CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 428 | T428I | T1246I | nonsyn | aCt | aTt | 24957 | 24953 | 0.99984 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428I | T1246I | nonsyn | aCT | aTC | 24957 | 3 | 0.000120207 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428I | T1246I | nonsyn | aCT | aTA | 24957 | 1 | 0.0000400689 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428T | T1246T | syn | acT | acC | 174 | 165 | 0.948276 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428T | T1246T | syn | acT | acA | 174 | 7 | 0.0402299 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428T | T1246T | syn | acT | acG | 174 | 2 | 0.0114943 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428A | T1246A | nonsyn | Act | Gct | 93 | 92 | 0.989247 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428A | T1246A | nonsyn | AcT | GcC | 93 | 1 | 0.0107527 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428del | T1246del | del | ACT | --- | 79 | 79 | 1 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428N | T1246N | nonsyn | aCt | aAt | 65 | 64 | 0.984615 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428N | T1246N | nonsyn | aCT | aAC | 65 | 1 | 0.0153846 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428S | T1246S | nonsyn | aCt | aGt | 7 | 6 | 0.857143 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428S | T1246S | nonsyn | Act | Tct | 7 | 1 | 0.142857 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428R | T1246R | nonsyn | ACt | CGt | 5 | 3 | 0.6 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428R | T1246R | nonsyn | ACT | CGA | 5 | 1 | 0.2 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428R | T1246R | nonsyn | aCT | aGA | 5 | 1 | 0.2 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428del2 | T1246del2 | del | ACt | --t | 4 | 4 | 1 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428P | T1246P | nonsyn | Act | Cct | 4 | 3 | 0.75 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428P | T1246P | nonsyn | AcT | CcA | 4 | 1 | 0.25 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428C | T1246C | nonsyn | ACt | TGt | 3 | 3 | 1 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428V | T1246V | nonsyn | ACt | GTt | 3 | 2 | 0.666667 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428V | T1246V | nonsyn | ACT | GTC | 3 | 1 | 0.333333 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428K | T1246K | nonsyn | aCT | aAA | 2 | 2 | 1 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428del1 | T1246del1 | del | acT | ac- | 2 | 1 | 0.5 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428del1 | T1246del1 | del | Act | -ct | 2 | 1 | 0.5 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428Y | T1246Y | nonsyn | ACt | TAt | 1 | 1 | 1 | 4001-4003 |
ORF1ab/nsp3 | 428 | T428L | T1246L | nonsyn | ACT | CTA | 1 | 1 | 1 | 4001-4003 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 24953 | 24957 | All | 0.004773 |
ORF1ab/nsp3 | 428 | T428I | aCT | aTC | 3 | 24957 | All | 0.000001 |
ORF1ab/nsp3 | 428 | T428I | aCT | aTA | 1 | 24957 | All | 0 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 8512 | 8512 | C.37 | 0.987929 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3005 | 3005 | B.1.1.1 | 0.981705 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1741 | 1741 | C.36.3 | 0.987521 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1284 | 1284 | C.35 | 0.993808 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1086 | 1086 | C.36 | 0.989071 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 939 | 939 | C.16 | 0.995758 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 661 | 661 | B.1.1.7 | 0.000592 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 655 | 655 | AY.4 | 0.001019 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 579 | 579 | C.30 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 408 | 408 | C.1 | 0.976077 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 385 | 385 | C.18 | 0.997409 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 364 | 364 | C.37.1 | 0.95288 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 363 | 363 | C.36.3.1 | 0.986413 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 241 | 241 | C.36.1 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 231 | 231 | C.14 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 226 | 226 | C.1.2 | 0.961702 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 224 | 224 | C.8 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 200 | 200 | B.1 | 0.001832 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 165 | 174 | All | 0.000032 |
ORF1ab/nsp3 | 428 | T428T | acT | acA | 7 | 174 | All | 0.000001 |
ORF1ab/nsp3 | 428 | T428T | acT | acG | 2 | 174 | All | 0 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 172 | 172 | C.23 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 168 | 168 | P.2 | 0.031355 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 164 | 164 | AY.103 | 0.001018 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 161 | 161 | B.1.2 | 0.001418 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 149 | 149 | C.30.1 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 148 | 148 | C.2.1 | 0.986667 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 139 | 139 | C.12 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 136 | 136 | C.26 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 130 | 130 | C.3 | 0.992366 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 122 | 122 | C.38 | 0.983871 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 100 | 100 | C.4 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 95 | 95 | B.1.1.153 | 0.104053 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 94 | 94 | C.11 | 1 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 92 | 93 | All | 0.000018 |
