CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 425 | L425L | L1243L | syn | Ctg | Ttg | 16289 | 1632 | 0.10019 | 3992-3994 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1632 | 16289 | All | 0.000312 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 120 | 3095 | B.1.1.7 | 0.000107 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 109 | 565 | AY.4 | 0.00017 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 283 | 288 | AY.20 | 0.010999 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 257 | 271 | P.1 | 0.004049 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 47 | 199 | B.1.617.2 | 0.000177 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 126 | 159 | AY.43 | 0.000558 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 36 | 130 | B.1.1 | 0.000653 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 125 | 125 | B.1.564 | 0.053237 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 37 | 118 | AY.44 | 0.000225 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 35 | 110 | B.1.177 | 0.000461 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 12 | 106 | B.1 | 0.00011 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 66 | 66 | B.1.1.291 | 0.048998 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 8 | 59 | AY.102 | 0.000212 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 12 | 53 | AY.103 | 0.000075 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 43 | 49 | AY.3 | 0.000428 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 4 | 48 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 34 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 7 | 32 | AY.100 | 0.000322 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 8 | 31 | AY.25 | 0.000048 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 20 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 20 | 20 | AZ.2 | 0.01642 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 20 | 20 | B.1.560 | 0.092593 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 4 | 18 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 8 | 18 | AY.98.1 | 0.000387 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 9 | 18 | B.1.429 | 0.000212 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 13 | 18 | P.2 | 0.002426 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 3 | 17 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 17 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 12 | 17 | B.1.221 | 0.000852 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 16 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 3 | 16 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 11 | 16 | B.1.526 | 0.000259 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 11 | 15 | B.1.1.519 | 0.000437 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 5 | 15 | B.1.351 | 0.000149 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 14 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 14 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 11 | 11 | B.1.1.50 | 0.007468 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 10 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 3 | 9 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 7 | 9 | B.1.1.222 | 0.001428 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 6 | 8 | AY.113 | 0.000854 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 3 | 8 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 4 | 7 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 7 | 7 | B.1.1.464 | 0.010309 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 7 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 6 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 6 | 6 | B.1.236 | 0.01232 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 5 | 6 | B.1.36.1 | 0.005701 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 6 | C.37 | 0.000116 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 5 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 3 | 5 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 5 | 5 | B.1.1.322 | 0.04386 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 4 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 4 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 4 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 4 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 3 | A.1 | 0.000564 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 3 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 3 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 3 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 3 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 3 | B | 0.000128 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 3 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 3 | 3 | B.1.1.121 | 0.007282 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 3 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 3 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 3 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 2 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 2 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 2 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 2 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 2 | B.1.1.3 | 0.017391 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 2 | B.1.160.7 | 0.004158 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 2 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 425 | L425L | Ctg | Ttg | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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