CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 425 | L425L | L1243L | syn | ctG | ctA | 16289 | 9466 | 0.581128 | 3992-3994 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 9466 | 16289 | All | 0.00181 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 8429 | 8430 | AY.74 | 0.974789 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 85 | 3095 | B.1.1.7 | 0.000076 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 31 | 565 | AY.4 | 0.000048 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 308 | 308 | B.1.36.9 | 0.990354 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 2 | 288 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 2 | 271 | P.1 | 0.000032 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 56 | 199 | B.1.617.2 | 0.000211 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 9 | 159 | AY.43 | 0.00004 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 6 | 130 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 15 | 118 | AY.44 | 0.000091 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 68 | 110 | B.1.177 | 0.000895 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 9 | 106 | B.1 | 0.000082 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 2 | 65 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 22 | 59 | AY.102 | 0.000583 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 55 | 55 | AY.12 | 0.017383 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 20 | 53 | AY.103 | 0.000124 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 2 | 49 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 43 | 48 | AY.47 | 0.001338 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 39 | 39 | B.1.120 | 0.3 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 37 | 37 | AY.21 | 0.070209 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 5 | 34 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 14 | 31 | AY.25 | 0.000084 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 25 | 26 | AY.45 | 0.003042 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 6 | 18 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 18 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 17 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 7 | 17 | AY.33 | 0.000467 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 8 | 17 | AY.5 | 0.000165 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 4 | 17 | B.1.221 | 0.000284 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 4 | 16 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 3 | 16 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 7 | 15 | B.1.351 | 0.000208 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 13 | 14 | AY.24 | 0.005603 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 10 | 14 | B.1.234 | 0.001319 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 11 | 11 | C.16 | 0.011665 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 10 | 10 | AY.5.3 | 0.003374 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 8 | 10 | B.1.427 | 0.000404 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 5 | 9 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 2 | 8 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 8 | 8 | AZ.4 | 0.026846 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 2 | 8 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 7 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 3 | 6 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 5 | 6 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 6 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 6 | 6 | P.1.16 | 0.002245 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 5 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 4 | 5 | AY.59 | 0.002119 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 5 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 5 | 5 | B.1.211 | 0.125 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 2 | 4 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 4 | 4 | AY.62 | 0.001743 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 3 | 4 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 3 | A.1 | 0.000282 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 2 | 3 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 3 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 3 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 3 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 2 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 2 | 2 | B.1.9.5 | 0.011364 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 2 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp3 | 425 | L425L | ctG | ctA | 1 | 1 | C.36.3 | 0.000567 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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