ORF1ab/nsp3 | 428 | T428A | AcT | GcC | 1 | 93 | All | 0 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 92 | 92 | B.1.1 | 0.001669 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 82 | 82 | B.1.177.57 | 0.02304 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 79 | 79 | All | 0.000015 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 76 | 76 | B.1.1.375 | 0.904762 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 67 | 67 | B.1.617.2 | 0.000252 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 64 | 65 | All | 0.000012 |
ORF1ab/nsp3 | 428 | T428N | aCT | aAC | 1 | 65 | All | 0 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 62 | 62 | C.2 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 57 | 57 | B.1.525 | 0.00645 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 57 | 57 | B.1.526 | 0.00134 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 55 | 56 | C.31 | 0.982143 |
ORF1ab/nsp3 | 428 | T428I | aCT | aTC | 1 | 56 | C.31 | 0.017857 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 54 | 54 | C.27 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 52 | 52 | C.39 | 0.981132 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 47 | 47 | AY.44 | 0.000286 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 45 | 45 | B.1.177 | 0.000593 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 43 | 43 | C.32 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 41 | 41 | B.1.351 | 0.001219 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 39 | 39 | C.13 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 37 | 37 | C.19 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 36 | 36 | C.40 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 35 | 35 | AY.43 | 0.000155 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 32 | 34 | B.1.1.7 | 0.000029 |
ORF1ab/nsp3 | 428 | T428T | acT | acA | 1 | 34 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 428 | T428T | acT | acG | 1 | 34 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 33 | 33 | B.1.1.372 | 0.022727 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 32 | 32 | AY.103 | 0.000199 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 32 | 32 | AY.33 | 0.002137 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 32 | 32 | C.9 | 0.969697 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 30 | 30 | B.1.609 | 0.014382 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 29 | 29 | C.36.2 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 29 | 29 | C.7 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 27 | 27 | C.34 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 27 | 27 | C.6 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 26 | 26 | AY.25 | 0.000156 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 25 | 25 | C.28 | 1 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 23 | 23 | AY.44 | 0.00014 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 23 | 23 | P.1 | 0.000362 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 22 | 22 | B.1.1.284 | 0.002363 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 19 | 19 | AY.29 | 0.0003 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 19 | 19 | B.1.1.519 | 0.000755 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 19 | 19 | B.1.160 | 0.000593 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 18 | 18 | B.1.214.2 | 0.010791 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 18 | 18 | B.1.429 | 0.000424 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 17 | 17 | C.33 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 16 | 16 | B.1.427 | 0.000808 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 15 | 15 | C.29 | 0.9375 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 15 | 15 | Q.1 | 0.001895 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 14 | 14 | C.22 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 13 | 13 | AY.120 | 0.000483 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 13 | 13 | B.1.36 | 0.001897 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 13 | 13 | C.1.1 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 13 | 13 | C.20 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 12 | 12 | B.1.258.17 | 0.001248 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 12 | 12 | C.17 | 0.666667 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 11 | 11 | AY.106 | 0.003684 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 11 | 11 | AY.20 | 0.000428 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 10 | 11 | B.1 | 0.000092 |
ORF1ab/nsp3 | 428 | T428T | acT | acA | 1 | 11 | B.1 | 0.000009 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 11 | 11 | B.1.177.54 | 0.006671 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 11 | 11 | C.5 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 10 | 10 | AY.53 | 0.002875 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 10 | 10 | AY.99.2 | 0.000922 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 10 | 10 | B.1.1.216 | 0.008905 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 10 | 10 | B.1.177.81 | 0.001893 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 9 | 9 | AY.14 | 0.000792 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 8 | 8 | B.1.1.284 | 0.000859 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 8 | 8 | B.1.568 | 0.008889 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 8 | 8 | C.25 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 8 | 8 | P.1.15 | 0.001859 |
ORF1ab/nsp3 | 428 | T428S | aCt | aGt | 6 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 428 | T428S | Act | Tct | 1 | 7 | All | 0 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 7 | 7 | B.1.1.301 | 0.008255 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 7 | 7 | B.1.524 | 0.009845 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 4 | 6 | 0.222222 | |
ORF1ab/nsp3 | 428 | T428T | acT | acA | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 6 | 6 | B | 0.000767 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 6 | 6 | B.1.1.294 | 0.007595 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 6 | 6 | B.1.628 | 0.002114 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 6 | 6 | C.21 | 0.857143 |
