431 | L431S | CTc | AGc | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 4 | 5 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 431 | L431I | CtC | AtT | 1 | 5 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 5 | 5 | AY.99 | 0.005247 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 5 | 5 | B.1.389 | 0.00501 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 5 | 5 | B.1.618 | 0.020161 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 5 | 5 | B.1.621.1 | 0.002529 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 5 | 5 | C.37.1 | 0.013089 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 431 | L431P | cTC | cCA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 431 | L431P | cTC | cCT | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 431 | L431del2 | CTc | --c | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 431 | L431del2 | CTC | --N | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 4 | 4 | B.1.1.208 | 0.04878 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 4 | 4 | B.1.241 | 0.003247 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | A.2 | 0.001985 |
ORF1ab/nsp3 | 431 | L431G | CTc | GGc | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 431 | L431G | CTC | GGA | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 431 | L431G | CTC | GGG | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | AY.17 | 0.02459 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 3 | 3 | B.1.1.166 | 0.1 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 431 | L431V | CtC | GtG | 1 | 3 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431V | CtC | GtA | 1 | 3 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431G | CTC | GGG | 1 | 3 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431G | CTC | GGA | 1 | 3 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431G | CTc | GGc | 1 | 3 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431V | Ctc | Gtc | 1 | 3 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | B.1.1.453 | 0.025424 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 3 | 3 | B.1.177.18 | 0.00348 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | B.1.177.75 | 0.003122 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | B.1.258.14 | 0.002941 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp3 | 431 | L431del2 | CTC | --N | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 431 | L431F | CtC | TtT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 431 | L431S | CTc | TCc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 431 | L431S | CTC | TCT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | A.2.5.3 | 0.020619 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | AY.104 | 0.003968 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 431 | L431S | CTc | AGc | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 431 | L431S | CTc | TCc | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 431 | L431L | CtC | TtA | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431L | CtC | TtG | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 431 | L431V | Ctc | Gtc | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | Q.2 | 0.001227 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 2 | 2 | Z.1 | 0.00578 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | A.29 | 0.005319 |
ORF1ab/nsp3 | 431 | L431W | CTC | TGG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 431 | L431del1 | cTc | c-c | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 431 | L431X | CTC | TGA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 431 | L431C | CTc | TGc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 431 | L431S | CTC | TCT | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | B.1.1.115 | 0.008929 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.1.285 | 0.006536 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431X | CTC | TGA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431C | CTc | TGc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431W | CTC | TGG | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp3 | 431 | L431del2 | CTc | --c | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 431 | L431V | Ctc | Gtc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.164 | 0.014925 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.177.78 | 0.009709 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 431 | L431del2 | CTc | --c | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 431 | L431V | Ctc | Gtc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.493 | 0.025641 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.579 | 0.011236 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 431 | L431V | Ctc | Gtc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 431 | L431del1 | cTc | c-c | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 431 | L431R | cTc | cGc | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp3 | 431 | L431H | cTc | cAc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp3 | 431 | L431I | Ctc | Atc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 431 | L431V | Ctc | Gtc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 431 | L431F | Ctc | Ttc | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 431 | L431L | ctC | ctT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 431 | L431P | cTc | cCc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 431 | L431del | CTC | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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