ORF1ab/nsp3 | 428 | T428R | ACt | CGt | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 428 | T428R | ACT | CGA | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 428 | T428R | aCT | aGA | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 5 | 5 | B.1.1.348 | 0.003981 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 5 | 5 | B.1.23 | 0.030303 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 4 | 5 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 428 | T428T | acT | acA | 1 | 5 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 428 | T428I | aCT | aTC | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 428 | T428I | aCT | aTA | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | A.2.5.2 | 0.006289 |
ORF1ab/nsp3 | 428 | T428del2 | ACt | --t | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 428 | T428P | Act | Cct | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 428 | T428P | AcT | CcA | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | AY.7.2 | 0.002237 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | B.1.1.526 | 0.014184 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | B.1.258.14 | 0.003922 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | B.1.513 | 0.055556 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | C.10 | 1 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 428 | T428N | aCT | aAC | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 428 | T428C | ACt | TGt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 428 | T428V | ACt | GTt | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 428 | T428V | ACT | GTC | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 3 | 3 | AY.23.1 | 0.001252 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 2 | 3 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 428 | T428T | acT | acG | 1 | 3 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 3 | 3 | AY.46.3 | 0.002801 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 428 | T428R | ACT | CGA | 1 | 3 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 428 | T428R | ACt | CGt | 1 | 3 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 428 | T428R | aCT | aGA | 1 | 3 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp3 | 428 | T428S | aCt | aGt | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 428 | T428S | Act | Tct | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | B.1.399 | 0.005803 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | B.1.422 | 0.002437 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 3 | 3 | B.1.469 | 0.01083 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 428 | T428K | aCT | aAA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 428 | T428A | AcT | GcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 428 | T428V | ACT | GTC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 428 | T428V | ACt | GTt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 428 | T428K | aCT | aAA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 428 | T428del1 | Act | -ct | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 428 | T428del1 | acT | ac- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.1.194 | 0.009901 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 2 | 2 | B.1.1.232 | 0.00363 |
ORF1ab/nsp3 | 428 | T428P | Act | Cct | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 428 | T428P | AcT | CcA | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.1.402 | 0.022222 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.1.52 | 0.02439 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp3 | 428 | T428C | ACt | TGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 428 | T428del2 | ACt | --t | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.1.83 | 0.00542 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.170 | 0.008621 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | B.1.78 | 0.017094 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 428 | T428Y | ACt | TAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 428 | T428L | ACT | CTA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 428 | T428del1 | acT | ac- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 428 | T428T | acT | acA | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 428 | T428S | aCt | aGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 428 | T428Y | ACt | TAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 428 | T428S | aCt | aGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp3 | 428 | T428T | acT | acA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 428 | T428S | aCt | aGt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 428 | T428del1 | Act | -ct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 428 | T428R | ACt | CGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 428 | T428S | aCt | aGt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 428 | T428P | Act | Cct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 428 | T428L | ACT | CTA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 428 | T428del2 | ACt | --t | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.205 | 0.02381 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 428 | T428A | Act | Gct | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 428 | T428R | ACt | CGt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 428 | T428del2 | ACt | --t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp3 | 428 | T428I | aCT | aTC | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 428 | T428V | ACt | GTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 428 | T428P | Act | Cct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 428 | T428N | aCt | aAt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 428 | T428T | acT | acC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 428 | T428I | aCt | aTt | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 428 | T428C | ACt | TGt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 428 | T428del | ACT | --- | 1 | 1 | U.3 | 0.003861 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|